RNA id: XM_021572372.2


Basic Information

Item Value
RNA id XM_021572372.2
length 933
RNA type mRNA
GC content 0.49
exon number 8
gene id agr2
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 51094092 ~ 51096890 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggttgGTGGGAGGGGTCAGCATGAGAGCTTAGGGCCCGTGTATAAGAGCAGgtccaggtgagagagaagggacacAGCAGAACGAGGAGCTGCAGAACACAGGAGACACACAAAGGTGCCACAGAGAACAGGTAGTAATCATGATCCGAGGTCTGCTGTCGGTGCTGTTGGTCCTGGTGGCCATAGCCGTGTCTTCATCTCTGGCTAAGCCTGAGAAGAACATCGCCAAGAGGGGGAAGAGGATCCCTCAGACTCTCTCCAGAGGCTGGGGTGATCAACTAATCTGGGCTCAGACCTATGAGGAGGCTCTGTACTGGGCCAGGGCACAGAACAAGCCTCTGATGGTCATCTTCCACCTGGAGGACTGTCCTCACAGTGCATCCATGAAGAAGGTCTTCGCTGAAGACAAGGACATCCAGAAGGTGGCTGATGAAGACCTCATCGTCCTCAATCTGGTGTATGAAACCACAGACAAGCACCTTTCCCCTGATGGCCAGTATGTCCCTAGAATCATCTTTGTCGATCCCTCTATGACAGTGAGAGCTGACATCACAGGGCGCTACTCCAACCGTATGTACGCCTATGAGCCTTCTGACATCAAACTCTTACTGAGCAACATGCAGAAGGCCAAGAAGCTGCTGAAGACTGAGTTGTAAGCACTGACTCATCATGTAACCAACCTCATGACCTTTGGCCTGCGACTTCAGAGGTTCTCCGAACATTGTCTGAACGTTCTCTGGAGCCTAGGAGTCAGCCAGTGGCATACTGTCACCATGTAAACCTAAGCACTGGAAAGAACTAGTCTTCACTTTCACAAAACGCAAttccatttttttaaattctgttATTTTTCCTGAACTTCTCTGTCTTTGTAATGTATTGCTGTACATCTGAGATGTCTTTTTATTAAATATAGTGCAATTATGAAATGA

Function

GO:

id name namespace
GO:0060575 intestinal epithelial cell differentiation biological_process

KEGG:

id description
K20356 AGR2; anterior gradient protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1784943 lncRNA downstream 7492 51085887 ~ 51086600 (-) True G1560208
TU1784937 lncRNA downstream 9694 51083914 ~ 51084398 (-) True G1560205
TU1784890 lncRNA downstream 72180 51021497 ~ 51021912 (-) True G1560165
TU1784840 lncRNA downstream 140385 50946532 ~ 50953707 (-) True G1560118
TU1784803 lncRNA downstream 141647 50945216 ~ 50952445 (-) True G1560085
TU1784925 lncRNA upstream 5001 51101891 ~ 51104465 (-) False LOC110496457
TU1784928 lncRNA upstream 15864 51112754 ~ 51114864 (-) True LOC110496457
TU1784958 lncRNA upstream 35862 51132752 ~ 51138114 (-) True G1560222
TU1784995 lncRNA upstream 109958 51206848 ~ 51207067 (-) True G1560249
TU1784997 lncRNA upstream 111116 51208006 ~ 51208214 (-) True G1560251
XM_021572366.2 mRNA downstream 26508 51052767 ~ 51067584 (-) True LOC110496449
XM_021572367.2 mRNA downstream 44589 51046402 ~ 51049503 (-) True LOC110496450
XM_021572364.2 mRNA downstream 81953 50997523 ~ 51012139 (-) False LOC110496448
XM_021572365.2 mRNA downstream 81953 50997523 ~ 51012139 (-) True LOC110496448
XM_021572358.2 mRNA downstream 338100 50599955 ~ 50755992 (-) False thsd7aa
XM_021572377.2 mRNA upstream 4989 51101879 ~ 51114958 (-) False LOC110496457
XM_036953042.1 mRNA upstream 4989 51101879 ~ 51114958 (-) False LOC110496457
XM_036953043.1 mRNA upstream 4989 51101879 ~ 51114958 (-) False LOC110496457
XM_036953044.1 mRNA upstream 4989 51101879 ~ 51114958 (-) False LOC110496457
XM_036953045.1 mRNA upstream 4989 51101879 ~ 51114958 (-) False LOC110496457
TU1783839 other downstream 443839 50635403 ~ 50650253 (-) True thsd7aa
TU1783852 other downstream 470109 50623091 ~ 50623983 (-) True G1559205
TU1783548 other downstream 656633 50436997 ~ 50437459 (-) True G1558916
TU1783393 other downstream 735062 50356269 ~ 50359030 (-) True LOC110496438
TU1783125 other downstream 1059951 50023091 ~ 50034141 (-) True LOC110496434
TU1785000 other upstream 116265 51213155 ~ 51214144 (-) True LOC110496463
TU1785112 other upstream 285782 51382672 ~ 51455285 (-) False G1560339
TU1786046 other upstream 1082430 52179320 ~ 52183207 (-) True trak1b
TU1786055 other upstream 1152464 52249354 ~ 52250489 (-) True G1561167
TU1786137 other upstream 1259862 52356752 ~ 52357310 (-) False LOC110496491

Expression Profile