RNA id: XM_036953014.1


Basic Information

Item Value
RNA id XM_036953014.1
length 1631
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC110496434
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 50023087 ~ 50034167 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCACTTGGACATTCCGATTACAACGGGAACAATAAGCAGAGTGCTAAGGAGGGTCATAGGGGAACGTTTGAAAGTAATATCGACCATATGCAAAATACCACTACGGATGTTAGTCATCACACAGCTCCGAGGAAGTACATGTCAAGTAAATGTACTTGATTTAAAGCGAATTAAGATACCTGTCGCACTTCTACCCCTTGCTATATAACCTAGTGCAGTACTACAGTGTGGTCACAAAGACCCAACAGGACCAAGGTGTAGGCGCTGTAGAGCGGCAGAGCGCGCGGACTGGAGCAGAGAGGGAACTGAGCGGAGGTTTCAACCAAGGAAGGAACATTTCATTTTTGCGTACGCTTAAGACACTTATGTGGAGAGGAGACGATACCAATTTCCGCAGGTGTAAACATCGAGCTCTCAAAAGTCAGAGAGGGgttgaaaaacatttaaactcagtgtaCAAGTGCTTTAATAGCCTatttatactttttaaaataGAAACAAACGAAGAAAGAATAGTTTTAGGGCGGAACAGTTGCGCGCAACAGATAGCTGCATCATGAAATTACTTCTACCGCTTGTGATAGCTTTTATTGCTATTGCccaatttttttgtgaagaaattGGTCCAAAAGAAGATCTTGATTATTGGACAAACGATCAAATTACGGACGAGTGGCTGTCGTCTGACCCGTTCAGAGAGATACTGCGGAGGATGACGCGGAAACCGCGGCCTCATCAGTTCTTTGGCCTGATGGGGAAACGCTCCTCCGCGAATGCACAGATAACCCGAAAAAGGCATAAAATTAACTCCTTTGTTGGATTGATGGGCAAGAGGAGCCAAGACGAACCAGATTCATTTGAGTGGAACACACAACAGAACTACAACAAGCGCCGCTAACCAGTTAATCTGTATCCAGTCCTCTGCTATTGGTCCGCTTCTCAACAAGTCATTCCTACAGAAGATCGGAAGGGGTGTCTGATGCGTAGTTTTGTTTCCTCCAAAATATGTGTCGTCAAATTGATTGTAATTCCCGTAATAAAATGTCTGTTTCCACATCGTGTTGATGTAGCTGTACTGTACCTGACTGTGCCAATTTGACTTGTTCAGGAAGAATGCAGGAGTGTGATCTGAATAGGGTTACAAAATTCTGTTAGTTTTCCCAATCATTCCCAGGTTTTCTAGAAATTCCGGTTTGAAGATTGGAATTAGATGGGAAATCATAAAACTGACATTGTCACCCTCGGTGTGAACTGATACTGCTACCGTACCTTACAGAAACATTATGTTATTTAATGTATGTCAAACTATTTTAGTACCATCACCATATCATCGGTTCCAGAGAATACTGTTGTCGTGGACCATCAAAGCAAAGCTCTACCCCAGGGTATGTAGAAAATTGCACTGCCAATCCCACTGTCTAGTGCCTCAACTGTTTTAATCACAACTGATTGTTCTGTAAATAAACTAAATACTCTGGTACACTACAGACATGCTGCTCCATCAGGACATGCTCTCATTTAAATTGACTGTAAATCAAACTGTCATGTTTATGAAACCAAGACGTATGGTATGACAGAATACTTGTATGTAATTGTGGCTTGATATATTAAAACTATTTTCTTTATTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1783113 lncRNA downstream 16509 50006344 ~ 50006578 (-) True G1558557
TU1783107 lncRNA downstream 21105 49992109 ~ 50001982 (-) True G1558551
TU1783010 lncRNA downstream 100396 49921197 ~ 49922691 (-) False G1558460
TU1783011 lncRNA downstream 100396 49921197 ~ 49922691 (-) True G1558460
TU1783007 lncRNA downstream 100430 49921197 ~ 49922657 (-) False G1558460
TU1783207 lncRNA upstream 116731 50150898 ~ 50151114 (-) True G1558639
TU1783217 lncRNA upstream 123632 50157799 ~ 50158258 (-) True G1558649
TU1783209 lncRNA upstream 125520 50159687 ~ 50164221 (-) True G1558641
TU1783270 lncRNA upstream 210774 50244941 ~ 50245230 (-) True G1558698
TU1783271 lncRNA upstream 211387 50245554 ~ 50245787 (-) True G1558699
XM_021572331.2 mRNA downstream 40517 49973454 ~ 49982570 (-) True LOC110496431
XM_021572330.2 mRNA downstream 40519 49973454 ~ 49982568 (-) False LOC110496431
XM_036953002.1 mRNA downstream 226112 49767140 ~ 49796975 (-) False LOC110496426
XM_036953003.1 mRNA downstream 226112 49767140 ~ 49796975 (-) False LOC110496426
XM_036953004.1 mRNA downstream 226112 49767140 ~ 49796975 (-) False LOC110496426
XM_036953016.1 mRNA upstream 71115 50105282 ~ 50141405 (-) False LOC110496842
XM_036953015.1 mRNA upstream 71115 50105282 ~ 50143368 (-) True LOC110496842
NM_001165089.2 mRNA upstream 114137 50148304 ~ 50149605 (-) True rfa3
XR_005037496.1 mRNA upstream 117856 50152023 ~ 50197214 (-) True LOC118941183
XM_036953024.1 mRNA upstream 221854 50256021 ~ 50359132 (-) False LOC110496438
TU1783089 other downstream 54479 49967896 ~ 49968608 (-) True G1558535
TU1780876 other downstream 1666240 48356613 ~ 48356847 (-) True G1556577
TU1780583 other downstream 2039478 47982883 ~ 47983609 (-) True LOC110496401
TU1780537 other downstream 2077513 47904839 ~ 47945574 (-) True LOC110496837
TU1779770 other downstream 2476516 47543560 ~ 47546571 (-) False G1555543
TU1783393 other upstream 322102 50356269 ~ 50359030 (-) True LOC110496438
TU1783548 other upstream 402830 50436997 ~ 50437459 (-) True G1558916
TU1783852 other upstream 588924 50623091 ~ 50623983 (-) True G1559205
TU1783839 other upstream 601236 50635403 ~ 50650253 (-) True thsd7aa
TU1785000 other upstream 1178988 51213155 ~ 51214144 (-) True LOC110496463

Expression Profile