RNA id: XM_021572268.2


Basic Information

Item Value
RNA id XM_021572268.2
length 1167
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC110496393
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 47326949 ~ 47328359 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATAAGACTCGGTCTACTGGAGTTGTCAGACAGTCAGAGCTGCTGATCACGCTGCTGGACAATATTTCAAAGCGAGAATGTGGCTATTCTCACGTCTGTAGCATAGCTCTGTAAAGCCTCCGCACTGGGGACATCTTATCAtctattgattgattgatacttTATTGATCCTCAAAGGGGAATTCTCCATGATGTTTACTGTTGAAGAGATGAAGAGCACCTGTCACTGTTCAGGTTACCGGAAGCAACAACATCAGCCTCACACCATCCTGTACAACATCCTGAGCCGGGCAGACAGTAACTACAGCAACAACGACAGCCTGATCAACAACAACCAGGTGAACCAGTACAACTACAATAAGATGATGCCTCACAACTGTCACTGCAAGCGGCAACGGGCGGTGTGTCTGAAGAACCCTGAGGGAACCTGTCAGATGACATCTGATGTTCTGGTCAAAACCATCTGCTTCATGAAGAGTTTACCCTCCTTCAGTCAGCTTCCAGCGGAGGATCAGCTATCTCTGCTGAAGGACTGCTGGGTGCCCCTGTTCTCTCTGGGCCTGGCCCAGGAACGGACTGTGTTCGAGGTGAAGGATGTTCCACAGGCTAGCATGCTGAGGAGGATCCTCCTCAACGGTCAGGGGCCACAGAGTGAGGAAGAGCAGGAGGTGGAAGATGAGGGGAAGAGGTTGCTGCCCACCCTGGCTGGGGTGCATAAACTCAGGTCCTGTCTGAACAGACTGTGGACTCTGGATCTCAGCCCAAAGGAATATGCCTATCTGAAGGGAGCTATGCTGTTCAATCCAGACGTCCCAGGACTGAGCACCACTGTATTCATCAACAGTCTCCAACAGGAGGCCCAGAGAGCTCTACGGGAGGTTGTGCTGACCCTTCACCCAGGAGACTTGGGTCGATTCAGCTGCATCCTACTATCGACCTCTGACTTACAGACTGTCAGCCAATCACTCATCACAGAACTGTTCTTCAGACCTGTTATTGGTCAGGCGGATCTGTTTGATTTGTTACGCGAGATGCTGTTTATTAGACAAGAATAAagctgaaagtgtgtgtgtgtatgtgtttgaatTATATTTTAGGGTATTTTCTACCGTGACAACTATGAACGTGAAGAATGCAACCAGGCAATAAAAGTTCAATAAACTAAA

Function

GO:

id name namespace
GO:0009987 cellular process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1779661 lncRNA downstream 926 47321146 ~ 47326023 (-) True G1555467
TU1779656 lncRNA downstream 2738 47321146 ~ 47324211 (-) False G1555467
TU1779660 lncRNA downstream 2738 47321146 ~ 47324211 (-) False G1555467
TU1779647 lncRNA downstream 22651 47303843 ~ 47304298 (-) True G1555458
TU1779645 lncRNA downstream 25421 47301182 ~ 47301528 (-) True G1555456
TU1779667 lncRNA upstream 4229 47332588 ~ 47339837 (-) False G1555469
TU1779664 lncRNA upstream 4460 47332819 ~ 47333224 (-) False G1555469
TU1779674 lncRNA upstream 10212 47338571 ~ 47376258 (-) True G1555473
TU1779668 lncRNA upstream 11137 47339496 ~ 47410478 (-) True G1555469
TU1779746 lncRNA upstream 152986 47481345 ~ 47481802 (-) True G1555531
XM_036952961.1 mRNA downstream 34741 47258150 ~ 47292208 (-) True LOC118941176
XM_036952962.1 mRNA downstream 66514 47258150 ~ 47260435 (-) False LOC118941176
XM_036952963.1 mRNA downstream 66531 47258150 ~ 47260418 (-) False LOC118941176
XM_036952956.1 mRNA downstream 75982 47248660 ~ 47250967 (-) True LOC118941174
XM_036952957.1 mRNA downstream 76025 47248660 ~ 47250924 (-) False LOC118941174
XM_021572276.2 mRNA upstream 308162 47636521 ~ 47647411 (-) True LOC110496398
LOC110496399 mRNA upstream 478720 47807079 ~ 47808361 (-) True LOC110496399
XM_036951068.1 mRNA upstream 562221 47890580 ~ 47927015 (-) False LOC110496837
XM_021572278.2 mRNA upstream 654367 47982726 ~ 47986560 (-) False LOC110496401
XM_021572279.2 mRNA upstream 673527 48001886 ~ 48022110 (-) True LOC110496402
TU1779304 other downstream 414034 46911977 ~ 46912915 (-) True G1555168
TU1778112 other downstream 1218847 46101248 ~ 46108102 (-) True G1554091
TU1777652 other downstream 1523901 45788099 ~ 45803048 (-) True G1553693
TU1777651 other downstream 1534816 45788099 ~ 45792133 (-) False G1553693
TU1777490 other downstream 1659209 45667361 ~ 45667740 (-) True G1553544
TU1779770 other upstream 215201 47543560 ~ 47546571 (-) False G1555543
TU1780537 other upstream 576480 47904839 ~ 47945574 (-) True LOC110496837
TU1780583 other upstream 654524 47982883 ~ 47983609 (-) True LOC110496401
TU1780876 other upstream 1028254 48356613 ~ 48356847 (-) True G1556577
TU1783089 other upstream 2639537 49967896 ~ 49968608 (-) True G1558535

Expression Profile