RNA id: XM_036952976.1


Basic Information

Item Value
RNA id XM_036952976.1
length 6340
RNA type mRNA
GC content 0.53
exon number 31
gene id LOC110496838
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 48391915 ~ 48661347 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGCATGGGGGTTGACTCTTTTCAGCAAGGAATTCAGTCATCAATGAGCGGACAACTTTGGAACAGTCCTGCCGCAGTCACTCACTACAAGGATTTCGTCTGATAACGGGAGCTGGACTAAAACGTTAAAATGTATAGCGGAGTGATTCTACTGATGCTGGTCGTCGGGATCTACACTGATACTATGGACCAAGGGCCAACAGCTGGCTGTACCTTTGACGAGGACTCCGACCCTGGGTTGTGTGAGTACAAGCAGGGACAGGAGGACGACTTTGACTGGCAGCTGATGAGGACATACAACTGGCCACACACCTCCCCAGACCTGCTGCGAGgcTCGTTCATGATGGTGAACTCGTCCCAGCATGCTGCGGGGCAGCGggcccacctcctcctccattcgtTGAGTGAGAACGACACGCACTGCATCCAGTTCAGCTACTTCCTGTACAGCCGCGACGGCCACTCCCCCGGGGAGCTGCAGCTCTACATCCGGGTCAATGGGGGGCCGTGGGGCAGTGCCGTGTGGAACGTCTCCGGGTCACATGGGCGCCAGTGGCACCAGGTGGAGCTAGCTGTCAGCACATTCTGGCCCAGCGAATACCAGGTGGTGTTTGAAGCATCGGTCTCAGCAGAACGGCGAGGCTACATCGCCATTGACGACATCCTGCTGCTCAATTACCCCTGCTACAAGGTTCCCCACTTCTCTCGGCTGGGGGATGTGGAGGTCAATGCAGGGCAGAATGCCACCTTCCAGTGTGTCGCCACGGGCAAAACTACAGAGACAGAACCCTTCCTACTGGagcgtCGTAACGGTGCGGTTGTGGCGGCGTCCTCTATCCAGCGTCTGAGCCACAAGCGTCTCATGGCCACCTTCCAagtggaggctgagagaggggaGCAGGACCTGTATCGCTGCATCACAGAGTCCGCACGCGGAGCTGCCGTGTCCAACTTCGCCGAGCTCATTGTCAGAGTGccccccacccccatcgctccccCCCAGCTGCTCCGGGCTGGCCCCACCTACCTGATCATTCAACTCAACACCAACTCCATCGTGGGGGATGGCCCTGTTATCCGCCGTGAGATCGAGTACCGGGCCAGCCAATCACCATGGTCGGAGACACATGGTGTGGGCTCGCTCACGTAtaagGTGTGGCATCTGGAGCCGGACACAGAGTACCGTATCAGTGTTTTACTGACCCGACCAGGGGAGGGAGGCACAGGGGCGCCTGGACCTCCCCTGGTCAGCAGGACCAAGTGTGCAGAGCCTATGCGTGCGTTGCGAGGCCTCACAGCCATAGAGATCCAGCCTCGTCAACTAGTCTTACAGTGGGAACCTCTGGGCTACAACCTGACGCGCTGCCACACctactccgtctctctctgctaCCGTTACTCCACACCTGCAGGGGGCAGCGCAGGGAACAATGCCACAGTGAGGGAGTGTCTCTCTGTAGAGAGGAACCAATCACACTTCACCCTGAGGGACCTGCCCCCGTTCCGCTCCGTCCACGTCCGGCTGGCGCTGGAAAATCCAGAAGGCAAGAAAGAAGGCAGAGAGGTCACCTTTCAGACCGAGGAGGACATTCCTGGTGGCATCGTCCCAGAGTCACTAACTTTCACCCCATTAGACGATATGATCTTTCTGAAGTGGGAGGAGCCTGTGGAGCCCAATGGGGTCATCACACAGTATGAGATCAGTTACCAGGGCATCGAGTCATCCGACCCGGGTATCAACGTACCGGGCCCTCGCCGTACTGTCTCCAAGCTGAGGAACGAGACATACCACATGTTCTCTGGTCTACACCCCGGCACCACCTACCTGGTGTCTGTTAGAGCTCGCACTGCCAAGGGCTTCGGGCAGACCGCCCTCACTGAGATCACCACCAACATCTCCGCCCCGGTGTTTGACTATGAGGATGTCCCAGCCCCACTCAGTGAGTCAGAGAGTACCATCACTGTGCTGCTGAGACCTGCGCTGGGCAGAGGAGCACCAGTCAGTGCATACCAGGTGGTGGTAGTAGAAGAGGATGGTTCTAGGCGgatcaggaggaggaggaggaggagggagctgGGTAGCGGTTCAGACTGTTTTCCTGTGCCAGCGTCCCAGGTGGAGGCCCAGTCTAAGGGGACGCCTCACTACTACACAGCTGAGCTGCCCCCCTCCAGTCTCCCTGAGGCCACTCCGTTCACCGTAGGGGACAACCACACCTATAATGGCTACTGGAACACTCCCCTGGACCCCTCCAAGAACTACCTAGTCTTCTTCCAGGCTATAAGCAACTTCAGAGGGGAGACGAGAATTAACTGCATCCGGATTGCCCGTAAAGCTGCCTGTAAGGACCATAAGAGGGCCCTGGAGGTGTCCCAACATGCAGAGGACATGGGTCTGATCCTGGGGGCCTGTGCTGGCGGACTGGTGGTCCTCATTCTGCTGCTGGGGgccatcgtcatcatcatcaagAAGGGAAGGGACTTCTATTCTTACTCTTACTACCCCAGGAAGAAGGTAGCGCTGAACAAGGCAGCCATGTCGTACCGTCAGGAGAAGACCAGGAAGCTAGGTTCTCTGGACTGCAGCATGACAGAGCAGAGCACCCTGCAGCAGGATGGGCGCACTGCTAATTCCTTCATGGACGCCCACACCTGCAACACACGGAACGAACAGAGGAGTTCAGTGAACGAGTCCAGCAGCCTGTTGGGTGGTTCCCCTCGACGCCACTGTCGTAGGAAGAGCTCTCCGTACCACACGGGTCAACTTCACCCCGCGGTCAGGGTGGCAGACCTCCTCCAACACATCAACCAGATGAAGACTGGGGAGGGATACGGCTTCAAACAGGAGTatgagAGCTTCTTTGATGGATGGGATGTCACCAAGAAGAAGGACAAGACTAAAGGGAGACATGACAGTTTGCTGGGGCATGATCGTCATCGAGTCAAGCTACACTCTCTCCTAGCAGACCCCAACTCTGACTATGGCAATGCCAACTACATAGACGGGTACCAGCGATCAAACCACTTCATAGCCACCCAAGgtcCCAAGCAGGAGATGATCTATGACTTCTGGAGGATGGTGTGGCAGGAGAATTGCTTCAGTATTGTCATGATCACTAAACTGGTGGAGGTGGGCAGGaTGAAGTGCTGTAAGTATTGGCCCGAGGACAGTGAACTCTATGGAGACATCAAGATCACACTGCTGAAGACGGAAACACTGGCCGAGTACACCGTCCGCACCTTTGCTATGGAGCGGAGGGGCTACCCAGCGAAACATGAGGTATGTCAGTTCCACTTCACCTCCTGGCCAGAGCATGGTGTTCCCTACCACGCCACAGGCCTGTTGGCCTTCCTACGCCGGGTCAAGGCCTCCACACCCCCCGATGCTGGGCCCGTGGTTGTCCACTGCAGTATGGGAGCAGGCAGAACAGGCTGCTACATCGTACTGGACGTCATGCTGGATATGGCAGAGTGTGAGGGAGTGGTGGACATCTACAACTGTGTCAAGACCCTCTGCTCCAGACGCATCAACATGATACAGACAGAGgagcaGTATGTGTTCATCCACGATGCCATTCTGGAGGCCTGTTTGTGTGGAGAGACAGCTATACCTGTTCTTGAGTTTGCTCTGACCTATAAGGAGATGCTGAGGGTTGACTCACAGAGCAACACCTCCCAGCTACGAGAGGAGTTCCAGaCGTTGAACTCTGTGACCCCTCACCTGGACGTGGAGGAGTGCAGCGTATCCCTGTTGCCGAGGAACCGCGAGAAGAACCGTAGCATGGACGTCCTGCCCCCCGACCGCGCCCTGGCCTTCCTGGTCACCACTGAGGGCATTGCCGAGGGCAACAACTACATCAACGCCGCTCTCACTGACAGCTTCCACCGGCCCGCCGCCTTCGTGGTCACACCTCACCCGTTACCGGGAACCACGGCAGACTTCTGGAGGCTGGTCTATGACTATGGATGTACCTCGGTGGTGATGCTCAACCAGATCAACCAGTCCAACTCTGCCTGGGTGAGaagaggggagCCGTGTCTAAAGTACTGGCCAGAGCCTGGGCTGCAGCAGTTTGGACCAATGACAGTTGAGCTCCTGTCCATGACGGctgatgatgatgtcatcatTCGTCTGTTCCGGGTTCAGAACATCATGCGGcTCCAGGAAGGTCAGCTGGTGGTTCGTCATTTCCAGTTCCTGCGCTGGTCTCCATACCGTGACGTCCCAGACTCTAAGAAGGCTTTCCTCAGCCTCCTGGCCCAGGTCCACAACTGgcagagggagtgtggagagggACGTACCATCGTCCACTGTCTTAACGGCGGTGGTAGGAGTGGTACGTTCTGTGCTTGTACCATGCTGCTAGAGATGATCCGTCATCACAGCCTGGTGGATGTCTTCTACGCTGCCAAGACGCTACGCAACTCCAAACCCAACATGGTGGAGACCATGGAGCAGTATCGGTTCTGCTATGACCTGGCCTTGGAGTACCTGGACGCCTTGGACTGCCTGAGTGAGATAGAAGTGAGATAacactgatcccagatcagcttAGGCTCAGGGGAGATGGAGTGGAGTCCTGGGCCTAGACTGGATCTCAGCCTGGGTCCACATTACCTGGGCTTCCCAGCCTGGTCGTAGCCTGAGTCCACAGCCTGGGCCTGGACCTGGGCCTGAGTCCACActgctctgcttctctctctacaCTTCTACATCTAGCACAGATTTGTCAGACCTTCTCAACCCTAGAAGGAGTGTAGGGATAGAGGCCTGGGACTCAGTCCGCTGCCTGAGTCCGGCCTGGTCCACACCACTCCGTCCTGGGTTTTCCCTTGGGTCTACAGCCTGGGTCTAGCCAAGTTCCTGCTCTGCTTCCCTCTCGTCTCTTCCCCCCCAGGTCTGGGTGTATCAGTGTATCTGCTGCCATAACGGACATGGACAAAAAACtatgagagcgaaagagagggagaccgagagagatgaTGGGACATGCTTCTACCTTCTACTTTCTACCTGTCGATTATGTACTCTTTTCCTTTCCCCTGCATTCTTATCCCATCTGTAAGTTGCTCTTCTGTTCGGTGCCACATACTATCTGCCAAATACAAGGAAGAGGACAAGGAAATGGGCAGGATCGTCCTCTTCTCATTGGACGTATTTCTGGTCACCTGACCACTGGTGGTATACGCAAAGGTCTCCGCAACTTCCTGCCTTATTTTATTATGTCAatgacaacaataacaacaacatcgAAAAACATAAAAGCTGAAGTATaacaacaagacaatgatgcCACAACTGCAGCAGATAAAATATGTCAACTATTAGGTgattttgtgtgtttgttttgtaatACGTATAATGATCTTGTAAATGATGCAATGATCTACTGTTGGTGAACATCCAATGTTGTTACTGTACACTGGTGTTTTCTCTGGTGAGGCTGGAATGGCTATTTCTCCATCGGCAGAGAAGAAGTTTACATAGAAAATGGCACTGAAATGATGTTGGGTGCATTGATTCTATGGTCCTAATGTACAGAAAGGACCTATCTGGTTTATTATTTATTGTATGTGTAAATAGATTGTTTTCCAGATGTTTCTAGATGTTTGTTGTCTTAACTCTGTGCCAATTCATTCTATTTTGTCTATGAACAACATGGTCTCATTAGAATAATGTCAAAATAGTGACGTTTAACCATTGTAATGGTATGCCACCCAATTACTTTTATGTCACTTCTGGTGACATATTACTCCATATTTGTAATGAGATATGTCTGCTATAAATTACATTCTAGGTTTATGTCACCCAATTTGACATAGTACTTATGTAATTTCTGGTGAGATATTACTCCATATTTGTAATGAGATACGTCTGCTATAAATGAGAACCACTTGAGCACCTGCATGCCAGTCAGTTGTTAGTGTTTCCATTGCAGTTTGTGACCCAGTCTGCTTCAGGGGACCGTCCCCACTGCTACCAGAGACTGGGGTTGCAAAATTACTGTAGCTTTCCAAAATCCCCAGATTTGTCCTGAAATGAAATAAGCAAGAAGGGAATCTTCCAACTGCGAAACTTATGACTTGGAATCTTACTACTGGGATTGCAGGAAACCTGGGACGTTCGGGGAAGTTACCTAATTTTGCAACCCTATGCGAGAACCCCAGAGAGAGTAATgtaacaaaaaaaatgacatgaTTTGTCTCTAGCTGTGGGAACAAATGTGGTCAGTTTGCCGAAATTAGTTGCTTTTTGCATTTGTATTTATTCattcaatgttttattttataattgtgtataaatgaaaataaataaaatattatgaTGTTGGTAATATCA

