RNA id: XM_021572276.2


Basic Information

Item Value
RNA id XM_021572276.2
length 2400
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC110496398
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 47636521 ~ 47647411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACAGCCAATCAGGACGTTTATGTTAATCCCATATTCTTAAAACCCGTCAATATGCCTCTAGCTGGATTACAGCTAGAAGTGTGTCACAGCGCAGGAGAATATTGGAGATGCCACACCGTTCAGTTTACGGGTCTATGATTTGCATGTGCAGAACTCTCTCGGATCTTCAGCCTAGATTGTTTAGAAACTTCTGTTCTAAGCGAATCTGAGAAGCGCAACAGGAGCGATTTTGTTTGATTTCTCGTCGATTTCAAGTTTCATTCCAACTTCAAAATAAACACTTATTTGGGGAATTGCTTTGGTACTGTCCATAATAGCCTACATCAACTAAACTACCAAAGAATTGACTACTTTTCCAAATCCCATCGTCATGTCCTCCGGGGATGAGTCGGAGCAGAGTCGGCGGTTCTGTGTGTTGTCTTGGGAGCAGGTGCAGAGGTTGGACTCTATTCTCGGAGAGAGCGTCCCTATTCACGGACGCGGAAACTTCCCGACGCTCTCTGTACAGCCTCGGCAGATAGTGCAGGTGGTTCGGGCACGTCTGCAGGAGCGTGGTGTGGTGGTCCGGGATGTGAAGCTGAACGGTTCAGCAGCCAGCTATGTGCTCCACCAGGACACCGGCCTGGGCTACAAGGACCTGGACCTTATCTTTGGCCTAAACCTGACTGATGACAAGACCTTTCGTGTGGTCAAAGATGTGGTCCTGGACAGCCTGGTGGACTTCCTACCTCCGGGGCTCAGCCGTGTCTCGCCTATGACCCTCAAAGAGGCCTACGTCCAGAAGCTGGTGAAGGTGTGCAACGACACAGACCGCTGGAGCCTGATCTCCCTCTCCAACAACACAGGGAAGAACGTGGAGCTGAAGTTTGTGGACTCTCTGCGGAGGCAGTTTGAGTTCAGCGTGGACTCGTTCCAGATCGGTCTGGACTCACTGCTGCTGTTCGACCGCTGCTCAGAGACGGCCATGTCCATGTCTGAGAGCTTCCACCCCACCGTGGTCGGAGAGAGCATGTACGGGGACTTCCAGGAGGCCCTGGGACACCTCCGCACCAGGACCATAGCCACGCACAGCCCTGAGGAGATCCGGGGCGGAGGACTGCTGAAGTACTGCCACCTGCTAGTGCGGGGGTTTAAACCGGACTCAGAGGCTCATATGAAGCTGCTGCAACGCTACATGTGCTCTCGTTTCTTCATCGACTTCCCGGACATTGGCGAGCAGCAGCGTAAGCTGGAAGCGTATCTCCAGAACCACTTCAACGGCATGGAGGACAAGCGCTATGACTGCCTGGTGACGCTGCGGCATGTGGTGGACGAGAGCACCGTGTGCCTGATGGGCCATGAGCGCCGCCAGACGCTGGCACTGATCTCGGCGCTGGCGCTACGGGCCATGGCAGAGCAGAACGCCATCCCGGCCCTGGCTAACATCACCTGTTACTACCAGCCGGCGCCTTACGTCAGGGACGTCAACTTCAGTAACTACTACATAGCGCGGGTCCAGTCGCCCATGAGTAACTCTTATAGTAACTCTTACCACAGAACATGGCTCCCTTGCAGCTGAGTGATGTGGATCTGTGTAAGAGGACTGTGTTGTATGTTGTGTTTTTTACGCTTCTAGTTTCTCTGTTTTagtctcaaatggtaccctattccctatatagtgcagtactttacaTGACCAGgaaactatatagggaatagggtgccatttgagacacacctCTGTCTCATGGTAACGTGAGCTGAGCAGTTTGATAGAGTGCTTTGCTCAGTCCACCTGTAGCAAAATGGCTTCTTGTGGGAGACTTGAGGACAACGTCCACTGAGGACCAAAAAAAAGGAAACATTTGTATTGAATTGTATCTTTTTGCCAAATCTTCAACTGCAACCATTCCCACTAAGTTATATCAATGAATACTGCTGTAAATCTGATTTGAGACGTTGTTATGATGTTTTGTTAGCTTTTTTTCTGAAGCGTTGGCTTCTTTGTTATAGGTATGGTGAAGACTGGTGGTCTATTTTGATGTGTGGAAAACGGTTGAAATGTGATGGAATAACTTTTCAGCATCCCAGTCGCGATGAGGGACTTTAAGTGTATTTGGATCCATAAAAGGAAATATAAGAAACCAGAAATCTGAATTCTGTTCTGACTGTGGTTTCAACTGATCTTTTCATTTGAAGATGTAAGGACCGAATAATAAAAATGTTGTGTAGCGTGAAGAAAACAAAACAGACTTTTGTGATTCTAAGTGCCTGAAATACCAACCGACATCTTAAAGTAGTTTACTTTGTAAATGAAATAACTGTTTTTGGATCTTTTTCACCCAGGTTACTGTACATTTCTCAATCCAGGGTCAGGGTACTTCATTTTCAAATAATAAAAAAAGATACAAAATGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1779916 lncRNA downstream 9473 47626820 ~ 47627048 (-) True G1555682
