RNA id: TU1783393


Basic Information

Item Value
RNA id TU1783393
length 683
RNA type TUCP
GC content 0.56
exon number 4
gene id LOC110496438
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 50256021 ~ 50359132 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGCGTTCTTTGTGACATTGTTCAATCAAGTAAAAACGAGAAAACGGATAAAtGGACCGTGGGTCGAAGCACAGGCAGGTGAAGCCTCTGGCTGCCTCTCTGCTGGACGCCTTAGATTATGACAGCTCAGACGACAGTGATTTCGaagtgggagacgcagatgcctCAGgGTCAGAGGGTAGTGCCATTGGGAGTGATGAGGAGGGGTCCAAGGAGGAGAGCGCTGCTGAGGACTCTGAAAACGACAGCGACTCTGACAACATCGGCTCTGCAATGGACGGTGAGGAACAGACCAAGGAGCTGACAGGTGACGACACCCccacagaggaagaggagaggaccaAGGAAGAGCAGCCGTCCTCTGACActagcaccaccaccactaaagACCCTGCTCAATCAGGGGTGCCCAAGGGccgacggaggagagaggagaaggcctCGGACACAGAGGCTGGGAGTGGAGGAAGCGAGAGTGGCACAGGTCGTGGTAATGTGGGTAGTGGTAATGTGGTAGTGGTAATGCGGAGGACGGCCGCGACACAGGAGCCCAAGAAGTGGAACCTGCGTTGTAAACGCCCTATGCTGGACTTCACCACCATGGAAGAGCTCAACGAGATGGACGACTACGACAGCGAAGACGACAATGACTGGAGGCCCACCTccggcaagaagaaagcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1783392 lncRNA downstream 34938 50314402 ~ 50321331 (-) False LOC110496438
TU1783391 lncRNA downstream 41283 50314348 ~ 50314986 (-) False LOC110496438
TU1783425 lncRNA downstream 47221 50306757 ~ 50309048 (-) True G1558804
TU1783404 lncRNA downstream 90394 50264557 ~ 50265875 (-) True G1558784
TU1783301 lncRNA downstream 100340 50255547 ~ 50255929 (-) True G1558713
TU1783463 lncRNA upstream 11611 50370641 ~ 50370910 (-) True G1558841
TU1783509 lncRNA upstream 39816 50398846 ~ 50401375 (-) True G1558877
TU1783537 lncRNA upstream 64955 50423985 ~ 50424198 (-) True G1558905
TU1783549 lncRNA upstream 78688 50437718 ~ 50438278 (-) True G1558917
TU1783567 lncRNA upstream 93111 50452141 ~ 50452376 (-) True G1558935
XR_005037496.1 mRNA downstream 159055 50152023 ~ 50197214 (-) True LOC118941183
NM_001165089.2 mRNA downstream 206664 50148304 ~ 50149605 (-) True rfa3
XM_036953015.1 mRNA downstream 212901 50105282 ~ 50143368 (-) True LOC110496842
XM_036953016.1 mRNA downstream 214864 50105282 ~ 50141405 (-) False LOC110496842
XM_036953014.1 mRNA downstream 322102 50023087 ~ 50034167 (-) False LOC110496434
XM_036953027.1 mRNA upstream 184349 50543379 ~ 50592411 (-) True LOC110496443
XM_021572358.2 mRNA upstream 240925 50599955 ~ 50755992 (-) False thsd7aa
XM_021572364.2 mRNA upstream 638493 50997523 ~ 51012139 (-) False LOC110496448
XM_021572365.2 mRNA upstream 638493 50997523 ~ 51012139 (-) True LOC110496448
XM_021572367.2 mRNA upstream 687372 51046402 ~ 51049503 (-) True LOC110496450
TU1783125 other downstream 322128 50023091 ~ 50034141 (-) True LOC110496434
TU1783089 other downstream 387661 49967896 ~ 49968608 (-) True G1558535
TU1780876 other downstream 1999422 48356613 ~ 48356847 (-) True G1556577
TU1780583 other downstream 2372660 47982883 ~ 47983609 (-) True LOC110496401
TU1780537 other downstream 2410695 47904839 ~ 47945574 (-) True LOC110496837
TU1783548 other upstream 77967 50436997 ~ 50437459 (-) True G1558916
TU1783852 other upstream 264061 50623091 ~ 50623983 (-) True G1559205
TU1783839 other upstream 276373 50635403 ~ 50650253 (-) True thsd7aa
TU1785000 other upstream 854125 51213155 ~ 51214144 (-) True LOC110496463
TU1785112 other upstream 1023642 51382672 ~ 51455285 (-) False G1560339

Expression Profile