RNA id: XM_021572346.2


Basic Information

Item Value
RNA id XM_021572346.2
length 3521
RNA type mRNA
GC content 0.54
exon number 20
gene id LOC110496438
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 50256021 ~ 50359132 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCATCTGAAACACCGTTCGACGGCTACCATGGTTACAACATCACTTTGTGCTGAACGTCACCACTTCTTGTGGCTAACGTTGTGCACATAACATTTTGAGGAGGCGTTCTTTGTGACATTGTTCAATCAAGTAAAAACGAGAAAACGGATAAAtGGACCGTGGGTCGAAGCACAGGCAGGTGAAGCCTCTGGCTGCCTCTCTGCTGGACGCCTTAGATTATGACAGCTCAGACGACAGTGATTTCGaagtgggagacgcagatgcctCAGgGTCAGAGGGTAGTGCCATTGGGAGTGATGAGGAGGGGTCCAAGGAGGAGAGCGCTGCTGAGGACTCTGAAAACGACAGCGACTCTGACAACATCGGCTCTGCAATGGACGGTGAGGAACAGACCAAGGAGCTGACAGGTGACGACACCCccacagaggaagaggagaggaccaAGGAAGAGCAGCCGTCCTCTGACActagcaccaccaccactaaagACCCTGCTCAATCAGGGGTGCCCAAGGGccgacggaggagagaggagaaggcctCGGACACAGAGGCTGGGAGTGGAGGAAGCGAGAGTGGCACAGGTCGTGGTAATGTGGGTAGTGGTAATGTGGTAGTGGTAATGCGGAGGACGGCCGCGACACAGGAGCCCAAGAAGTGGAACCTGCGTTGTAAACGCCCTATGCTGGACTTCACCACCATGGAAGAGCTCAACGAGATGGACGACTACGACAGCGAAGACGACAATGACTGGAGGCCCACCTccggcaagaagaaagccaagaCGGCGGCCACTCAGAGAGGAGgaagcgagggagaggaggaggcggaggaggaagATGACGACGGAGGGAGCGGTAGTGAGGATGATGACAacgatggtggtgatgatgaagatgagAACGAAGAAGGGAGCAGTAGCGACAGTGATAAAGAGGTGAAGAAACCCAATAAGAAAGTGATAAGCAGCAGTGTGTTTGACAAGGAGCTGACCAATGACAGCATGTCACAGGGAAAGAGCAACAAGGATGCCCTGCTGGAGCGTGCCCAGGTGTGGAGCGCGGTGGCCCAGAGGATGGAACACATCCTGATCTGCTGCGTGTGTCTGGGAGACAACAGCGAGGACGCTGACGAGATCATCCAGTGTGACAACTGTGGTGTGACTGTACACGAAGGTTGCTATGGAGTGGACGGTGAGAGCGATTCCATCATGAGTTCTGCCTCGGAGAACTCTACGGAACCGTGGTTCTGTGATGCCTGCAAGAACGGAGTCACGCCCAGCTGTGAGCTCTGCCCCAATCAGGACGGGATCTTCAAAGAGACTGACGCTGGGAGATGGGTCCATGTGGTTTGTGCGCTCTACGTCCCTGGAGTAGCGTTTGGGGACATTGATAAACTACGACCAGTGACTCTCACAGAGATGAACTACTCCAAGTATGGGGCCAAGGAGTGCAGTTTCTGCGAGGACACCCGGTTCGCCCGCACAGGCGTGTGTATCAGTTGTGATGCTGGCATGTGCCGATCCTACTTCCATGTGACCTGTGCTCAGAGGGAGGGGCTTCTCTCCGAGGCAGCTGCGGAGGAGGACATAGCTGATCCCTTCTTTGCGTACTGTAAGCAGCATGCGGACCGCTATGACAGGAAGTGGAAGAGGAAGAACTACCTGGCTCTCCAGTCCTACTGCAAGGTGTCTCTACAGGACAAAGAGAAGCAGTTGGCCCCCGAGGCACAGGCCCGTATTACCACCCGGCTGCAGCAGTACCGGTCCAGGGCAGAGCTGTCCCGTAACACCCGGCCCCAGGCCTGGGTCCCCCGGGAAAAGCTGCCGCGACCCCTGACCTCCAGCGCCTCCGCCATCAGGAAACTCATGAGGAAGGCTGAGCTCATGGGCATCAGcaCGGACATCTTCCCCGTAGACACGTCAGACATCAGCGCCAGTGTGGACGGACGCAGGAAACACAAGCATCCCGCCCTCACTGCAGACTTCGTCAACTATTACCTGGAGAGGAACATGAAGATGGTGCAGATCCAGGACAATATCTCTGAGCAGAAGAGCCTCAAAGACAAGCTGGAGAGTGAGCAGGAGAAGCTGCACGTCGACTACAACAAGCTGTGTGAGTCTCTGGAGGACCTGCAGAATGTCAACGGTGTTCTGAGGAGTGAGGGCCAGGTCATATGGATCATGCTGGGAGGAATCCTAGGACAGAAACTGAACTCCCCGTCGGTCCTGAAAGCCCCTAAAGAGAGGAAGCCCAGCAAGAAGGAGGGAGGAGCTCCTGGGAAGTCCTCCAACCTACCAGCTGTCCTCTAcagCTGTGGGATCTGTAAGAAAAACCAGGACCAGCATCTCCTGCTCCTGTGTGACACCTGCAAGCTCTACTACCATCTGGGCTGTCTGGAGCCTCCGCTGACACGCATGCCCAAGAAGACCAAGAACAGCTactggCAATGTTCAGAGTGTGACCAGGCCAGTAGCGATGATGCCGACATTGCCATGGAGACCCTGCCCGACGGCACCAAAAGGTCTCGGAGACAGATTAAAGGACCAATCAAATTCATCCCTCAGGAGATGTCCCCAGAGCCCAAGAAACGAGATGTGAGGGGCACGAGAACCAGAgggcagaagaggaagagggtgtCCGTCTGTGAAGAAGAAAAGTTTGAGGTGCAGGAACCGGCTCTACGGGAGCGGCATCAGCGCCAGTCTGCGATGCAGAAGAAGACACCTAAAGCAGACGACACCAGGACCGACTGTACATCCTGCAAAGGACCTGGGGACAACGAGAACCTCGTCAGGTGTGATGAGTGTTGTCTGTGCTACCACTTTGGCTGTCTGGACCCTCCCCTGAAGAAGTCTCCCAAGCAGACAGGATATGGCTGGATCTGCCAGGAGTGTGACACTTCCTCctccaaggaggaacatgaggaggACGAAGAGGACGATTCTGTCCAAGAGGAAACGACAGAGCACAAATTCCCATACGAAGTTCCCaactgaaacaaaaacaacagTTTTACCATATCTTGAGCACAATGATCAAATGTTAGTGGTCACCGGATGGTCAGTGTCGTCAATTCCGCTTGAAAGATCTGTAGCAAACAGGACAGTCTGCAGTGTCTCACCGTTTTACTGCCATTACTGCTCatctctagcctggtcccagatctgtttgtgctttctTGCAGCTAATGACTACACAACCACAAGATGgcccaaacagatctgggaccatgcTAACTCATCTTTTCTCTTCAGTAAGATATGGGACAGAGCACAGAGGTACTACTCACGTTAGTTTTGTAGCCAGAGGAACAGTATATTTTAGAGAACAGAATGCATTTGGTGATCTTTTAGAGGGAATAGTATGTATTTTCTAACGGGACAGGGCTGAACCCTCACACTCGCTATGGTAACTGGAGATGTcactgatacagtgccttgcgaaagtattcggcccccttaaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1783301 lncRNA downstream 93 50255547 ~ 50255929 (-) True G1558713
TU1783299 lncRNA downstream 616 50255080 ~ 50255406 (-) True G1558711
TU1783296 lncRNA downstream 1859 50253707 ~ 50254163 (-) False G1558709
TU1783463 lncRNA upstream 11509 50370641 ~ 50370910 (-) True G1558841
TU1783509 lncRNA upstream 39714 50398846 ~ 50401375 (-) True G1558877
TU1783537 lncRNA upstream 64853 50423985 ~ 50424198 (-) True G1558905
TU1783549 lncRNA upstream 78586 50437718 ~ 50438278 (-) True G1558917
TU1783567 lncRNA upstream 93009 50452141 ~ 50452376 (-) True G1558935
XR_005037496.1 mRNA downstream 58808 50152023 ~ 50197214 (-) True LOC118941183
NM_001165089.2 mRNA downstream 106417 50148304 ~ 50149605 (-) True rfa3
XM_036953015.1 mRNA downstream 112654 50105282 ~ 50143368 (-) True LOC110496842
XM_036953016.1 mRNA downstream 114617 50105282 ~ 50141405 (-) False LOC110496842
XM_036953014.1 mRNA downstream 221855 50023087 ~ 50034167 (-) False LOC110496434
XM_036953027.1 mRNA upstream 184247 50543379 ~ 50592411 (-) True LOC110496443
XM_021572358.2 mRNA upstream 240823 50599955 ~ 50755992 (-) False thsd7aa
XM_021572364.2 mRNA upstream 638391 50997523 ~ 51012139 (-) False LOC110496448
XM_021572365.2 mRNA upstream 638391 50997523 ~ 51012139 (-) True LOC110496448
XM_021572367.2 mRNA upstream 687270 51046402 ~ 51049503 (-) True LOC110496450
TU1783125 other downstream 221881 50023091 ~ 50034141 (-) True LOC110496434
TU1783089 other downstream 287414 49967896 ~ 49968608 (-) True G1558535
TU1780876 other downstream 1899175 48356613 ~ 48356847 (-) True G1556577
TU1780583 other downstream 2272413 47982883 ~ 47983609 (-) True LOC110496401
TU1780537 other downstream 2310448 47904839 ~ 47945574 (-) True LOC110496837
TU1783548 other upstream 77865 50436997 ~ 50437459 (-) True G1558916
TU1783852 other upstream 263959 50623091 ~ 50623983 (-) True G1559205
TU1783839 other upstream 276271 50635403 ~ 50650253 (-) True thsd7aa
TU1785000 other upstream 854023 51213155 ~ 51214144 (-) True LOC110496463
TU1785112 other upstream 1023540 51382672 ~ 51455285 (-) False G1560339

Expression Profile