RNA id: XM_036952999.1


Basic Information

Item Value
RNA id XM_036952999.1
length 2400
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC100135978
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 49332681 ~ 49473129 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTACCTGCTCCGTACACCAGTTTGTTATCATATCCGTATCAATCGTTTAATTATTTATCTGGAATAATTTAACATAACGCTGAATTAATTAGGCTTAGCTCTGAGTTGATACGTAACATTGTCTCCAggcttcttttcttttctttttttggcCTTCATCAGCCTTTTGTATGAGCCTACCTGCCTTCGGTGCAGTCGTTGGCCATCATGAACTACTGCATGCCTGACATGTATGAGATGCCTCATGGCGTAGGCGGTGGCTACCCGATGCAGGGCGGTGGGGAGTACTGCATGTATGGAGGTGATGGTCCCGGGGGTTACGGGCACTGTGAGCCCCAGCCCATGCACCAGATCCACCCTCCCTGCATGGAGCAGGCTTGGCCCCCCAGCCAGCCCTACGCCTGCTCCTACCCAGGACCCAACCCCGTGTTCAAAAGTGAATACTGCACCATGGAAGTGCCTCTCAGCCACTACAACCACCAGCCCGACTACTATTCTGAGGGGAAGCCTGACTTCTCCCACATGCAGTGGATGCAAGAGGTCAACAAGAAAGGGTACATCCCCAGTTACCTGGACAAGGACGAGTTATGTGTAGTATGTGGGGATAAAGCTACAGGATATCACTATCGCTGTATCACCTGTGAAGGATGCAAGGGTTTCTTCCGGCGGACGATCCAGAAGAACCTGAACCCGACGTACGCGTGTAAGTACGAGGCAAAGTGCGTCATCGATAAGGTGACCAGGAACCAGTGCCAGGAATGTCGCTTCAAGAAGTGCATCGCTGTCGGCATGGCAACAGACTTGGTGCTGGACGACAGCAAGCGGCTCGCCAAGCGGAAGTTGATCGAGGAGAACCGTGAGCGGCGGCGGAAGGATGAGCTCCAGAAGACGGTGTGGGACCGGCCTGAGCCGTCCCAGGAGGAGTGGGACCTGATCCGCATGGTCACCGAGGCCCACATGTCAACTAACGCCCAGGGCAACCACTGGAAACAGAAACGCAAGTTCTTGAGTGCAGTGGGGGTGAAGGAAACCAAGCCTGTGGACATTGGTCAAGCACCGGTCATAAATGCATCTGAAGGGAGCAAAGTGGACATTGAAGCCTTCAGTCAGTTTACAAAAATTATCACCCCCGCCATTACCCGAGTGGTGGACTTTGCCAAAAAGCTGCCTATGTTCTGTGAGctgcctTGTGAAGACCAGATTATCCTATTGAAAGGCTGCTGCATGGAGATCATGTCTTTACGGGCGGCCGTTCGCTACGACCCCGAGAGCGAGACGCTGACACTTAACGGGGAGATGGCCGTGACCCGCGGCCAGCTGAAGAACGGAGGCCTGGGTGTGGTGTCAGATGCCATCTTTGATTTGGGCGTGTCGCTGTCGTCGTTCCACCTGGACGACTCTGAGGTCGCTCTGCTACAGGCCGTCATCCTCCTGTCCTCCGaccGTCCGGGGCTGACCAGCGTGGAGCGTATTGAGCGCTGTCAGGAGGAGTTCCTTCTGGCCTTTGAACATTACATCAACTACCGCAAACACAAGGTGGCGCAATTCTGGCCCAAGCTGCTGATGAAGGTGACGGACCTGCGGATGATCGGGGCGTGCCACGCCTCCCGCTTCCTGCATATGAAGGTGGAGTGCCCCAATGAACTCTTCCCCCCACTCTTCCTGGAGGTTTTTGAGGATTGACGGACAGACGGGCCCACACACCCTGCCGaggtgtgtgtcagagtgtgtgtgtgcgtgggcgcCTGGCCGGGGCTACGACAGTGGGCCTCAGAGTGGCTCTAGGCGTCTTGGGACACGTTGTTGGAACTCTCATTAGCACTACTGAGTCACTTCATTCCATACCTTAGGTGTAGCCTAGCTTCTCAGCCTAGTTCTTATGGATGGAACCATCCCTTATGATGCGGGTACATGTGAATAGCATTTTCTTTtggtttttattttgtaaatgtttcaCTTCTCAGTTACTTCTCTATAAGTTTTTGTTGTGTTAATTGTACAGTCTAATTTCTGTCGTCGACGGTGCTCGTTCAGTCAGTCATACAAACCATGCAACGTGTAGTGTTTAATTTGAGTCCATTTTAATACCGAATGCTGACTCCGCCAACACTGAGAAGGTCAGTGACAGACAGCAGAAGCCAGCTAACCAGCATTATTCCCTTCCATTTCGCATTCTCTTCCTACGATACTTCCCCAGTCAAGGGATGTGGAGTAGCTTTCATACAGGTGTCCTTCTGGTGCTGGTGTTCTGTgagagctacagttgaagtcggaagtttacatacacttaggttggagtcattaaaacttgtttttcaaccactccacaaatttcttgttaacaaactatagttttggcaagtcggttaggacatctactttgtgcatgacacaagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1782448 lncRNA downstream 13154 49316277 ~ 49319527 (-) False G1557993
TU1782445 lncRNA downstream 13504 49262657 ~ 49319177 (-) False G1557993
TU1782543 lncRNA upstream 127423 49477352 ~ 49477569 (-) True G1558076
TU1782589 lncRNA upstream 194384 49544313 ~ 49544584 (-) True G1558118
TU1782606 lncRNA upstream 231045 49580974 ~ 49581482 (-) True G1558134
TU1782611 lncRNA upstream 236414 49586343 ~ 49586880 (-) True G1558139
TU1782624 lncRNA upstream 260757 49610686 ~ 49611260 (-) True G1558152
XM_021572313.2 mRNA downstream 35338 49295572 ~ 49297343 (-) False LOC110496424
XM_036952995.1 mRNA downstream 35338 49295572 ~ 49297343 (-) True LOC110496424
XM_021572308.2 mRNA downstream 123198 49203985 ~ 49209483 (-) True LOC110496421
XM_021572309.2 mRNA downstream 128793 49201226 ~ 49203888 (-) False LOC110496422
XM_036951069.1 mRNA upstream 30927 49380856 ~ 49397467 (-) True LOC118940996
XM_036953006.1 mRNA upstream 417211 49767140 ~ 49784144 (-) False LOC110496426
XM_036953002.1 mRNA upstream 417211 49767140 ~ 49796975 (-) False LOC110496426
XM_036953003.1 mRNA upstream 417211 49767140 ~ 49796975 (-) False LOC110496426
XM_036953004.1 mRNA upstream 417211 49767140 ~ 49796975 (-) False LOC110496426
TU1780876 other downstream 975834 48356613 ~ 48356847 (-) True G1556577
TU1780583 other downstream 1349072 47982883 ~ 47983609 (-) True LOC110496401
TU1780537 other downstream 1387107 47904839 ~ 47945574 (-) True LOC110496837
TU1779770 other downstream 1786110 47543560 ~ 47546571 (-) False G1555543
TU1779304 other downstream 2419766 46911977 ~ 46912915 (-) True G1555168
TU1783089 other upstream 617967 49967896 ~ 49968608 (-) True G1558535
TU1783125 other upstream 673162 50023091 ~ 50034141 (-) True LOC110496434
TU1783393 other upstream 1006340 50356269 ~ 50359030 (-) True LOC110496438
TU1783548 other upstream 1087068 50436997 ~ 50437459 (-) True G1558916
TU1783852 other upstream 1273162 50623091 ~ 50623983 (-) True G1559205

Expression Profile