RNA id: XM_036953002.1


Basic Information

Item Value
RNA id XM_036953002.1
length 6182
RNA type mRNA
GC content 0.50
exon number 36
gene id LOC110496426
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 49767140 ~ 49796975 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACGCTGTTGGGATTGTCGCCGTGCGGATGGTGGAGCCGGATGGAGGCAGGCGGCGGTGTTTTTATTTCTGAATGAACATTTAGGGTATTAAATTACAGCCGTATTAAAAAACTATTTTATTTATACATTATTTCAATTGATTTTGTACTACATGAAATGTTGTGAAACTATTTAACGTTTGGAATTTGTACAGTAATTTATAAATCTAGGCAAGTAGCAAGCAAGCTTTGTTGAGGATTTCAGGCCTAGTTCTAACCACCGCTCGTCGATTTTAACAATAGCCGCGATACACTCCCTCATCCGGGACTATTTTGACAAGACATTTTTCAACTGGTACGAACACAGAAAATATCTCAATGTGGTCCGTTGACTGAAATAATTCCTGAGTTTATGGACTATATTGTATGCAGGACTTTTCAGTATTTTATCTGCTAGTAGCATCACGAACATTTAGGGAAACAAAAGGAAGATGTCCAACGGCGCAGCAGGAAGCGGGGGTCTGACTTGGGTGACCCTCTTTGATAAGAAGAATGCTGCcaaaaagagggaggaggaggcagccGCGGCGGCGGCAGCTGCGAACGGCAGGGGTGATGGGGGCAAggcggagggaggaggaggaggaggaggaggagccaaGAAGAAGGGAGGAGATAAGATGTCAGTGGAGAGGGTGTACCAGAAGAAGACCCAGCTGGAGCACATCCTACTGAGGCCAGACACCTACATCGGCTCTGTGGAACCTGTCACCCAGCAAATGTGGGTTTTCGATGAAGACCTTGGGATGAATCTACGAGAAATCACTTATGTCCCTGGATTATACAAAATCTTTGATGAAATTCTTGTCAACGCAGCTGACAACAAACAGCGGGATAAGAGCATGTCAACCATAAAGATCTCCATTGATCCTGAGTCCAACACCATCAGCATCTGGAACAATGGTAAAGGCATCCCTGTGGTGGAACACAAAGATGAGAAGATGTACGTTCCCGCTCTCATCTTCGGACACCTCCTCACCTCCAGTAACTACGACGACGAGCAGAAGAAAGTCACAGGTGGAAGGAACGGGTACGGTGCTAAACTCTGCAACATCTTCAGCACAAAGTTCACAGTGGAAACCGCCTGCAAGGAGTACAAACACAGCTTCAAACAGaCTTGGCAGAACAACATGGGGAAGACGAGCGACTCCAAGATCAAGTTCTTTGACGGGGACGACTTCACGTGCGTGACCTTCCAGCCGGACCTGTCCAAGTTCAAGATGGAGAAGCTGGACAAGGACATCGTGGCTCTGCTCACCAAGAGGGCTTACGACATCGCTGGGTCCTGCAAGGGCGTCAAAGTCATGCTCAACGGGAAGAAACTCCCTgtGACAGGATTCCGCAGCTATGTGGACCTGTACGTGAAGGACAAGCTAGACGAGGTGGGCGTGGCTTTGAAGGTGGTCAACGAGTCGGTCAACGAGCGCTGGGAGGTCTGTCTCACCATGAGTGAGAAGGGATTCCAACAGATCAGCTTCGTCAACAGTATCGCCACCACCAAGGGTGGCAGACACATTGATTATGTGGTGGACCAGATCGTAGCCAAGCTGATAGAAGTGGTGAAGAAGAAGAACAAAGCTGGTGTCTCAGTCAAACCCTTCCAGGTGAAGAACCACATCTGGGTGTTTGTGAATGCGTTGATCGAGAACCCGACCTTTGACTCCCAGACCAAGGAGAACATGACCCTCCAGACCAAGAGCTTTGGTTCTAAGTGTCCTCTGTCTGAGAAGTTCATCAGAGCAGCGACCAACTGTGGCATCGTGGAGAGTATCCTGAACTGGGTCAAGTTCAAGGCCCAGACACAACTCAACAAGAAGTGTTCTTCAGTGAAGTACAGCAAGATTAAAGGCATCCCCAAGCTTGACGACGCCAACGATGCTGgtggtaaacaCTCGTCAGAATGCACTCTGATCCTGACTGAGGGAGACTCGGCCAAGTCCTTGGCCGTCTCCGGCCTTGGTGTCATTGGGCGAGATCGCTATGGTGTCTTCCCACTACGAGGAAAAATTCTGAACGTACGAGAGGCCACACACAAACAGATCATGGAGAACGCAGagatcaacaacatcatcaagATCGTGGGTCTGCAGTACAAGAAGAGCTACGAGGACCCAGAGTCTCTGAGATCCCTACGCTACGGCAAGATCATGATCATGACCGATCAGGATCAAGATGGCTCCCATATCAAGGGTTTGCTCATCAATTTCTTCCATCACAACTGGCCATCCCTGCTCAAACACACCTTCCTGGAGGAGTTCATCACGCCCATCGTCAAAGTGAACAAGAATAAACAGGAGCATGCTTTCTACAGCATTCCAGAGTTTGACGAATGGAAGAAACAGACGGTCAACTTTAAAACCTGGCATATAAAGTACTACAAAGGTTTGGGTACCAGCACAAGCAAGGAGGCCAAGGAGTACTTTGCAGACATGGAGAAACACCGGATCATGTTTAGATACGCCGGGACAGAGGACGACGCTGCCATCACACTGGCGTTCAGTAAGAAGAAGACTGACGACAGGAAGGAGTGGCTCACCAACTTCatggaggacaggagacagaggaggatgcACGGCCTGCCAGAGCAATACCTGTACGGCACGCAGGCGAAACACCTGTCCTACAACGACTTCATCAACAAAGAACTCATCCTCTTCTCCAACTCTGACAACGAGAGATCCATCCCATCCTTAGTGGACGGTCTGAAGCCAGGTCAGAGAAAGGTACTCTTCACCTGTATGAAGAGGAATGATAAGAGGGAGGTGAAGGTGGCTCAGCTGGCTGGTTCAGTGGCAGAGATGTCTGCCTACCATCATGGAGAGCAATCCCTGTTGATGACAATTGTGAACTTGGCCCAGAACTTTGTGGGCAGCAACAACGTGAACATCCTGCAGCCGCTGGGTCAGTTTGGTACCCGCATCAATGGGGGCAAGGATGCTGCCAGCCCCCGTTACATCTTCACCATGCTCAGTCCCCTGGCCAAGATGTTGTTCCCAGCGGTGGACTCCAGCCTGCTGAAGTTCCTGTTCGATGACAACCAGAAGGTGGAGCCAGAGTGGTACATCCCCATCCTCCCTTTGGTGCTGGTGAACGGGGCCGAGGGCATCGGGACGGGCTGGGCCTGCAAGATCCCCAACTACGACCACAGAGAGATAGTCAACAACCTGTACCGCATGCTCAACATGCAGGACCCTCTGCCCATGCTGCCCAGCTATAAGAACTTTAAAGGAGTGATCCATGAGTTGGGTCAGAACCAGTACATGGTCAGTGGCGAGATCTCTGTCCTGGACAAGAACACCATTGAGATCACTGAGCTGCCCGTTCGCACCTGGACACAGgcctACAAGGAGTCGGTACTAGAGCCCATGCTCCAGGGGACAGAGAAGACTCCAGCTCTGATTAatgactataaggagtaccacaCGGACCAAACCGTCAAGTTTGTAGTCCGTATGTCTGAGGAGAAGCTGGCCCAGGCAGAGGCTGCTGGACTACACAAAGTCTTCAAGCTACAGTCCAGCCTCACCTGCAACTCCATGGTGTTGTTTGACCACATGGGCTGTCTGAAGAGGTATGACTCGGTCCAGGACATTCTCAAGGAGTTCTTTGAGCTGCGGTTGCACTACTACAAGCTGAGGAAGGATTGGCTTGTGGGGAGCCTGGGGGCGGAGGCTTCCAAACTGTCCAATCAGGCACGATTTGTGCTGGAGAAGATCGAAGGAAAGATCACAATCGAGAACAAGTCTAAGAGGGAACTGATCAGGATGCTGGTGCAGAAAGGCTTTGAGTCGGACCCAGTGGCGGCATGGACCAAGGCACAGGAAAAGGCTCTGGAGGAGGACGATCATGATGGTAACAACAGTGACAGCTCTGTGGACTCTGGGTCGTCGTCGGGACCAAACTTCAACTACATCCTCAACATGCCTCTGTGGTGCCTGTCCAAGGAGAAGGTGGACGAGCTGCTCCGACAGAGAGACATCAAGAAAGGAGAGTTGAATGAGCTGCAGAGGAAGTCTCCTGAGGACCTGTGGAAGGAGGACCTGGCTGTCTTCATTGAGGAACTGGATAAAATCGAGGCCCAGGAGCAGGCAGACATATGTGCAGGTAGAGGCACCAAGCTGGTGAAGGGCAAGGTGGGCAAGCCCAAGGTGAAGAAACTACACCTGGAGGAAACGTTACCCTCGCTGTACGGCCGCAGGGTCGTGCCCACCATCACACAGGCCATGAAGACTGACGCCTCCAAGAAGATGACCAAGAAGAagaagGGTGATGCGGACCTGGTGATGAAGCTGGAGTTTGATGATGAGATGGGAGTACTGGGATCAGACGGAGGAACAGGGGAGAACTCCCTCAACTCCTCCTCTAATacaccagccccaaccccagccaaGCCCAAGGCCCCCCGGGTCAAACGGGAGAAGAAGGAGCCAGGTACTCCAAGAGCCAGGAAACCCCCAGCACCCAAAGGATTGTCTGGTAAGAAGGTGAAGAAGCGTAACCCCTGGTCGGAGGATGAGTCCAAATCAGAGAGCGATCTGGAGGACAGTGAACCTGTAGTCATTCCCCGAGACACCAAGTCACAACGGGCCTCAGCGGTCAAGCCCAAGTACACCTTTGATTTCAgtgaggaagaggatggaggagaggaagaggaggaggatgatgaagatGCTGCATCCTCGCCCGTCCGGCCCTGCAAAGACGACTTCACTGCCTCCTCCGAGATTAAAGACCGATACAACGACCACAGCGCCAATGACGAGGATGATGAAGATATCTTCCCCCCGCCCAAACAGACAACCACCACCGTCTCACCAGCAAAGAAGAAGGAACCAGAGAGTATATTCTCTTCCTCCAAATCAGCCTTCTCCTCTGAAAAGAGCAATGACAGTGACGATCTGAAGTTGGACAGTGACGAGGAAGACAAGGCCTTCTCCTCCTACTCCAGCAGCTCTGCCTTCGACAAACCTGTCCCAGCTAAGAAAGGACAAGAAGCAGCCCGGTCTCAACAAGACGCACAATACTCAGCTAAGAAGCTGTCGGATGCAGCTCTTAAACCCAGGAAAGCACCAACGCCCAAAACGCCACCAAAACAGAAGCTTGACACGTCTGTCTGGGACTCTGACTCCGATACCGGCTCCAAGAAGCCTTCACCAGCACTCAAAGGTAAaagtggagggaggaagaggaagcagTCTGGATCTGAAGAGGATGATTTCAGTCCCAAGAAGACACCTGGGAAAGCACCCAAAACCCCTGCCAGCAGGAAGCCATCAAAGAAAGTAGCCGTGACCCCGCCCCCCAtgtcagatgatgatgatgtggacTCCAACCGTTTCAGCCAATCCAGCGTGGCGTCCCGAGAACGACCGGGCAGAGGCAGGGCCAAGAAGGAAGTGAAGTACTTTGCTGAGTCAGGGTCAGACGATGATCAGTACGACATGTTTGAGTAGACCATGGAATCCCTCCCACACACAGGCTCTGTTCCAGTGCTATTTAAAtgcttcctccctcccttgtagtaatcacagatcttcattggtTGGACTGGGGAAAGTGATAGGTTGGTACCCTTGCTGTCACCTATCCAATCACTTATGCTCTGTGACCACCTCTAGGAAATCAGGAAGGACGGATTTTTAAACAATTTGAACAGAGCTATTTACACACCGCTTGAGTAATTTTAACGTCCATCCTTCCTTCTTCACTTCCTAGAAGAAATCATCTGAGAGGTGGGGGATAGGTGGAAGCAGTGGTGGTGTACCTATCCAGTCATGTCCGATCAGTGATTATTTCAAAGTAGAAAGGAAGGATTTCGTTTTGAAGTATTCAACCAGGACCAGACACACGCTCGTGGAAATACCCGTGCTGCAGACTTTTGtacatcccccccccctctcttttattttattttaatggtgACGTTTAATGCTTTCTACTGTGTAGGTGTTTTACACTTTTTATTATACATACAATACAattttgttttttattattaCCATGGAAATGTTCTGTATTTGTCCTAAGCAGCTTTTAGAAGTTAGGAACGCGGTGCTTCAGCACATTTTAACTGTTAAAAAGTCAAAGAGACAATGTACCTTTTTGAACAAGAACTTGGAAGTAAACAATGAAATGTAAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1782706 lncRNA downstream 14048 49746279 ~ 49753092 (-) False G1558215
