RNA id: XM_036953027.1


Basic Information

Item Value
RNA id XM_036953027.1
length 2498
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110496443
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 50543379 ~ 50592411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCGCACGTCAGTAAATGAAAAGCTTTTCTGTCGAGCTTTAGTGGCTGTTTAAAGACTGCACTCTGTGATTCTTTCGTCTCGGACCGATCTCGCCCCGTTTTTTAATatttccctcgctcctctcctcccctccttcctcttctctctctctcatgttctgtgtggacagAGCGACGGAGTTTCTCTCAACCCAGATGTGTAATAGGCGCGCGTTTTCCAGAGGCTCGGTTATAAAGCGTCCGTTATTTATCCGACTACTTTCAACTGTTCTCCTTTTCGACAAAGAGCCAGCGAAGGGAAACTAGTGGAAGTTTGAGACCAGGAAGAATGCAGGCGACGTGTTGGTGTGCGGTGTTACTCCTGACGCCAGCGTTTTACTTGgtGACAAGTGTTCATGCTTCCAAGGCGGACCTCCTCAAGTCGGGCAGCCCCAAGTCGACGTTAAAACACATATGGACAGAAAGCAGCAAGGACCTGTCAATCAGCAGGTTGTTGTCACAGACTCTCCATGGCAAAGAGAACACCACAGCCCTGGACCTGCGCTACGACACCCCGGAGCCCTACTCCGAGCAGGACCTCTGGGACTGGCTGAGGAACTCTACCGACCTCCAGGATTCTAGAGCAAGAGCTAAGCGGCGGCCTATGGTCAAGACGGGCAAGTTCAAGAAGATGTTCGGTTGGGGAGACTTCCACTCCAACATTAAGACGGTCAAGCTCAACCTCCTCATCACCGGGAAGATCGTGGATCACGGCAACGGAACCTTCAGCGTCTACTTCAGACACAACTCCACAGGCCAGGGCAACGTGTCTGTGAGTCTCGTCCCACCAACCAAGGTCGTGGAGTTCGACGTGGCGGCCCAGCAGTCCGTGATTGACGCCAAGGACTCCAAGTCCTTCAACTGCCGCATAGAGTACGAGAAGGTGGAGAAGGGCGCCAGGAACACGCTGTGTAACTTCGACCCGTCCAAGACGTGTTACCAGGAGCAGACTCAGAGCCACGTCTCCTGGCTCTGTTCCAAGCCCTTTAAAGTCATCTGCATCTACATCTCCTTCTACAGCACTGACTACAAGTTGGTGCAGAAAGTCTGTCCGGACTACAACTACCACAGTGACACTCCTTACTTCCCCTCTGGCTGACCACTCCCACAACAACAATCCCAATGTGAAGGACCAGTAAGTTACAAAGCGgggcttcttcttctttttccccGCCCAGAGAAATATATGTTAGCTGTACTGTTCTGAAAATAAAAGAATGTGTAAAATGAATTGATTATCTATTTATGAAATTAAGACAATAGAGAAAGTAAAGACTTATGGGGCATTATTATTTTGTCTTTCAAGTGTTGTGCAAAAccattattattataaatataataattattatattaatattattagtATACAAATACTATGACTAAACAAATAATATTGATTATAATTCATTTGTTTTATAGATTTCATACCTTTTTTCATCAGTGATTTCATAGATGCATCATGTGTACATATTTGGGGTTGATAGTTCCATTTGTAACTAAGTAAAATCAGAATTTCAAATAAGTCTTATTAGTTTGTAACAACTTGTTAATGTTATCAATATGTTATATTCATTTTCTTGGTCCAGTTTGATTCTAGGTGCTTTAATTTTCTCCTTTTAGTATTTCTTACTTTGCTCCTTAGGGCCACCATACTTTCTGTATGAAAGTTCAGTTCTGTGAGCTACCAATTGGATGGCAGCATACATGATCCTATGTTTAGTTTGCACCTGCAATACTCTTCATTCATAGCAGCTCAATTCCGCTCTCTCAGAAATAACAGTCCAGACTCCTACCCTTGAAGGTCTACAAGATCCCCACACATTTCCAAATTCTTTGACCCCACAGTCGAGAGagctgaggaagaggagagtgtCAGTGTGCAATCCAAGTAGGTGGTCTTACCTAGCACTGACAGGATTCTCCCGCAGGCatgttttataaaaaaaataaaaataaacgcaTTTTACATGTTCAGGAATGATGCTGTTCAATCTTCAGCTTGTCCCTGTATAAGTCCTGGCTCAGATTATTATTAGCAAATCACAGCCTTATTAGGTTTATTGTTAATATTCAGTTGTGATTGATTGGGGGGCTTTGCTCATTGTCATTGACTTAATAAAAATTGTAATGTAATGAATTCTATATCTTAGAGAGCCTAATTTGTATGAATGGTTTGTATTGTACATAGTTTATCCTGAATTGAGCTGCGTCTGTATATGCCCACATAAAGCTGTCTCCCCCTtcccacaatctctctctctctctctctctctctctctcgctctctctctctctctctcttgtgaaTCCGTGAAAACAGCAACCCTGTACATACGCTGTAGAACTGTCTAAATATATTACAAGTATTCATCAAATGTATGACTTTTATTTCTGGGAGAAGGATGGGATGGAGGTGTACATATGAATAAAAATACTGTATGTTTTATCAGTTGAATGTT

