RNA id: XM_021572358.2


Basic Information

Item Value
RNA id XM_021572358.2
length 8110
RNA type mRNA
GC content 0.52
exon number 28
gene id thsd7aa
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 50599944 ~ 50755992 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agggagagagagggcggtgCTGCATCAGCCCGGCACACGCAGGACGAAGCAATACCAACAGCCTCGGCTTAGAGGTCTATTGTTCCCTGTTTCCCCCTCGCTGGCCTAGTCaccacatagagagagaaagaggggaggagaggagaaccattCATTCGCCCAGGATTACTTCTTCTTAGAGGAGGGACGGAGCAGGGAGCACACTTCTCCTCCACTGTGTCTGAGCGCTCCTTCAGTGCGTCTCCGTGTGTGTTGCCTTCTCCactctttttccatttgtttttctTTCGTTGTGTGGATACTATCACCGTGGTCCCACTGCGAAGGCCATGGGGTTGCCCGGCGGAGTGAAGGGGACACTGGGTGTGTGGAGAGggtcactcccctctctctgggGGCTAGCGCTGGTCCTCTTCTGGATCTCTGGAGCCACGGAGGCACAAACTGCAGCAGACGCCAAACCAACTGTTTACGTCTGGCAAACAGGTCCATGGGGCCGGTGTATGGGCAGCGAGTGTGGCCCAGGGGGCAGCCAGAGCCGGGCAGTGTGGTGTGCCCACTCTGAAGGCTGGACTACCCTTCACACCAACTGTGACCAGGCCGAGCGCCCAGAGAACCAGCAGAGCTGCTTCCACGTTTGTGACTGGCACAAGGACCTGTATGACTGGCAGCTGGGTGCCTGGAATCAGTGCGTGCCCGTATCCATGCGTAGCACCGGGGTGATCCAGCGGCCAGCCGTGTGTCTCCACGGCGAGGAGGGCATCCAGACACGCGAGGTGGGCTGCGTCCAGAAAGCGGATGGCGTGCCAGCGGAGGATGTGGCGATTTGTGAATACTTTGAGCCCAAGCCCAGGCTGGAGCAGGCCTGTCTGATCCCGTGCCCACGGGACTGCGTGGTCTCCCAGTTCACCCCATGGACTTCCTGTTCAAAAATGTGTGGCACGGGTCTTCAGAATCGTGTCCGTTTTGTCCTGGCGCCGCCCATGTTCGGGGGTTCGGCCTGCCCTAACTTGACAGAGTTCCAGATTTGTCAGCCAGGTCCCTGTGTGGGCCCAGAGAGCCTGTATAGTCTAAGGGTGGGATCCTGGGGTCCCTGCTCTGTACCACTCCCTCGCACGGCCAGGCAGGCTCCAACTCTTAATCAAGGTAAAGATGTGGCTGTCCCTCGCCGGCTACGCAAAGGCAGAGAGGGTAAAGAGGGTAAAGAGGCCAAAGAGGGCAGCGAGGTGCCCACCCCACGCCAGCCTCGTCTGAGTAAAGAAGAAAGGATGAAAAGAAAGGAGGAACGAAAGGAGGGAAGAAAAGGCAGACAGGCAGCCAAAGAAGGGCGCAGGAAAAACAAGGAAACAGTCAAGGAGCGGGTGAGAGAGCGGGTGAGAGAGCGGGTGAGAGAGcgggtgagggggagggggagggtgaaAGACCCagagaccaaggagctgatcaaaaataagaggaacaggaacagACAGAACCGACAGGGAGGGAAGTTCTGGGACCTGCAGGTTGGATACCAGACCCGGGAGGTGACCTGTGTTCACAGGAGCGGCAACACTGATGCACTCAGCCTGTGTTCTCAGGAGTCCCTACCAGTGACCTACCAGGCCTGCGTCCTGACCAAGGACTGTGAGGTGAGCGACTGGACCGATTGGTCGCCCTGCTCCAAGGACTGCTATGAGCTCAACGGGCCCACGggcgaacacacacgcacacgccgGGTACACCTGCTCCCcgtgggaggaggggtggagtgcCCCGAACTGGAGGAGAAGGAACCATGTACCCCTCAGGGAGAAGGGGTACCCCCCTGCATCGTGTACAACTGGAAGACAACAGAATGGACTGAGTGCAGGGTGGACATGTTGCTAAGCCAACAGGACCGTCGTCGTGGTAACCTAACGGGGCTGTGTGGAGGCGGAGTCCAGAACCGTGAGGTGTACTGTGTCCAGGCAACCAGCGTCGACCCCGCTTCCAGCGCTCTCAAGAGCAAAGAAGCCTCCAGGCCCGTTGATGATGACCTGTGCCTCAGCCCGCCCCCCAACACCACCCAGCTGTGCCACATCCCCTGTCCTGTGGAGTGTGACCTGTCCTCCTGGAGTGCCTGGGGACCCTGCACCTTCGAGAACTGCCTGGACACAGCTGCCAAAAAAGGGTTCAaactgaggaagaggagagtcATCAATGAGCCGACAGGAGGAACAGGAAGCTGCCCTCACCTGGTGGAGTCCATACCATGTGACGAACCCAGTTGCTATGATTGGTTGCTTGTGAAGCTGGAGGAGTGTATCCCAGACAACGAGAGAGAGTGCGGACCGGGCACCCAGATACCACAAGTGCAGTGTGTCAACAGTGAtgGTGAGTATGTGGACCGCCAACTGTGCCGTGATGCCATCCTACCCATGCCTGTCATCTGTGAGGTGCCTTGCCCCAAGGACTGTGTCCTCAGTCCCTGGTCCTCCTGGTCCCTGTGCTCACACACCTGCTCCGGGAAGAACACAGAGGGAAGGCAGATGAGAGCCCGCTCAGTACTGGCCTACAGCGCTGGGGAAGGCGGGGTCCAGTGCCCCAACAGCATTGCTCTCCAGGAGGTGCGGAGCTGCAATGACCACCCTTGTACTGTGTACCACTGGCAGACAGGGCCCTGGGGACAGTGTATCGAGGACACGTCGGTCCCCCCTGCCAACTCCACAGCGGCCGGGGTCGGGGTCAGGGGAGGGGACTCCTCCTGCTCTGTGGGGATGCAGACGCGGAAGGTCATCTGTGTCCGGGTCAATGTAGGGCAGGTGCCTCCCAAAAAGTGTCCGGAGAGTATTCGTCCTGAGACGGTCAGGCCCTGCCTCCTGCCATGTAAAAGAGACTGCAGCGTCACCCCCTACAGCGACTGGAGTGCCTGCCCTGCCACATGTAAAGAAGGTGGCAACACGAAAAGGAAACAGAACAGGAAACGCATCATCATCCAGCTGCCAGCCAACGGGGGACAGGACTGCCCGGAGGTGTTGACtcaggagagagactgtgagtcGCCGTCTGTCTGTTTGGGATACAGGTGGAAAACACACAAGTGGAGGCGATGCCAGTTGGTTCCCTGGTCCGTTCGTCAGGACAGTCCTGGAGCTGTGGAGACCTGTGGGCCTGGACTGCAGGCTAGAGCTGTCTCATGCTGGAAGCAGGACGGGGGTCAAGCGGACATGGGagcatgtctgaagtttgccagcTCCATGCCCTCTCTAACCCAGCCCTGCCAGCTCCCATGCCAGGACGACTGCCAGCTAACCGCCTGGTCCAAGTTCTCTTCCTGTACACAGGACTGTGTGGGTGTCAAGACCCGCAAGAGGATGCTAGTGGgGAAGAGCAAAAAGCGAGACCAGTGTAAGAACAACCAGATGTACCCACTCAGTGAGATCCAGTACTGCCCCTGTAACAAGTACAACGCCCAGCCCGTGGGGAACTGGTCGGACTGCATCCTGCCTGAGGGTGGCCGTGTGGAGGGCCAGCCGGGCATGAAGATCCAGGGGGACATCAAGGAGTGTGGCCAGGGCTACCGCTACCAGGCCATGGTGTGTTACGACCAGGACAACAGACTGGTGGAGACGTCACGGTGCAACAGCCACGGATATATTGAGGAGGCTTGCATCATCCCCTGTCCGTCTGACTGTAAACTCAGTGAGTGGTCCAACTGGTCACGATGCAGCAAGTCTTGCGGCAGCGGGGTCAAAGTGCGTTCCAAGTGGCTGAGGGAGAAGCCTTACAACGGTGGTAGACCGTGCCCCAAACTCGACCACGTCAACCAGGCTCAGGTGTATGAGGTGGTGCCGTGTCTCAGTGACTGTGGTCAGTATGTGTGGGTGGCTGAACCCTGGAGTGTCTGGAAGGTCAGCAACGTGGACCTGAAGGAGAACTGTGGAGAAGGAGTGCAGACCAGAAAGGTCAGGTGTATGCAGAACACTATGGATGGGCCGTCGGACTCTGTGGAGGACTACCTGTGTGACCCAGAGGAGATGCCACTTGGGGCCAGAGATAGCCAGCTGCCCTGCCCTGAGGACTGTGTTCTGTCTGACTGGGGGGTCTGGAGCCGCTGCTCACTGCCATGCAACAAAATCAGCACGAGAGAGAGGACGGCATGCCTCATCCGTCAACCTGGAGAGGGGAAGCTGTGCCCCAACACCACGGAGACCGAGCCCTGCAGCCTCAACAGCAACTGCTATCACTACTCCTATAACATCACCGATTGGAGCACATGTCAGCTGAGTGAGAGAGCTGTGTGTGGTAGTGGCATAAAGACGCGCATGCTGGACTGTGTACGAAGTGACGGCAAGTCTGtcgacctcaagttctgtgaagAGCTGGGTCTGGATAGGAAGTGGCAGATGAACGCTTCCTGTGTGGTGGAGTGTCCCGTCAACTGCCAGCTATCTGATTGGTCACCTTGGTCCGAGTGCACACAAACCTGTGGACTAGCAGGGAAGCTGTGGCGCAGGAGAACGATGCTCCAGGTGCCCCAGGGTGATGGGCGAACCTGCCCCCGTCAGAGGGAACAGTGGAAGCCTTGCCCTGTCAGACCCTgttaccaatggagatacagccCCTGGTCAGAGTGCAAGTCTGAGGGTGCGAGGTGCGGAGAAGGGCTGCGGTTCCGTAACGTGTCTTGCTTCGTGTCGGACGGGTCTGGCCAGGAAGAGGGCAGCCTGGTGGATGATGAGATGTGTGGAAACCTGGAGCCCTCGGTAGAAGGAGACAAACGGGTCACCCTGGAAGAACCCTGCACCTCGCCCTGTCCAGgtGACTGCTACCTGACTGACTGGACAGTGTGGAGCCCGTGTCAGCTGAGCTGTGTCAGTGGAGATGACCTGGGTTTCGGCTCAGTGCAGGTCAGATCCAGAGCCGTGCTGGCCCAGGAGCCAGAGAACCTACTGCAGTGTCCAGAACAGGAGTGGGAAGCCCGGCCCTGCACTGAGGGCCAGTGTTATGAGTACAAGTGGATGACAGGAGCGTGGAGAAGCTCCTCTCGACTGGTCTGGTGTCAGAGATCTGATGGATTAAATGTCACAGGTGGCTGCCCTATGACGGCCCAACCCGTGGCAGACCGATCATGTGACCCAGCCTGCAACAAACCACGCTCCTTCTGCACAgaggcgGGTGTGTGTGGCTGTGAGGAGCGCTACACGGAGGTGATGACTTCAGACGGCCTGCTGGACCAGTGTACGGTGATCCCTGTGTTAGAGATCCCCACGGCAGGGGACAACAGGGCTGACGTGAAGACCATCAGGGCGGTCAGCCCCACACAGCCCTCCAACAGCCTGCCTGGCCGAGCTGGACGCACCTGGTTCCTACAGCCCTTCGGACCAGATGGTAAACTGAAGACATGGGTCTACGGTGTTGCAGCCGGAGCTTTTGTTCTCCTCATATTTATAGTCTCCATGACCTTCCTAGCCTGTAAAAAGCCAAAGAAACCCCAGAGAAGACAGATGTATAACAACCGGCTCAAGCCCCTGACCCTGGCCTATGACGGAGACGCTGACATGTGAACCTCCTCCTAATCTACTTGGTGACAGAATCATTTTACACTGACGTTATGGAGACTGTCATCGTGGGAACAGTCAGACAGGTTGTCAAGGAGACCCATCTTTGACCTTTCTCCTCAGGCTACCAGTGGGTGTGGCTTAAAACCTCtggagctctaggaagagttgggTTATGTCACGGatttatcaacaacaacaacaacaacaacaacaaagcaaaAAAGAAATCGAGTCATGTTCGTTCATTAGTAGCCTAGAATTTTCCTTcctgaatattttttatttattacattttttgtaTACTTTGTTTCACAAGAGCCTTCACAAACTCTATCTTCTTCTTCTTAAGGAAGTCTGCCTTTGCTTATCTGCCATTTACTACTTTTTCCTGTCAAATAAAAACATCTTTCAAGACGAAGGTTGTTGGAGAGGGCCCTGAAAAAACAGAGTCCTTCCTTCTTGGCTACAGCTGCTCTGTTGGAAATTAGATGAGAAGTACGCAATGCTTTTTAAAATTTATTCCTGGAGAAAATTGCTGCCTCTCTATTTTTCTTCTGGACTGGATCCTTTTCCCtagaaaacaaaacaaagtgAAAATGTCCTAATCTTACAGAAATACTGTCAACCTTTGTAGGAaatctctgcctgcctctccctttctcttccgtTTCAGGCTCAATATTGCACTATATTAGTGCAGCATGATATGTTCTTATGTCTGGGAAGCTGCCTCCCTCAATACAAGATGATGTACAGTCTTGTGCTAGAAATGTCAAAAAAAAGTAGACCTTTTTTCAAAAACAAATGTTGCTTCTTTAACCTCTTGTATGTGATATGATAATAGGGCGGACGATGCCATGTAAATAGAATTGATTTACCTTTGTAGTATAGTATGTACAGCTGCATTTTACCGACACGGGTTCAAATGGTTTCTGTTTTCAACTGCGCTTGATTGCgcttgcctggcacaatggaGCCATTGGAattgtcccaaaagtgcaaaccctacCCATCTGCCACTCCAGGCCAGGCTCAATTAAATGCAGAAAGTATTATAAAgaattcaaatactatttgaacccaggtctgaacaTGTCTCAttctctgcctgcctgaccttATGTTTGTCTCCTGTTGGTTTCTCTGACTTGCTTTGATGGCTTATTATAGTTAGTCATTGTTTTTCCATTTCCTTTAGTAACTTTATTCAACATCTCAAAGACCAGAATACCATCAAACGTGCACTGCAGGGAATCCCGATTCCACATGGCAGAAAAATCACATGGCTCTCGTACTGAGGAAAAAAAAGCTAATTCAAAGAACTGTTTCGGGTTTGTTGAGAGAAATACAGCAACAATTCTAGTTGATGATTTTATTGAAAGGGTTTATTTTCACAGAAAAAAAACGATGTGATTTCTATCCCCTTTGCGAGTTTAATAGAATCTGGTCTTTGTTGTTAAGACAGAAGGGTGTTACTGGGTTCACAAATTCTCCTTTACCTTCTGATCCACCAGAAGAGAGTGGCTTCTCTTTACATCTTGGTCTCATATCTACTGCTGTGTAACATCCTCAATCCTAACTAGAACAGCCTACTTGTAACCAAACTGCATAGGCGCATTGCTATATACATATCATACGAGCTCTCAATACTGCTCCTATTCAGTGTGGCTGTTGCTTTGGTCGAGGGATGAGTGTGACTACAATGTCTACAATAATCACTCACACACATTTATGCTTCAGTCTTTCTCCCTGCCTCGGTGCTATTCTATAATGTGTTCTGTATTGCAAAAGCTAGATAGAACGCAACCTAGGTAGCCACAATAACACTCCAAGTAATTCAAAGGAACAGATGCAGCAAGGCCTTAGATGTCGTTCAAAACCTTTTCATGCTAATGCTGCAATGACATATCTGAAGAGTCAGAGTCCTCTGCCTGAAAACAGGTTATATGCATAATATTGGCTATGGCAGACTGGCAGTTGATAGTGCAGACTACTTATTCAATGTTGTAGATGGACAAACCTCATGTAAAGTAAATGAATCAGTCACAGCCATACTATTCTCCAGGGGATTGAATTGCGGTGGTAGATACAGACGGACATTTGTTTGTTGACAGGTGGTCAAAGGAATTTTTACTTTTTTTCAATTAACTTTCTAAAATTATGATTTGTAAAAAATGGGTGcattatgtttttatttaataatTATTTATGCATTATATATAAATATGTTCCTTTTTTACTGCGCAaagtaaagtttaaaaaaaatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgtgcgtcTGTGTGCACGTGTTTAattattcttgtggggaccagaaatcCCCActagaatagtaaacaaacaaaaatttgaccaacaagggacattttgttagtcccagTGAGGTCAAATGCTGTTtttagggggtttagggttaagtttagaattagtgttagggttagaattacattaagggttaggagctattGTTTGTTTTacagttaggagctagggttaaggtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1783837 lncRNA downstream 4334 50595408 ~ 50595621 (-) True G1559190