TU1782709 lncRNA downstream 14048 49746279 ~ 49753092 (-) True G1558215
TU1782675 lncRNA downstream 62795 49697669 ~ 49704345 (-) True G1558196
TU1782677 lncRNA downstream 63358 49690614 ~ 49703782 (-) False G1558196
TU1782628 lncRNA downstream 146552 49620389 ~ 49620588 (-) True G1558156
TU1782749 lncRNA upstream 50188 49847163 ~ 49847426 (-) True G1558254
TU1782996 lncRNA upstream 79533 49876508 ~ 49884470 (-) True G1558459
TU1783002 lncRNA upstream 124222 49921197 ~ 49922691 (-) False G1558460
TU1783004 lncRNA upstream 124222 49921197 ~ 49922657 (-) False G1558460
TU1783006 lncRNA upstream 124222 49921197 ~ 49922657 (-) False G1558460
XM_036953001.1 mRNA downstream 294011 49332683 ~ 49473129 (-) True LOC100135978
XM_036951069.1 mRNA downstream 369673 49380856 ~ 49397467 (-) True LOC118940996
XM_036952998.1 mRNA downstream 417211 49332681 ~ 49349929 (-) False LOC100135978
XM_036952999.1 mRNA downstream 417211 49332681 ~ 49349929 (-) False LOC100135978
XM_036953000.1 mRNA downstream 417211 49332681 ~ 49349929 (-) False LOC100135978
XM_021572330.2 mRNA upstream 176479 49973454 ~ 49982568 (-) False LOC110496431
XM_021572331.2 mRNA upstream 176479 49973454 ~ 49982570 (-) True LOC110496431
XM_036953014.1 mRNA upstream 226112 50023087 ~ 50034167 (-) False LOC110496434
XM_036953016.1 mRNA upstream 308307 50105282 ~ 50141405 (-) False LOC110496842
XM_036953015.1 mRNA upstream 308307 50105282 ~ 50143368 (-) True LOC110496842
TU1780876 other downstream 1410293 48356613 ~ 48356847 (-) True G1556577
TU1780583 other downstream 1783531 47982883 ~ 47983609 (-) True LOC110496401
TU1780537 other downstream 1821566 47904839 ~ 47945574 (-) True LOC110496837
TU1779770 other downstream 2220569 47543560 ~ 47546571 (-) False G1555543
TU1779304 other downstream 2854225 46911977 ~ 46912915 (-) True G1555168
TU1783089 other upstream 170921 49967896 ~ 49968608 (-) True G1558535
TU1783125 other upstream 226116 50023091 ~ 50034141 (-) True LOC110496434
TU1783393 other upstream 559294 50356269 ~ 50359030 (-) True LOC110496438
TU1783548 other upstream 640022 50436997 ~ 50437459 (-) True G1558916
TU1783852 other upstream 826116 50623091 ~ 50623983 (-) True G1559205

Expression Profile