RNA id: XM_036953040.1


Basic Information

Item Value
RNA id XM_036953040.1
length 3404
RNA type mRNA
GC content 0.49
exon number 24
gene id LOC110496456
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 51117661 ~ 51149891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGCTTTACTCGTTATTCACACGTCAAAGGGCGACTGAAACTCAGTGGTGCTGTCGCTACGTCAACGAATGGAAAAATCTCAAACCGCATGTGTTGTGATAAAACACTTGCTCTTCTCTGACAGCCACTCTTACCACCGGGTTCAAGTTATTTTTTTAAGATAAAGTCGTTGGTTTTCTGTTAATATCCGTATAAATAAATAGCAGAAAATGCCCAAGAAAGCGAAAGAAGACGCAGAatgggaaggagaagagggagcagTAGCACCATCAGCGGTGGCAGAAAAATCAGTAAAGAAAGGAAAGAAGGATAAAAAGGGGAAGAAGAGTTTCTTTGATGAGCTGGCCACAGATAATAAAACTGAGAAGGAGGATGAAATTGTGCTGAAAGAGATGCAAGGAAAGCAGAAAAAGAAAGACCGGCGGAAAGGTAGAAGTGGTGAGGGAGATGATGATGACGAGGATATGATGGAGAAACTAAAGAAGCTATCAGTGCAAGCCAgcgaggatgaggaagaggaagTTGTGGCCCCTGGAAAAGGCAAGGGAAATAAGGGTGGGAACATCTTTGCCGCTCTCAGTCAGGGAGACAGTGATGATGACGGTGGTGATGATGAGAGACTGATGAATAAGGAGGTTGAGAAGGTGCATAAGGGCAAGAAAAAAGATAAGCCAAAACCGAAAGCCAAGGCTCCCTCCGATGATGAGGAAGAAAAGAAAGACGGGGATGAAAAGACAGCTGTGAAAAAGAACATGAAGCCAGAGGCTAAACCAGCACCCAAGGCAACTGAGGAGGATGAAGCGGAGGACGAGAAGCCTCAGCCAAAGAAAGGCAAGAAGGAACAGCCCAAGAGGATGAACAAACCTGCTCGCCCTCCGCGCAGCGAAGATGAAGAGGCTGAAGACGACGAAGATGACACAATGAAGTGTGCTGAAGACGTGATAGcagagcaggagcaggagaaaGGTGACGACCCCTTTGCCAACATGagcaagaaggagaagaagaagaaaaagaaaatgATTGAGTATGAGAAGCAGGTAGCCAGTGTGCGTGCTGCCAACGCCATTGAGGGAGACTTCTCCGTGTCCCAGGCTGAGTTGTCTTCCAGGCAGGCCATGCTGGAGAACGCATCAGATATCAAGCTGGAGAGGTTCAGTATATCAGCTCACGGGAAAGAGCTGTTTGTCAATGCAGATCTCCTGGTGGTGGCAGGAAGACGCTACGGTCTGGTTGGACCTAACGGGAAGGGGAAGACCACGCTTCTGAAACATATCGCCAACAGAGTTCTCAGTATCCCTCCTAACATTGATGTGCTGCTCTGTGAGCAAGAGGTGATGGCGGATGACACCCCAGCGGTCCAGGCTGTGTTGAAGGCAGACACCAGGCGTCTGAAGCtcctagaggaggagagacagttgCAGGCTCTCCTGGAGAAAGGAGAAGACAGCGTGGCTGAGAGACTGGACAAGGTCTATGAGGAGTTGAGGATCATCGGGGCAGCAGCAGCGGAGGCTAAAGCCCGTCGTATCTTGGCTGGTCTGTCCTTCACCCCAGAGATGCAGAACAGAGCTACTAAGAAGTTCTCTGGAGGCTGGAGGATGAGAGTCTCACTAGCCAGAGCTCTGTTCATGGAGCCCACACTGCTGATGCTGGATGAGCCCACCAACCATCTTGACCTCAACGCTGTCATCTGGCTCAACAACTACCTTCAGGGCTGGAAGAAGACTCTCCTCATCGTGTCTCACGACCAGAGTTTCCTGGACGATGTGTGTACTGACATAGTTCACCTGGACAACCAGAAACTTTACTACTACAGAGGGAACTACTtgACATTTAAGAAGATGTATGTTCAGAAGCAGAAGGAGCTTCAGAAACAGTACGACAAACAGGAGAAGAAGCTCAAAGATCTCAAGGCTGGAGGGAAGTCCACCAAACAGGCCgAGAAGCAGACTAAGGAAGCCTTGACCAGGAAGCAAGCAAAGGGAAAGAaaaagggaggagtggaggaggagagtcaGGAAGCTACGGAGTTGCTCAAACGACCCAAAGAGTACACTGTCAAATTCACCTTCCccaaccccccttctctctctcctcccatcctcggATTGCACAGTGTAGACTTTGCCTTTGAGGGACACAAACCCCTCTTCAAGAATGTGGACTTTGGTATCGACATGGAGACTAGAATTTGTATAGTTGGACCCAATGGAGTCGGGAAGAGTACCCTACTACTACTTCTCACGGGCAGGTTAAATCCATCTAAGGGGGAGATGAGAAAGAACCATCGGCTGAAGGTGGGCTTCTTCAACCAGCAGTATGCTGACCAGCTGAACATGGAGGAGGCAGCTACAGAGTACCTCCAGAGGAACTTCAACCTGCCCTACCAGGACAGCAGGAAGTGTCTGGGCCGCTTCGGACTGGAGAGCCACGCACACACCATCCAGATCTCCAAACTATCAGGTGGTCAGAAAGCCAGAGTGGTGTTCGCTGAGCTGGCCTGTCGGCAACCTGACGTTCTCATCCTGGATGAGCCTACTAACAACCTGGACATTGAGTCGATCGATGCCTTATCAGAAGCTATCAACGAGTACAAAGGAGCGGTGATCATTGTGAGTCACGATGCCCGGCTCATCACTGAGACAGCCTGTCAGCTGTGGGTGGTGGAGGACCGGTCCGTCAACCAGATAGACGGAGACTTTGAGGACTACAAACGGGAGGTCCTGGAATCACTGGGGGAGACCCTGGTCCACAAGGTCAAGGAGTGACCTACCTACAGCAGaaccagggctctattccctaatatagtgcattacttttgaccagagcactatgggccctggtcagatggtactgcactatgtagggaatagggtgccattttgaacaGACCCCAGGAGGAAATAGAAATGTAATATAACCCACTGCTGATGCTGGCTATGTAATTAGCTCAGTGCTGGGGTGCATCTTCATAGTCTAAAGTGGCTTCCTTTCCTTGATCATTTGAAAACTTAGGATATGTTTAGGCAACATCATGGCTGAAGTCAAGGAAGCCGCGTTGGATTATTAAGACACACCCCTTGGTGTACTGCAGTATCCTCTCGGCCTATGAGATACATTTTCAGAACTACAAATTGCCCCCTTGCCCCACACCTGTAGATCTGATAGGATCCAGAAATGTCTTGGGCAAGGGGGTGATTTGGAATTCAGAATTTGACTGAACAAATAGGCATGTCTCACCCATGTAACAATGGGACAGGAAGAAAGCAATATGCTGAAGTACTTGCAATAGATTACCACTGGCTCCATACATGTAGAGCTCTTAACTTGGAATAAACATACCTGTATTAAGTATTTCCTACAGACAAAAAGGCAATGAAATAAATGATTTTGCATCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1784928 lncRNA downstream 2797 51112754 ~ 51114864 (-) True LOC110496457
TU1784925 lncRNA downstream 13196 51101891 ~ 51104465 (-) False LOC110496457
TU1784950 lncRNA downstream 17259 51091201 ~ 51100402 (-) True G1560214
TU1784943 lncRNA downstream 31061 51085887 ~ 51086600 (-) True G1560208
TU1784937 lncRNA downstream 33263 51083914 ~ 51084398 (-) True G1560205
TU1784995 lncRNA upstream 56957 51206848 ~ 51207067 (-) True G1560249
TU1784997 lncRNA upstream 58115 51208006 ~ 51208214 (-) True G1560251
TU1784999 lncRNA upstream 61405 51211296 ~ 51211705 (-) True G1560253
TU1785032 lncRNA upstream 134341 51284232 ~ 51284547 (-) True G1560286
TU1785049 lncRNA upstream 153738 51303629 ~ 51303836 (-) True G1560299
XM_021572377.2 mRNA downstream 2703 51101879 ~ 51114958 (-) False LOC110496457
XM_036953036.1 mRNA upstream 5523 51155414 ~ 51167757 (-) False LOC110496455
XM_036953035.1 mRNA upstream 5523 51155414 ~ 51167766 (-) False LOC110496455
XM_036953033.1 mRNA upstream 5523 51155414 ~ 51168138 (-) False LOC110496455
XM_036953034.1 mRNA upstream 5523 51155414 ~ 51168138 (-) False LOC110496455
XM_036953037.1 mRNA upstream 5523 51155414 ~ 51168138 (-) True LOC110496455
TU1783839 other downstream 467408 50635403 ~ 50650253 (-) True thsd7aa
TU1783852 other downstream 493678 50623091 ~ 50623983 (-) True G1559205
TU1783548 other downstream 680202 50436997 ~ 50437459 (-) True G1558916
TU1783393 other downstream 758631 50356269 ~ 50359030 (-) True LOC110496438
TU1783125 other downstream 1083520 50023091 ~ 50034141 (-) True LOC110496434
TU1785000 other upstream 63264 51213155 ~ 51214144 (-) True LOC110496463
TU1785112 other upstream 232781 51382672 ~ 51455285 (-) False G1560339
TU1786046 other upstream 1029429 52179320 ~ 52183207 (-) True trak1b
TU1786055 other upstream 1099463 52249354 ~ 52250489 (-) True G1561167
TU1786137 other upstream 1206861 52356752 ~ 52357310 (-) False LOC110496491

Expression Profile