Function

GO: NA

KEGG:

id description
K16656 NXPH1; neurexophilin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1783806 lncRNA downstream 11281 50531852 ~ 50532098 (-) True G1559159
TU1783799 lncRNA downstream 19481 50523655 ~ 50523898 (-) True G1559152
TU1783795 lncRNA downstream 25635 50517541 ~ 50517744 (-) True G1559148
TU1783760 lncRNA downstream 58230 50463966 ~ 50485149 (-) True G1559116
TU1783572 lncRNA downstream 88642 50454510 ~ 50454737 (-) True G1558940
TU1783837 lncRNA upstream 2997 50595408 ~ 50595621 (-) True G1559190
TU1783840 lncRNA upstream 7533 50599944 ~ 50600208 (-) False thsd7aa
TU1783838 lncRNA upstream 7894 50600305 ~ 50609595 (-) False thsd7aa
TU1783842 lncRNA upstream 17446 50609857 ~ 50610085 (-) True G1559195
TU1783843 lncRNA upstream 18173 50610584 ~ 50610810 (-) True G1559196
XM_036953024.1 mRNA downstream 184247 50256021 ~ 50359132 (-) False LOC110496438
XM_036953025.1 mRNA downstream 184247 50256021 ~ 50359132 (-) False LOC110496438
XM_021572345.2 mRNA downstream 184247 50256022 ~ 50359132 (-) False LOC110496438
XM_021572346.2 mRNA downstream 184247 50256022 ~ 50359132 (-) False LOC110496438
XM_021572347.2 mRNA downstream 184247 50256022 ~ 50359132 (-) False LOC110496438
XM_021572358.2 mRNA upstream 7544 50599955 ~ 50755992 (-) False thsd7aa
XM_021572364.2 mRNA upstream 405112 50997523 ~ 51012139 (-) False LOC110496448
XM_021572365.2 mRNA upstream 405112 50997523 ~ 51012139 (-) True LOC110496448
XM_021572367.2 mRNA upstream 453991 51046402 ~ 51049503 (-) True LOC110496450
XM_021572366.2 mRNA upstream 460356 51052767 ~ 51067584 (-) True LOC110496449
TU1783548 other downstream 105920 50436997 ~ 50437459 (-) True G1558916
TU1783393 other downstream 184349 50356269 ~ 50359030 (-) True LOC110496438
TU1783125 other downstream 509238 50023091 ~ 50034141 (-) True LOC110496434
TU1783089 other downstream 574771 49967896 ~ 49968608 (-) True G1558535
TU1780876 other downstream 2186532 48356613 ~ 48356847 (-) True G1556577
TU1783852 other upstream 30680 50623091 ~ 50623983 (-) True G1559205
TU1783839 other upstream 42992 50635403 ~ 50650253 (-) True thsd7aa
TU1785000 other upstream 620744 51213155 ~ 51214144 (-) True LOC110496463
TU1785112 other upstream 790261 51382672 ~ 51455285 (-) False G1560339
TU1786046 other upstream 1586909 52179320 ~ 52183207 (-) True trak1b

Expression Profile