RNA id: XM_021572308.2


Basic Information

Item Value
RNA id XM_021572308.2
length 1971
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC110496421
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 49203985 ~ 49209483 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCAAGCAAAGTATTATggagttgtactccagtctagtagatggcggtaatgcaacatttattggatgccaaccgctgtTAAATCTCATCGAAGAAGAATTGGGATAGAAATTAAAGCTTGACCTGGCAACCCTGCTGTGGAACTAGTTCCTCTCAGTCCCAACATGCGCCATTGAATATAAACGTAACTGAAGTTTCACGGCATTCATTGTTCAAGTCCTTCTTATTTCTGTAATTTGTTGGTCAGAAAATAACAATGGAGACGATTTTAGAACAACAACGTCGCTACCATGAGGAGAAGGAAAGGCTGTTGGATGCCAAAACTAAGGAAATGATGCATAAGAAAACCACGTTACGCGAACAAATAAACTCAGACCATCGAACAAGAGCAATGTTGGATAGATACATGGACGTGAGTTCAACTGTCAGGGAAGCATATGAAGACAAAGATGGTATGAGGAAGGATGAACTGAACGCCATCTCAGGACCAAATGAGTTTGCAgagttctacaacagactaaaaCAGATCAAGGAGTTCCACAGGAAGCATCCTAATGAGATCTGTGTGCCCATGTCTGTGGAGTTTGATGAGCTGGTCAAGGCTAGAGAGAACCCAACTGAAGAAACACAGAACATGGTGGAGTTCAGTGATGAGGAGGCGTACGGACGCTACCTGGATCTTCATGACTGCTATCGGAAGTTCATCAACCTGAAAGGGGCAGAGAAACTGGAGTACATCAGCTACCTTTCCTCATTTGACCAGCTGTTTGATGTCTCCAAGGACAGAAAGAATGCTGAATACAAAAAGTACTTAGAGATGCTACTGGAGTACCTTCAGGACTACACAGAGAGAGTCAAACCTCTGCTGGACCAGAATGATCTCTACGGCAAGATCCTGGGAGAGTTTGAGAAGAAGTGGGAGATGGGGACCTTCCCTGGCTGGCCAAAAGAGACGAGCAGTGCTCTGACACACGCCGGAGCTCATCTAGACCTTTCTGCTTTCTCCTCTTGGGAGGAGTTGGCTTCCTTGGGTCTGGACAGGTTGAAGTCTGCCCTTATGGCCCTGGGCCTGAAATGTGGAGGAACCCTGGAAGAGAGAGCTCAGAGGCTGTTTAGCACCAAAGGAAAATCCCTGGAATCTCTGGATCCCTCCTTGTTCGCCAAGAACCCTAAGTCCAAGGGACCCAAGAAAGACACAGAGCGTAACAAAGAAGTCGCCTTCCTGGAGTCTCAGGTTTATGAGTATGTGGAAATCCTGGGGGAGCAGAGGCAGCTGACCCATGAGAACGTGCAGAGGAAGCAGgccaggacaggagaggagagagaggaggaagaggaggagcagctcagtgagagtgagagtgaagaTGAGGACAACGAGATAATCTACAACCCCAAGAACCTGCCTCTCGGCTGGGATGGAAAGCCCATTCCATACTGGCTGTACAAACTCCATGGCCTGAACATCAATTATAACTGTGAGATCTGTGGAAACTACACGTACAGAGGACCCAAGGCCTTCCAGAGGCACTTTGCAgagTGGCGTCACGCCCATGGCATGCGCTGCCTGGGAATCCCCAACACGGCTCACTTTGCCAACGTTACCCAGATCGAGGACGCTGTCTCTCTATGGTCAAAGCTGAAGTCACAGAAGGCATCAGAGCGCTGGCAACCAGATACAGAGGAGGAGTACGAGGACTCCAGTGGAAACGTGGTCAACAAGAAGACCTACGAGGACCTGAAGAGACAGGGTCTGCTGTAGAGAGGAGACCGACAAAGACTTGGAAACCTTGAAGCGCAACGTGATgcccaattattatttttttatttggcgtTTGACCCTTGACCTTTTCATTTACACTTTTCATTTAGAAGTTGTGATGTTGTTTTTATTAATTCCTTCCTTTGAcaaccatttagaaatgaaacaGCCATTGATTCTAATAATAAATGAGTAATATTTGTCACCA

Function

GO:

id name namespace
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12827 SF3A3, SAP61, PRP9; splicing factor 3A subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1782352 lncRNA downstream 66014 49134674 ~ 49137971 (-) True LOC110496415
TU1782324 lncRNA downstream 117964 49084672 ~ 49086021 (-) True G1557879
TU1781716 lncRNA downstream 163533 49040180 ~ 49040452 (-) True G1557376
TU1781700 lncRNA downstream 173969 49029769 ~ 49030016 (-) True G1557360
TU1781529 lncRNA downstream 469197 48734557 ~ 48734788 (-) True G1557202
TU1782445 lncRNA upstream 53174 49262657 ~ 49319177 (-) False G1557993
TU1782444 lncRNA upstream 106794 49316277 ~ 49319177 (-) False G1557993
TU1782446 lncRNA upstream 106794 49316277 ~ 49319177 (-) False G1557993
TU1782447 lncRNA upstream 106794 49316277 ~ 49319177 (-) False G1557993
TU1782448 lncRNA upstream 106794 49316277 ~ 49319527 (-) False G1557993
XM_021572309.2 mRNA downstream 97 49201226 ~ 49203888 (-) False LOC110496422
XM_036952991.1 mRNA downstream 97 49201226 ~ 49203888 (-) True LOC110496422
XM_021572305.2 mRNA downstream 3411 49186672 ~ 49200574 (-) False LOC110496418
XM_021572306.2 mRNA downstream 3411 49186672 ~ 49200574 (-) True LOC110496418
XM_036952988.1 mRNA downstream 3412 49186672 ~ 49200573 (-) False LOC110496418
XM_021572313.2 mRNA upstream 86089 49295572 ~ 49297343 (-) False LOC110496424
XM_036952995.1 mRNA upstream 86089 49295572 ~ 49297343 (-) True LOC110496424
XM_036952998.1 mRNA upstream 123198 49332681 ~ 49349929 (-) False LOC100135978
XM_036952999.1 mRNA upstream 123198 49332681 ~ 49349929 (-) False LOC100135978
XM_036953000.1 mRNA upstream 123198 49332681 ~ 49349929 (-) False LOC100135978
TU1780876 other downstream 847138 48356613 ~ 48356847 (-) True G1556577
TU1780583 other downstream 1220376 47982883 ~ 47983609 (-) True LOC110496401
TU1780537 other downstream 1258411 47904839 ~ 47945574 (-) True LOC110496837
TU1779770 other downstream 1657414 47543560 ~ 47546571 (-) False G1555543
TU1779304 other downstream 2291070 46911977 ~ 46912915 (-) True G1555168
TU1783089 other upstream 758413 49967896 ~ 49968608 (-) True G1558535
TU1783125 other upstream 813608 50023091 ~ 50034141 (-) True LOC110496434
TU1783393 other upstream 1146786 50356269 ~ 50359030 (-) True LOC110496438
TU1783548 other upstream 1227514 50436997 ~ 50437459 (-) True G1558916
TU1783852 other upstream 1413608 50623091 ~ 50623983 (-) True G1559205

Expression Profile