RNA id: XM_021572364.2


Basic Information

Item Value
RNA id XM_021572364.2
length 2134
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC110496448
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 50997523 ~ 51012139 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccaacttccCTGGAACCACCTTCTCCCTGGAACCACTCTGGCCTCAGccgtctctcttctcctccgtctctcctctcctccgtctctcctctccgtctACCATCTCAGCATAGTCAGTGTTTACCAGCGCTGCGCCTGGCAACAAGCTGCATGCTCAGGATTACAGGAGGCCTTACCTTTCAACACTGTGAGCTCTGCCTTCCTGCTTCGATCTCTCTCCTTGGGAACTAACGCGGGGCACACGGAGGTGCGAGGTGAGAGAGCCGTGGAGGAGAGCCCTGATTTGAGGCGCCGTGTCCGCACACCTCCCTCAACTGGCTTCagtcctctctactctctctctgtcttgtggTCTCGATTAGTGTCTGGTTGTTCCTGGAGGTtttggtggttgtgtgtgtggtggactTAGGGGAGTTCGTCTCACGGGTGGATCTCGTGGAGCACCGTGATGGATCACTCCCTGTTTGGGTGCCTCCGGAGCCCCCACGCCCCGGCCCAGGGCCTGCACCCCCACCCTGCCTTTACCCAGTCCCCGCTGGTGCTGCACGGACGCTCCGACCACATCTCCTACTCCAACCTGCCCGACTCCTCGTCCCCCTGTGGGGGGTACCCTGGACCTGGGGGGGAGGAGGCGTACGGAGGGCAGCAACACCACCATCGTGGAGGACACCTCCATCAGCATCAGCAGCATCCCCACCACTCACAGCACCAGGCCCACCAGACCCCCTGGCATGTCCCCCAGATTCCCTCACCCAACACCAGGCATGGCCTCTGCCTGCCTCCTCCGGACAGGCAAGTCTCAGAACTGTGTGGTGGAGGGACCGTGAATCTGTGTGGATTCCAGACTAACCCCGGTCTAGGAGGTAGTAGTGACCCTACAGGTGTGTCGTGTGTTCCTGGGGACGTTGGACGACAGACGATGTCCCCGGACGAGACGGAACAGAGACGGAACAGTAAAGGAAAAGATGACTTGCACAGCTCAGaTTCCCAGGACGGGAGCTATAAGTCTGACGTGAACAGCAAGCCCAGGAAGGAGAGGACAGCGTTCACCAAGGAACAGATCCGGGAACTGGAGTCAGAGTTTGCGCACCACAACTACCTGACGAGACTTAGGCGATATGAGATAGCAGTCAACCTCGACCTCACAGAAAGACAAgtgaaGGTGTGGTTCCAGAACAGAAGGATGAAGTGGAAGCGTGTTAAAGGAGGTCAACAGGGGGCAGCAGCCCGGGAAAAAGAACTTGTCAACGCGAAGAAGGGAACGCTGTTGCCGTCAGAGTACTGTGGCATGGTGGGAGGATTACACCACTCCTCCAGTTCCCCTGGTAATGAGGACAGTCACGACAGCGACCAGAGCTCAGAGCACGCTCAGTTATGACCCTGACCCGCCACATAGGCCACGCAGTGGTCAAAGGTAAATTTTGTAGCCATTTGGACAAACGTCTAAAATTGCAGTGAGTTGATGTGATCATGTTGCATTTGTAGGTACAGAATTACATACATAGGCCTACATACTCACTATGCTCTCATGAGTAGAAAGAAGACATGGGCTTATACTCTCTCAAGAAACAGCAGCGGGTGTTCTGACTAAAGGTGTTTGTTGACTGGCTAAGGAGTGGAGGAAGAAAGATAAAGTAAAGGTAAGCAAGAAGAGGAAGGAATGGAACGAGGATGGAATGATCAACTGGATGTGTaagatcaaataaaaaaatatatgcttGTGAGCAAAGCCTCAAGCTCCTGAGACTGTAAATTGGGAATATAACAGGATATTATTGTGAACATTCCACAAGTGCCTTGCATTGATAAAATGGCTTGGATTTTTGCACTGTCAAATACTAAATTCTACTGTATTTTCTCGGTTTGGAATACGACAATCATGCAATGAGCTTTAAGTAAAAATgtggaattgaattgaatagtaGGCTATTACCGTGAGTCCTATTATTCTGCTTTACTCACAACATAACTGAATGATGCATATTCATCTCCCGACTGTTGATCCATTGGTTTTACATTGTTCTCCCACTAAGTCTTAAAAGTTTACCTTtgagtgaaatatatatatatatatatcattttattACATATAAATCTGGGACATAATGGTTTCTTAAGTGAATAAAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1784840 lncRNA downstream 43816 50946532 ~ 50953707 (-) True G1560118
TU1784803 lncRNA downstream 45078 50945216 ~ 50952445 (-) True G1560085
TU1784796 lncRNA downstream 114469 50882804 ~ 50883054 (-) True G1560082
TU1784785 lncRNA downstream 114791 50870293 ~ 50882732 (-) True G1560073
TU1784775 lncRNA downstream 130883 50865256 ~ 50866640 (-) True G1560064
TU1784890 lncRNA upstream 9358 51021497 ~ 51021912 (-) True G1560165
TU1784937 lncRNA upstream 71775 51083914 ~ 51084398 (-) True G1560205
TU1784943 lncRNA upstream 73748 51085887 ~ 51086600 (-) True G1560208
TU1784950 lncRNA upstream 79062 51091201 ~ 51100402 (-) True G1560214
TU1784925 lncRNA upstream 89752 51101891 ~ 51104465 (-) False LOC110496457
XM_021572358.2 mRNA downstream 241531 50599955 ~ 50755992 (-) False thsd7aa
XM_036953027.1 mRNA downstream 405112 50543379 ~ 50592411 (-) True LOC110496443
XM_036953021.1 mRNA downstream 638391 50256022 ~ 50359132 (-) False LOC110496438
XM_021572367.2 mRNA upstream 34263 51046402 ~ 51049503 (-) True LOC110496450
XM_021572366.2 mRNA upstream 40628 51052767 ~ 51067584 (-) True LOC110496449
XM_021572371.2 mRNA upstream 81953 51094092 ~ 51096890 (-) False agr2
XM_021572372.2 mRNA upstream 81953 51094092 ~ 51096890 (-) True agr2
XM_021572377.2 mRNA upstream 89740 51101879 ~ 51114958 (-) False LOC110496457
TU1783839 other downstream 347270 50635403 ~ 50650253 (-) True thsd7aa
TU1783852 other downstream 373540 50623091 ~ 50623983 (-) True G1559205
TU1783548 other downstream 560064 50436997 ~ 50437459 (-) True G1558916
TU1783393 other downstream 638493 50356269 ~ 50359030 (-) True LOC110496438
TU1783125 other downstream 963382 50023091 ~ 50034141 (-) True LOC110496434
TU1785000 other upstream 201016 51213155 ~ 51214144 (-) True LOC110496463
TU1785112 other upstream 370533 51382672 ~ 51455285 (-) False G1560339
TU1786046 other upstream 1167181 52179320 ~ 52183207 (-) True trak1b
TU1786055 other upstream 1237215 52249354 ~ 52250489 (-) True G1561167
TU1786137 other upstream 1344613 52356752 ~ 52357310 (-) False LOC110496491

Expression Profile