RNA id: LOC110496839



Basic Information


Item Value
RNA id LOC110496839
length 647
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC110496839
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 48729225 ~ 48730477 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGtcaagaccagagagggtACCTTTTGCGACATGACCACAGCGCGCGGCAGCTGGACTCTGGTGGCAAGCGTGCACGATTACAACTTCTATGGGAAGTGCACGGTTGGCGACAGTTAGACCTGCCAGAAGGGCAACAACGCCAAATGGCCAAAAGGGGAAGACATGCTGGCCAACAGGAAGACTTGGGAGGCAGGCTACTACGACATCGTAGCAGAAGACATTTCGGTGTGGAACTTTCCCAGCAACATGCCCTTATACCACTGGAACCCGACTGCCATCATCCAACAATGGACCCTCCATTCCAATAGTATATGACCACAGGGATAAAGAGTCCACCAAAATGTTCTACGGCCCTAACACTAGAGGGGAGACTGAGGGAGGCGTCATCAGTTTCAGAGCCATAAACCATGAACGGGTGGCAACAGCCCTCTGCTCTGGGGTCAAACCCAAAGGCGGTAATGTTGAACACCACTGTATTGGTGGTGGTGGGTTTTTCCCTCAGGATAATCTTCTTCAATGTGGGGATTTCACCTCCTTTGCCTGGAACGACTATGGGACCAATGTAGGCTGGAGTACATCAAAACAGATGCTGGAGTCAGCTGTGTTACTCTTTTACCGCTAATTCACAGtgcatttatttttct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1781515 lncRNA downstream 13458 48715563 ~ 48715767 (-) True G1557188
TU1781511 lncRNA downstream 23214 48705790 ~ 48706011 (-) True G1557184
TU1781505 lncRNA downstream 30612 48698360 ~ 48698613 (-) True G1557178
TU1781502 lncRNA downstream 32510 48696495 ~ 48696715 (-) True G1557175
TU1781493 lncRNA downstream 40103 48688255 ~ 48689122 (-) True G1557166
TU1781529 lncRNA upstream 4080 48734557 ~ 48734788 (-) True G1557202
TU1781700 lncRNA upstream 299292 49029769 ~ 49030016 (-) True G1557360
TU1781716 lncRNA upstream 309703 49040180 ~ 49040452 (-) True G1557376
TU1782324 lncRNA upstream 354195 49084672 ~ 49086021 (-) True G1557879
TU1782352 lncRNA upstream 404197 49134674 ~ 49137971 (-) True LOC110496415
XM_036952971.1 mRNA downstream 67878 48391915 ~ 48661347 (-) False LOC110496838
XM_036952972.1 mRNA downstream 67878 48391915 ~ 48661347 (-) False LOC110496838
XM_036952973.1 mRNA downstream 67878 48391915 ~ 48661347 (-) False LOC110496838
XM_036952974.1 mRNA downstream 67878 48391915 ~ 48661347 (-) False LOC110496838
XM_036952976.1 mRNA downstream 67878 48391915 ~ 48661347 (-) True LOC110496838
XR_005037494.1 mRNA upstream 24053 48754530 ~ 48755869 (-) True LOC118941178
XM_021572288.2 mRNA upstream 88460 48818937 ~ 48828082 (-) False LOC110496407
XM_036952981.1 mRNA upstream 88460 48818937 ~ 48828082 (-) False LOC110496407
XM_036952979.1 mRNA upstream 88461 48818938 ~ 48827334 (-) False LOC110496407
XM_036952980.1 mRNA upstream 88461 48818938 ~ 48827628 (-) False LOC110496407
TU1780876 other downstream 372378 48356613 ~ 48356847 (-) True G1556577
TU1780583 other downstream 745616 47982883 ~ 47983609 (-) True LOC110496401
TU1780537 other downstream 783651 47904839 ~ 47945574 (-) True LOC110496837
TU1779770 other downstream 1182654 47543560 ~ 47546571 (-) False G1555543
TU1779304 other downstream 1816310 46911977 ~ 46912915 (-) True G1555168
TU1783089 other upstream 1237419 49967896 ~ 49968608 (-) True G1558535
TU1783125 other upstream 1292614 50023091 ~ 50034141 (-) True LOC110496434
TU1783393 other upstream 1625792 50356269 ~ 50359030 (-) True LOC110496438
TU1783548 other upstream 1706520 50436997 ~ 50437459 (-) True G1558916
TU1783852 other upstream 1892614 50623091 ~ 50623983 (-) True G1559205

Expression Profile