TU1783806 lncRNA downstream 67857 50531852 ~ 50532098 (-) True G1559159
TU1783799 lncRNA downstream 76057 50523655 ~ 50523898 (-) True G1559152
TU1783795 lncRNA downstream 82211 50517541 ~ 50517744 (-) True G1559148
TU1783760 lncRNA downstream 114806 50463966 ~ 50485149 (-) True G1559116
TU1783933 lncRNA upstream 5084 50761076 ~ 50761344 (-) True G1559286
TU1783940 lncRNA upstream 15422 50771414 ~ 50771851 (-) True G1559293
TU1783945 lncRNA upstream 19799 50775791 ~ 50776006 (-) True G1559298
TU1784758 lncRNA upstream 64558 50820550 ~ 50831810 (-) True G1560047
TU1784759 lncRNA upstream 67060 50823052 ~ 50827733 (-) True G1560048
XM_036953027.1 mRNA downstream 7544 50543379 ~ 50592411 (-) True LOC110496443
XM_021572346.2 mRNA downstream 240823 50256022 ~ 50359132 (-) False LOC110496438
XM_021572364.2 mRNA upstream 241531 50997523 ~ 51012139 (-) False LOC110496448
XM_021572365.2 mRNA upstream 241531 50997523 ~ 51012139 (-) True LOC110496448
XM_021572367.2 mRNA upstream 290410 51046402 ~ 51049503 (-) True LOC110496450
XM_021572366.2 mRNA upstream 296775 51052767 ~ 51067584 (-) True LOC110496449
XM_021572371.2 mRNA upstream 338100 51094092 ~ 51096890 (-) False agr2
TU1783548 other downstream 162496 50436997 ~ 50437459 (-) True G1558916
TU1783393 other downstream 240925 50356269 ~ 50359030 (-) True LOC110496438
TU1783125 other downstream 565814 50023091 ~ 50034141 (-) True LOC110496434
TU1783089 other downstream 631347 49967896 ~ 49968608 (-) True G1558535
TU1780876 other downstream 2243108 48356613 ~ 48356847 (-) True G1556577
TU1785000 other upstream 457163 51213155 ~ 51214144 (-) True LOC110496463
TU1785112 other upstream 626680 51382672 ~ 51455285 (-) False G1560339
TU1786046 other upstream 1423328 52179320 ~ 52183207 (-) True trak1b
TU1786055 other upstream 1493362 52249354 ~ 52250489 (-) True G1561167
TU1786137 other upstream 1600760 52356752 ~ 52357310 (-) False LOC110496491

Expression Profile