TU1779819 lncRNA downstream 72262 47563995 ~ 47564259 (-) True G1555585
TU1779815 lncRNA downstream 73671 47562594 ~ 47562850 (-) True G1555581
TU1779809 lncRNA downstream 75698 47560607 ~ 47560823 (-) True G1555575
TU1779801 lncRNA downstream 88412 47547894 ~ 47548109 (-) True G1555567
TU1779970 lncRNA upstream 22630 47670041 ~ 47670560 (-) True G1555731
TU1779997 lncRNA upstream 39561 47686972 ~ 47687283 (-) True G1555758
TU1780112 lncRNA upstream 45527 47692938 ~ 47722383 (-) True G1555868
TU1780129 lncRNA upstream 68970 47716381 ~ 47724569 (-) False G1555883
TU1780130 lncRNA upstream 68970 47716381 ~ 47724569 (-) True G1555883
XM_021572268.2 mRNA downstream 308162 47326949 ~ 47328359 (-) True LOC110496393
XM_036952961.1 mRNA downstream 344313 47258150 ~ 47292208 (-) True LOC118941176
XM_036952962.1 mRNA downstream 376086 47258150 ~ 47260435 (-) False LOC118941176
XM_036952963.1 mRNA downstream 376103 47258150 ~ 47260418 (-) False LOC118941176
XM_036952956.1 mRNA downstream 385554 47248660 ~ 47250967 (-) True LOC118941174
LOC110496399 mRNA upstream 159668 47807079 ~ 47808361 (-) True LOC110496399
XM_036951068.1 mRNA upstream 243169 47890580 ~ 47927015 (-) False LOC110496837
XM_021572278.2 mRNA upstream 335315 47982726 ~ 47986560 (-) False LOC110496401
XM_021572279.2 mRNA upstream 354475 48001886 ~ 48022110 (-) True LOC110496402
LOC110496403 mRNA upstream 390447 48037858 ~ 48049720 (-) True LOC110496403
TU1779770 other downstream 89950 47543560 ~ 47546571 (-) False G1555543
TU1779304 other downstream 723606 46911977 ~ 46912915 (-) True G1555168
TU1778112 other downstream 1528419 46101248 ~ 46108102 (-) True G1554091
TU1777652 other downstream 1833473 45788099 ~ 45803048 (-) True G1553693
TU1777651 other downstream 1844388 45788099 ~ 45792133 (-) False G1553693
TU1780537 other upstream 257428 47904839 ~ 47945574 (-) True LOC110496837
TU1780583 other upstream 335472 47982883 ~ 47983609 (-) True LOC110496401
TU1780876 other upstream 709202 48356613 ~ 48356847 (-) True G1556577
TU1783089 other upstream 2320485 49967896 ~ 49968608 (-) True G1558535
TU1783125 other upstream 2375680 50023091 ~ 50034141 (-) True LOC110496434

Expression Profile