RNA id: XM_021572278.2



Basic Information


Item Value
RNA id XM_021572278.2
length 2039
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110496401
representative False

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 47982726 ~ 47986560 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TACAGCACCAAGCAcctgttgcctctctctctctcgctctctctagctgcATCACTCGGGACTGTAAAGCTGTAGCTActattactgtgtgtgtactctactgtcctgtggaCTCTTGGATATTATTGCAGACTACGTCTTCAGAGATACTCTACCAGAGAATAACTATGGCTCTATCACTGAACTCTCTCACCATCATAACACTCTGTGTGCTCCTGCAGGAGGGTTTTGGGCTCCCTGTATCCAGCCAGCCTGAGCTCCCTGCCCAGTCCCCGTCCCAGAACAGCCCACACCACACCAGGGTTAAACGATGCTCCTGCAGTAACTGGCTGGACAACGAATGCATCTACTTCTGTCACCTGGACATCATTTGGGTCAACACTCCCAATAAGGTCATCCCCTACGGTCTTGGCAGCCCCCTGTCCCGACGTCGCCGCTCCACCGGGCGATGTGAATGTGCCCACCCAGCCGACAGGACCTGCTCCGGATTCTGCCACAACAGCTCAGAGAACCCCAGATTCGTAGTGGTAAGCCCCTCAGACCAGACCCTGGAACAGGCTGTTAGCAGTCCAGACACAACCAGCAGCGACCTACTGACCTCTCTCAGAAACACGGTCCGatccaacatggctgccatagagcAGGCTGCTCCCTCTAGGAAGAAGAATGTGTCCAGAGCCAACAGACTGAACATCgggtagatgaggaggagggaggaagaggagctgAAAGAGGAGCTTTAAGAGCTCCAGAGCATCCGAACAAAGACCCCCTGGAGGAAACTTAGGGAGTCCTCCCCGGGGAAGACATAGAAGAGAGGTCCTAAGAGAGACCCTGAGAAGAGGGCAAATATGGAACACTGGCTGCCCACTGTTGTATAACACCTAGTAGACTGGATATGGACATTATCTGGATATGAGTCTTGGACTAATCTGGCAAAGAGTCCGATTCGGAAGACTAGGGAGGACCAAGTGTGTCCTCTGTGAACTGTGACAGTCTGGACTAGGATGGTTGCTGACTGTGTGCTGGTCATGGGTTGTCATCATGTCCCAAACATAAATACACTTTCTGTGTCTGAGCACCTGAAATGGGTGGATGCAAGACAAGGCATTCTGGAGTGATGTTAGTCTATGTTTACTTTACAGGCTTACTTCATTAGTGCCTTGAAAATATTGACCACTATTCTCATTTGGATTTGGATCCTTCACCTGTCACACGACATCTACTATATCATAGAATAAAAGATAAAAAAGGATTGTTCCTCTGTATCAGAGATGTATTGCCAGTTTATAGTGATTGCCATGCATGCATTTAAACTACTTGAAATACTTTTGGCACATGAAGGACATTACTTTAAGGGACAGGGaattactacacacacacaccttccggTAGCAGCAGATAAAAGCAGGTCTATTGTGATGGCGGAAGTATTTATTGCGCAGCCACTGTTAAATGTTTTGATTGTAGACAGAGCCAAGGCAGCAGACTTCAATGGGTCTGCTCCTTGCCAAATATGCAGTGACTGTTTTTCTGCTTTCAACAAATATCCATTAATGTCCATGTTATTACACATTGGGAAATTAGGACACTGCACTTCTGTTCTAATGCCTTCAAGGGAATGTGTTTTTATGTCCAGTAGACTTTAGATGGGTTAGGCTGACCACAAGGCATTGACTGGAAACGCTACCGTCTTCCACTGATGTTCAAGTCCAATGTCACAATGCTGTGTATTTATgatatgattatttatttatttgtttgtgttttgttGAGGAATTTGTGTATCAAAATGCTGGCCTGCGCTTTTGTTTGGCGTACTGTTGCTATCCCTAGAAGGACAATTCACCCACAATAGTCTATTTAGTAGTCAAATACGCTCTGGGAGGTTGAaagaaatgtttacttacgaaTTGTTCTATTCCAAGCTATTCATATGATCTATTATCAgcaattatttatttaacttatttTTTGGCATATACTTATATATTTGTGTTGTGTGAGCTTATCACTTTTAatgtgtgatgaaataaata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1780563 lncRNA downstream 35492 47947033 ~ 47947234 (-) True G1556287
TU1780562 lncRNA downstream 35959 47946528 ~ 47946767 (-) True G1556286
TU1780559 lncRNA downstream 79010 47903449 ~ 47903716 (-) True G1556283
TU1780553 lncRNA downstream 98288 47884074 ~ 47884438 (-) True G1556277
TU1780552 lncRNA downstream 99553 47882878 ~ 47883173 (-) True G1556276
TU1780586 lncRNA upstream 3442 47990002 ~ 47990207 (-) True G1556310
TU1780587 lncRNA upstream 4393 47990953 ~ 47991203 (-) True G1556311
TU1780594 lncRNA upstream 16618 48003178 ~ 48003497 (-) True G1556318
TU1780595 lncRNA upstream 18109 48004669 ~ 48004899 (-) True G1556319
TU1780599 lncRNA upstream 21340 48007900 ~ 48008100 (-) True G1556323
XM_036951068.1 mRNA downstream 55711 47890580 ~ 47927015 (-) False LOC110496837
LOC110496399 mRNA downstream 174365 47807079 ~ 47808361 (-) True LOC110496399
XM_021572276.2 mRNA downstream 335315 47636521 ~ 47647411 (-) True LOC110496398
XM_021572268.2 mRNA downstream 654367 47326949 ~ 47328359 (-) True LOC110496393
XM_036952961.1 mRNA downstream 690518 47258150 ~ 47292208 (-) True LOC118941176
XM_021572279.2 mRNA upstream 15326 48001886 ~ 48022110 (-) True LOC110496402
LOC110496403 mRNA upstream 51298 48037858 ~ 48049720 (-) True LOC110496403
XM_036952968.1 mRNA upstream 70462 48057022 ~ 48062162 (-) True LOC118941177
XM_036952975.1 mRNA upstream 405355 48391915 ~ 48661346 (-) False LOC110496838
XM_036952977.1 mRNA upstream 405355 48391915 ~ 48661346 (-) False LOC110496838
TU1780537 other downstream 37152 47904839 ~ 47945574 (-) True LOC110496837
TU1779770 other downstream 436155 47543560 ~ 47546571 (-) False G1555543
TU1779304 other downstream 1069811 46911977 ~ 46912915 (-) True G1555168
TU1778112 other downstream 1874624 46101248 ~ 46108102 (-) True G1554091
TU1777652 other downstream 2179678 45788099 ~ 45803048 (-) True G1553693
TU1780876 other upstream 370053 48356613 ~ 48356847 (-) True G1556577
TU1783089 other upstream 1981336 49967896 ~ 49968608 (-) True G1558535
TU1783125 other upstream 2036531 50023091 ~ 50034141 (-) True LOC110496434
TU1783393 other upstream 2369709 50356269 ~ 50359030 (-) True LOC110496438
TU1783548 other upstream 2450437 50436997 ~ 50437459 (-) True G1558916

Expression Profile