Function

GO: NA

KEGG:

id description
K16662 PTPRU; receptor-type tyrosine-protein phosphatase U

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1780910 lncRNA downstream 12412 48379279 ~ 48379503 (-) True G1556611
TU1780898 lncRNA downstream 19905 48371657 ~ 48372010 (-) True G1556599
TU1780886 lncRNA downstream 27837 48363876 ~ 48364078 (-) True G1556587
TU1780875 lncRNA downstream 35824 48355687 ~ 48356091 (-) True G1556576
TU1780863 lncRNA downstream 44710 48346909 ~ 48347205 (-) True G1556564
TU1781492 lncRNA upstream 26149 48687496 ~ 48687903 (-) True G1557165
TU1781493 lncRNA upstream 26908 48688255 ~ 48689122 (-) True G1557166
TU1781502 lncRNA upstream 35148 48696495 ~ 48696715 (-) True G1557175
TU1781505 lncRNA upstream 37013 48698360 ~ 48698613 (-) True G1557178
TU1781511 lncRNA upstream 44443 48705790 ~ 48706011 (-) True G1557184
XM_036952968.1 mRNA downstream 329753 48057022 ~ 48062162 (-) True LOC118941177
LOC110496403 mRNA downstream 342195 48037858 ~ 48049720 (-) True LOC110496403
XM_021572279.2 mRNA downstream 369805 48001886 ~ 48022110 (-) True LOC110496402
XM_021572278.2 mRNA downstream 405355 47982726 ~ 47986560 (-) False LOC110496401
XM_036951068.1 mRNA downstream 464900 47890580 ~ 47927015 (-) False LOC110496837
LOC110496839 mRNA upstream 67878 48729225 ~ 48730477 (-) True LOC110496839
XR_005037494.1 mRNA upstream 93183 48754530 ~ 48755869 (-) True LOC118941178
XM_021572288.2 mRNA upstream 157590 48818937 ~ 48828082 (-) False LOC110496407
XM_036952981.1 mRNA upstream 157590 48818937 ~ 48828082 (-) False LOC110496407
XM_036952979.1 mRNA upstream 157591 48818938 ~ 48827334 (-) False LOC110496407
TU1780876 other downstream 35068 48356613 ~ 48356847 (-) True G1556577
TU1780583 other downstream 408306 47982883 ~ 47983609 (-) True LOC110496401
TU1780537 other downstream 446341 47904839 ~ 47945574 (-) True LOC110496837
TU1779770 other downstream 845344 47543560 ~ 47546571 (-) False G1555543
TU1779304 other downstream 1479000 46911977 ~ 46912915 (-) True G1555168
TU1783089 other upstream 1306549 49967896 ~ 49968608 (-) True G1558535
TU1783125 other upstream 1361744 50023091 ~ 50034141 (-) True LOC110496434
TU1783393 other upstream 1694922 50356269 ~ 50359030 (-) True LOC110496438
TU1783548 other upstream 1775650 50436997 ~ 50437459 (-) True G1558916
TU1783852 other upstream 1961744 50623091 ~ 50623983 (-) True G1559205

Expression Profile