RNA id: XM_036953001.1


Basic Information

Item Value
RNA id XM_036953001.1
length 2319
RNA type mRNA
GC content 0.53
exon number 11
gene id LOC100135978
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 49332681 ~ 49473129 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGATTAATCCGAGCACTGCAGTTGTCAGTAGCTACAGTACGTTTTCCCGGGTCCATGTTGAAGTTTGTTAACCCAGACTTTCTCTCATACTCGCTTCGTCAGGTCATTCCAGGGCACGCGTTGCATCGGTTTGACCCCGCTCGCAGGTAGAAGAAAACCGACTACACCCGCGCGAACTCAGTTGGAGAGGAATGCACCAGTGGAGTGTTGGAAAATAACATTTCTGTTTGCCGACCTGCGTATGAGGGCTCTGTCTGGTGGGGCTCGGCAGCTCCTCAACCCGGCCTGGAGACTCCtcggctccctccctccctacctccctctgGCTCCAATGGTGTAAGCTGACGCATCACCGTGGGGGATTCTGACACTGCACACAGCCCAGTATCAGAAGGCAGGGGAGGGTATGAGAATGGTGTCTAGGCCCTGAAGCCCAGCAGCATGTCAGAGCAAGGAGACAAATGCACCACCCCCCGCTGGAAACATGAGGCCATGCAAAATGGGTACATCCCCAGTTACCTGGACAAGGACGAGTTATGTGTAGTATGTGGGGATAAAGCTACAGGATATCACTATCGCTGTATCACCTGTGAAGGATGCAAGGGTTTCTTCCGGCGGACGATCCAGAAGAACCTGAACCCGACGTACGCGTGTAAGTACGAGGCAAAGTGCGTCATCGATAAGGTGACCAGGAACCAGTGCCAGGAATGTCGCTTCAAGAAGTGCATCGCTGTCGGCATGGCAACAGACTTGGTGCTGGACGACAGCAAGCGGCTCGCCAAGCGGAAGTTGATCGAGGAGAACCGTGAGCGGCGGCGGAAGGATGAGCTCCAGAAGACGGTGTGGGACCGGCCTGAGCCGTCCCAGGAGGAGTGGGACCTGATCCGCATGGTCACCGAGGCCCACATGTCAACTAACGCCCAGGGCAACCACTGGAAACAGAAACGCAAGTTCTTGCCTGTGGACATTGGTCAAGCACCGGTCATAAATGCATCTGAAGGGAGCAAAGTGGACATTGAAGCCTTCAGTCAGTTTACAAAAATTATCACCCCCGCCATTACCCGAGTGGTGGACTTTGCCAAAAAGCTGCCTATGTTCTGTGAGctgcctTGTGAAGACCAGATTATCCTATTGAAAGGCTGCTGCATGGAGATCATGTCTTTACGGGCGGCCGTTCGCTACGACCCCGAGAGCGAGACGCTGACACTTAACGGGGAGATGGCCGTGACCCGCGGCCAGCTGAAGAACGGAGGCCTGGGTGTGGTGTCAGATGCCATCTTTGATTTGGGCGTGTCGCTGTCGTCGTTCCACCTGGACGACTCTGAGGTCGCTCTGCTACAGGCCGTCATCCTCCTGTCCTCCGaccGTCCGGGGCTGACCAGCGTGGAGCGTATTGAGCGCTGTCAGGAGGAGTTCCTTCTGGCCTTTGAACATTACATCAACTACCGCAAACACAAGGTGGCGCAATTCTGGCCCAAGCTGCTGATGAAGGTGACGGACCTGCGGATGATCGGGGCGTGCCACGCCTCCCGCTTCCTGCATATGAAGGTGGAGTGCCCCAATGAACTCTTCCCCCCACTCTTCCTGGAGGTTTTTGAGGATTGACGGACAGACGGGCCCACACACCCTGCCGaggtgtgtgtcagagtgtgtgtgtgcgtgggcgcCTGGCCGGGGCTACGACAGTGGGCCTCAGAGTGGCTCTAGGCGTCTTGGGACACGTTGTTGGAACTCTCATTAGCACTACTGAGTCACTTCATTCCATACCTTAGGTGTAGCCTAGCTTCTCAGCCTAGTTCTTATGGATGGAACCATCCCTTATGATGCGGGTACATGTGAATAGCATTTTCTTTtggtttttattttgtaaatgtttcaCTTCTCAGTTACTTCTCTATAAGTTTTTGTTGTGTTAATTGTACAGTCTAATTTCTGTCGTCGACGGTGCTCGTTCAGTCAGTCATACAAACCATGCAACGTGTAGTGTTTAATTTGAGTCCATTTTAATACCGAATGCTGACTCCGCCAACACTGAGAAGGTCAGTGACAGACAGCAGAAGCCAGCTAACCAGCATTATTCCCTTCCATTTCGCATTCTCTTCCTACGATACTTCCCCAGTCAAGGGATGTGGAGTAGCTTTCATACAGGTGTCCTTCTGGTGCTGGTGTTCTGTgagagctacagttgaagtcggaagtttacatacacttaggttggagtcattaaaacttgtttttcaaccactccacaaatttcttgttaacaaactatagttttggcaagtcggttaggacatctactttgtgcatgacacaag

