RNA id: TU1783838


Basic Information

Item Value
RNA id TU1783838
length 2552
lncRNA type sense_over
GC content 0.41
exon number 3
gene id thsd7aa
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 50599944 ~ 50755992 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATCCCTGTGTTAGAGATCCCCACGGCAGGGGACAACAGGGCTGACGTGAAGACCATCAGGGCGGTCAGCCCCACACAGCCCTCCAACAGCCTGCCTGGCCGAGCTGGACGCACCTGGTTCCTACAGCCCTTCGGACCAGATGGTAAACTGAAGACATGGGTCTACGGTGTTGCAGCCGGAGCTTTTGTTCTCCTCATATTTATAGTCTCCATGACCTTCCTAGCCTGTAAAAAGCCAAAGAAACCCCAGAGAAGACAGATGTATAACAACCGGCTCAAGCCCCTGACCCTGGCCTATGACGGAGACGCTGACATGTGAACCTCCTCCTAATCTACTTGGTGACAGAATCATTTTACACTGACGTTATGGAGACTGTCATCGTGGGAACAGTCAGACAGGTTGTCAAGGAGACCCATCTTTGACCTTTCTCCTCAGGCTACCAGTGGGTGTGGCTTAAAACCTCtggagctctaggaagagttgggTTATGTCACGGatttatcaacaacaacaacaacaacaacaacaaagcaaaAAAGAAATCGAGTCATGTTCGTTCATTAGTAGCCTAGAATTTTCCTTcctgaatattttttatttattacattttttgtaTACTTTGTTTCACAAGAGCCTTCACAAACTCTATCTTCTTCTTCTTAAGGAAGTCTGCCTTTGCTTATCTGCCATTTACTACTTTTTCCTGTCAAATAAAAACATCTTTCAAGACGAAGGTTGTTGGAGAGGGCCCTGAAAAAACAGAGTCCTTCCTTCTTGGCTACAGCTGCTCTGTTGGAAATTAGATGAGAAGTACGCAATGCTTTTTAAAATTTATTCCTGGAGAAAATTGCTGCCTCTCTATTTTTCTTCTGGACTGGATCCTTTTCCCtagaaaacaaaacaaagtgAAAATGTCCTAATCTTACAGAAATACTGTCAACCTTTGTAGGAaatctctgcctgcctctccctttctcttccgtTTCAGGCTCAATATTGCACTATATTAGTGCAGCATGATATGTTCTTATGTCTGGGAAGCTGCCTCCCTCAATACAAGATGATGTACAGTCTTGTGCTAGAAATGTCAAAAAAAAGTAGACCTTTTTTCAAAAACAAATGTTGCTTCTTTAACCTCTTGTATGTGATATGATAATAGGGCGGACGATGCCATGTAAATAGAATTGATTTACCTTTGTAGTATAGTATGTACAGCTGCATTTTACCGACACGGGTTCAAATGGTTTCTGTTTTCAACTGCGCTTGATTGCgcttgcctggcacaatggaGCCATTGGAattgtcccaaaagtgcaaaccctacCCATCTGCCACTCCAGGCCAGGCTCAATTAAATGCAGAAAGTATTATAAAgaattcaaatactatttgaacccaggtctgaacaTGTCTCAttctctgcctgcctgaccttATGTTTGTCTCCTGTTGGTTTCTCTGACTTGCTTTGATGGCTTATTATAGTTAGTCATTGTTTTTCCATTTCCTTTAGTAACTTTATTCAACATCTCAAAGACCAGAATACCATCAAACGTGCACTGCAGGGAATCCCGATTCCACATGGCAGAAAAATCACATGGCTCTCGTACTGAGGAAAAAAAAGCTAATTCAAAGAACTGTTTCGGGTTTGTTGAGAGAAATACAGCAACAATTCTAGTTGATGATTTTATTGAAAGGGTTTATTTTCACAGAAAAAAAACGATGTGATTTCTATCCCCTTTGCGAGTTTAATAGAATCTGGTCTTTGTTGTTAAGACAGAAGGGTGTTACTGGGTTCACAAATTCTCCTTTACCTTCTGATCCACCAGAAGAGAGTGGCTTCTCTTTACATCTTGGTCTCATATCTACTGCTGTGTAACATCCTCAATCCTAACTAGAACAGCCTACTTGTAACCAAACTGCATAGGCGCATTGCTATATACATATCATACGAGCTCTCAATACTGCTCCTATTCAGTGTGGCTGTTGCTTTGGTCGAGGGATGAGTGTGACTACAATGTCTACAATAATCACTCACACACATTTATGCTTCAGTCTTTCTCCCTGCCTCGGTGCTATTCTATAATGTGTTCTGTATTGCAAAAGCTAGATAGAACGCAACCTAGGTAGCCACAATAACACTCCAAGTAATTCAAAGGAACAGATGCAGCAAGGCCTTAGATGTCGTTCAAAACCTTTTCATGCTAATGCTGCAATGACATATCTGAAGAGTCAGAGTCCTCTGCCTGAAAACAGGTTATATGCATAATATTGGCTATGGCAGACTGGCAGTTGATAGTGCAGACTACTTATTCAATGTTGTAGATGGACAAACCTCATGTAAAGTAAATGAATCAGTCACAGCCATACTATTCTCCAGGGGATTGAATTGCGGTGGTAGATACAGACGGACATTTGTTTGTTGACAGGTGGTCAAAGGAATTTTTACTTTTTTTCAATTAACTTTCTAAAATTATGATTTGTAAAAAATGGGTGcattatgtttttatttaataatTATTTATGCATTATATATAAATATGTTCCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1783840 lncRNA downstream 97 50599944 ~ 50600208 (-) False thsd7aa
TU1783837 lncRNA downstream 4684 50595408 ~ 50595621 (-) True G1559190
TU1783806 lncRNA downstream 68207 50531852 ~ 50532098 (-) True G1559159
TU1783799 lncRNA downstream 76407 50523655 ~ 50523898 (-) True G1559152
TU1783795 lncRNA downstream 82561 50517541 ~ 50517744 (-) True G1559148
TU1783842 lncRNA upstream 262 50609857 ~ 50610085 (-) True G1559195
TU1783843 lncRNA upstream 989 50610584 ~ 50610810 (-) True G1559196
TU1783859 lncRNA upstream 21856 50631451 ~ 50631668 (-) True G1559212
TU1783874 lncRNA upstream 45662 50655257 ~ 50655478 (-) True G1559227
TU1783876 lncRNA upstream 48775 50658370 ~ 50658606 (-) True G1559229
XM_036953027.1 mRNA downstream 7894 50543379 ~ 50592411 (-) True LOC110496443
XM_036953021.1 mRNA downstream 241173 50256022 ~ 50359132 (-) False LOC110496438
XM_021572364.2 mRNA upstream 387928 50997523 ~ 51012139 (-) False LOC110496448
XM_021572365.2 mRNA upstream 387928 50997523 ~ 51012139 (-) True LOC110496448
XM_021572367.2 mRNA upstream 436807 51046402 ~ 51049503 (-) True LOC110496450
XM_021572366.2 mRNA upstream 443172 51052767 ~ 51067584 (-) True LOC110496449
XM_021572371.2 mRNA upstream 484497 51094092 ~ 51096890 (-) False agr2
TU1783548 other downstream 162846 50436997 ~ 50437459 (-) True G1558916
TU1783393 other downstream 241275 50356269 ~ 50359030 (-) True LOC110496438
TU1783125 other downstream 566164 50023091 ~ 50034141 (-) True LOC110496434
TU1783089 other downstream 631697 49967896 ~ 49968608 (-) True G1558535
TU1780876 other downstream 2243458 48356613 ~ 48356847 (-) True G1556577
TU1783852 other upstream 13496 50623091 ~ 50623983 (-) True G1559205
TU1783839 other upstream 25808 50635403 ~ 50650253 (-) True thsd7aa
TU1785000 other upstream 603560 51213155 ~ 51214144 (-) True LOC110496463
TU1785112 other upstream 773077 51382672 ~ 51455285 (-) False G1560339
TU1786046 other upstream 1569725 52179320 ~ 52183207 (-) True trak1b

Expression Profile