Function

GO: NA

KEGG:

id description
K08362 THRB, NR1A2; thyroid hormone receptor beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1782448 lncRNA downstream 13156 49316277 ~ 49319527 (-) False G1557993
TU1782445 lncRNA downstream 13506 49262657 ~ 49319177 (-) False G1557993
TU1782543 lncRNA upstream 4223 49477352 ~ 49477569 (-) True G1558076
TU1782589 lncRNA upstream 71184 49544313 ~ 49544584 (-) True G1558118
TU1782606 lncRNA upstream 107845 49580974 ~ 49581482 (-) True G1558134
TU1782611 lncRNA upstream 113214 49586343 ~ 49586880 (-) True G1558139
TU1782624 lncRNA upstream 137557 49610686 ~ 49611260 (-) True G1558152
XM_021572313.2 mRNA downstream 35340 49295572 ~ 49297343 (-) False LOC110496424
XM_036952995.1 mRNA downstream 35340 49295572 ~ 49297343 (-) True LOC110496424
XM_021572308.2 mRNA downstream 123200 49203985 ~ 49209483 (-) True LOC110496421
XM_021572309.2 mRNA downstream 128795 49201226 ~ 49203888 (-) False LOC110496422
XM_036953006.1 mRNA upstream 294011 49767140 ~ 49784144 (-) False LOC110496426
XM_036953002.1 mRNA upstream 294011 49767140 ~ 49796975 (-) False LOC110496426
XM_036953003.1 mRNA upstream 294011 49767140 ~ 49796975 (-) False LOC110496426
XM_036953004.1 mRNA upstream 294011 49767140 ~ 49796975 (-) False LOC110496426
XM_036953005.1 mRNA upstream 294011 49767140 ~ 49796975 (-) True LOC110496426
TU1780876 other downstream 975836 48356613 ~ 48356847 (-) True G1556577
TU1780583 other downstream 1349074 47982883 ~ 47983609 (-) True LOC110496401
TU1780537 other downstream 1387109 47904839 ~ 47945574 (-) True LOC110496837
TU1779770 other downstream 1786112 47543560 ~ 47546571 (-) False G1555543
TU1779304 other downstream 2419768 46911977 ~ 46912915 (-) True G1555168
TU1783089 other upstream 494767 49967896 ~ 49968608 (-) True G1558535
TU1783125 other upstream 549962 50023091 ~ 50034141 (-) True LOC110496434
TU1783393 other upstream 883140 50356269 ~ 50359030 (-) True LOC110496438
TU1783548 other upstream 963868 50436997 ~ 50437459 (-) True G1558916
TU1783852 other upstream 1149962 50623091 ~ 50623983 (-) True G1559205

Expression Profile