RNA id: XM_036953037.1


Basic Information

Item Value
RNA id XM_036953037.1
length 4306
RNA type mRNA
GC content 0.55
exon number 24
gene id LOC110496455
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 51155414 ~ 51168138 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACCAATCAATGGAATATGAACTAAATATTTGAATAGACAAAGTAGATAATTGCTCATGTAACGCCATTTCAATTTCATCAACAGTGTATTTCCGTGCTATGACGTTGAACGAAGACAAAATCAATTATAATTGAGATTAACGGTTGAATCACATCCGGACGTAATTggcagtcccatagggcggcgcttaattggcccagcgtcgtccgggataggccgtcattgtaattaagaatttgttcttatctgattcgcctagttaaataaaacataaacGTCAGCTGGCTTCCTGATTTAAATACATGTAGATTAGGTAGCTGGCTAGCAAGCTAATAACAGCCTCGATTCAAGTGAGAATACAGcagagaaacatggaggagtcAGCAAGCACCATAGAGGTTACAGTGAAGACCCTGGACTCGCGGAGCAGGAGCTACACTGTCCGGAGAGAGTTGACATTGAAGAGGTTCAAAGAACACATATCTGCGTCAGTGGATATCCCAGTGGAAAAGCAGAGACTAATCTACCAGGGCAGAGTGCTGCAGGATGAGAGGACACTGAATGACTACAATGTAGCTGATAAGGTGATCCACCTAGTGGAGCGTGCTCCTCCTCAGACCTCCCAATCTGCTGGCGGGCGAGGAAGAGTGTCATcaggaggaacagagggaggtgccacctcctcctcccagggAGGCCCCCAGGACCGCAACGGGAACAGCTACGTCATGCTGGGAACCTTCAACCTGCCCGTCAACATCATGGACCCCCAGCAGATACAGATGCAAGTGCAGCAGATGATGGCAGGAGTGGGAGAAGCAGGAAGGAATACCAGAGTCAGCACCAGCACTGGACGCAATGgctcaatagatatgcatatcaacgTTGACCAATCAGTGCAGAGCGAGCCCAGGATGAGGCTGCAATTGGCTGAGAACTTGCTAAGAGAAACCCAATCTCTGCTCCACAGACTGGAGGGTCAGCCCAGTGACGTGCCATCTCGAGTCGAGCCGGAGACATCTCAGTCCACCTCTTCAGCTTCCTCTACAGCTGCCACTAAAGGAGCAGCACAGCCTATGGACACCTCCCCTCTTGCTCCACCACCTCCCCCTGCCACCTCCTCCACCCAGACAGAGGGACCACCCCACTCCGGGCCCAAcCCAGCGGAGCTGGTGGAGGTTTTGTCAGaggtgaggagggtggaggagaggctgGGTCCCTTCATAGAGAGAACTAACTCCATCCTGGGAGCTGCCACTTCAGCGGACTACATCAACAACacccaggagagagaggaggacctGCACGTTCTCAACCTGGTTGGGGAGGCTCTCCGTCTCCTTGGCAACACCCTGGTTGCCCTTAGCGACCTGCGTTGTAACCTGGCCACTCCTCCCCCCCGTCACCTCCACGTGGTTCGACCCATGTCCCACTACGGCTCCCCCGTCctgctgcagggtggtatgcccCACCACGTCCCGAGAAACCTGGGGACCACAGTGACTATGACATCCAATGGGAGGCAGGCAGCTGAGGGCCTAGCCCAACCTTCTCAGGCCCCTGGCCCACCAGAGAGCCAGGCCCTCCCTCCACAGCCCAACTCAGCCAATCAGCAGCCAGATTCTGGCAGCAGCCCTCAGGTCCAAGGACAGATCCCTATTGGTACTGGACAGCCTGGTGCTACTCCGGTCCACATCCCAGACCTTCCTCCAGAGTTCATGCAGGCCATCGTCCACCAGATCTCTCAGCAGACCGGGCAACCAGGACCAGGTGTCCCCGGGACCACCTCCAGCTCTGAACCCTCTGCCCCTCACAGCCTTCTGCCCCCTGGGGCCAGGGTGGTGGttacacacccctcctcctccccccacatCCCCCAGCCTGTGGTCACCAACATAAACCTCGGGGCTTCGGTACCCTCTACTGGCGGACAACACAACCTACAGGGCACACCTCTGGCTCACTCTCCCGTAAGTCAGATGATCAGTGGTCTGGTTGGACAGCTCCTGATGCCTGGACAACAGATGCCTGGGCACCAGGTTCTTCCAGGTGACCAGACATCCACCAGTTCCTCTTTATCCACCTCCTCCAACCCAGTCCCTCCCCTGCCCTCTGGGGAGACCACCTCTGGCCAGACCACCACCTCTGTGGGCCAGCCATCGGCGGGGGTTGCCGAGGCCAACCTAGCCCAGTTCCTGGGCTCCCTTCTGGGTGGCGCAGGCGGGCCAGGAGCCCCTGGTGCTGGAGCTAACCCACAAATCACTGTGACCGTACCTGGAGTCCCAGGGTTCTTCCATGGCATGTCAGAATTCACCCAGGCTAACCAACCCGTGTTCTCCCGACCCACAACCTCACCCGGCCAGGAGCCTCCCCCTGGCCAAGGCACCCCTGCCCCCCCTCAGGTGGCCCCTGGGGGTGTAGGGGACCCCTCCCTGAGCCCGGAGCTGTTTACAGGTATTGTCCAGGGGGTCCTCTCCACCATGATGGGGGCTCCGCAGGGGAACGGGGAGAGCATTGCTCAGTTCATCCATAGACTGTCTCAGaccaccaacctcttcacacctGGATCTGGGGACGCAGTCGGGTTCTTCGGGGACCTGTTGTCTCTGGTGGGTCACAGTTTCTCCATGGTGGACATGGTGTTGTTACTCCACGGTAATGCCCAGCCAATCAGCCGGATCCAGCCCCAGCTCACTGACTTCTTCAACCAGCACTACCTGCAGGGTCCAGAGCCTACTGATGCCAATATCAACGCAGCATCTGAGGACCTCATCAATGGCCTGGAGGAGTACATAACAGAGAGCTTTgccacagtgacagtgagagagggagtggacaTCATTCAAACCAACATCGCTTTCCTTAGACAGCAGTTCACCTGCATGGCCACGCATATCCTACGCTGCACAGACCACATGTTTGGCCACCGCCTGCTGCTGCTCTGCACCCAGGGTCTGTTTGAGTGTCTGGCTCTCAACCTTTACTGTCTCCGAGGGGAACAGGGAGCTCTCACCCAAGTCCTCAATCACCACATCAGGAGGATGTCAGCAGAGGTCAACCCCAGCCTGGTCAACTGgctgactagtataatgaccatgAGACTCCACGTCATCCTGGAGCATAACCCAGTCACTGAGGACCACATCCAGCACTATGTCATCCACACATGGAGAGCAGGGCCTGAGGCACAGGctggacagcagacagacacacagaacatGGAGATGGCTGCAGGTCTGTCTCCGGCCCCAGCCACCACAGCAGGGGAGGCCATGGTTTCATCAGGGGACAGACAGGAAGTTGGAGCGTCCCCCGAGGTGACCACCCCCTCGCGGAGAGCATCATCGGGGGAGATCGGAAGAGCCGTTGCCATGGCggcaggaggaagggaggagtcTGTAGGAGACGTGGAGCCCTGGGCAGCTGCAGTGCCCCCTGAGTGGGTTCCTATCATCAGACATGACATGCTGTCTCAGAGGAAGATAACTCAGCCCCCTCTGTCTGACGCATACCACCATGGGATGCCTGCCAAGAGGAGGAAGACTCACCAGGGTGAGGGCCCTCAACTGTCCCTGTCTGTGGCAGTGAGTCGGGCTGCCCGGGCTACAGGAGCCATACCTGTCACTAGCCCAGATAGCCTCCAGGGGGAGCTAGAGGAGCCAGAGCTGCAGGATGCCTACCAAGAACAGGTGATGAGTGACatcaaagagagagtgaggggtgaCCAAGACTTCAGCTCCCAGTGTTTCCCCAACACACACCGGGCCTTCTCGCTAGATGACTCTTAAATCTTATTGGTCCTCAGGCTTGTCAACAACTCCATCTAgccaatcttttttttttttttcccctggATGACTTCTAATCTGTTATCACACCTGTCAATAACCACACCTAGCCAATCACTCACAACCATGTGGTGTATCCAGGGGTGTGTTCATGTCAGCTTGATTCGGGACATTTCTATCTTCAACATGTAACGTGCCCCAGACTCCATTCTGCAACATTCCAATGAAGGACAAAGAGCTAAGAAAACAGACATGACTTGCTAAGACCCTGCTTTCTCATTGGGCTGCCACGGAAAATGCCACTCACTGAAAACCGAGAAGAGCTTTAGCACACAGATGACAGACAGGTTGTATCTTCTCCATTTCAACAAACTCATTCCTAACTGGTTGTCATCTGTATGTCCAGTTGTCCTTATGAGGCTTTAACGTGTAAATGAGCACAAATTGTACATTGTATTAAGAATGTGATAATGCAACAGCTATTTCTTGTTAAGTTAATAAAGTAGTGGAACCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1784958 lncRNA downstream 17300 51132752 ~ 51138114 (-) True G1560222
TU1784928 lncRNA downstream 40550 51112754 ~ 51114864 (-) True LOC110496457
TU1784925 lncRNA downstream 50949 51101891 ~ 51104465 (-) False LOC110496457
TU1784950 lncRNA downstream 55012 51091201 ~ 51100402 (-) True G1560214
TU1784943 lncRNA downstream 68814 51085887 ~ 51086600 (-) True G1560208
TU1784995 lncRNA upstream 38710 51206848 ~ 51207067 (-) True G1560249
TU1784997 lncRNA upstream 39868 51208006 ~ 51208214 (-) True G1560251
TU1784999 lncRNA upstream 43158 51211296 ~ 51211705 (-) True G1560253
TU1785032 lncRNA upstream 116094 51284232 ~ 51284547 (-) True G1560286
TU1785049 lncRNA upstream 135491 51303629 ~ 51303836 (-) True G1560299
XM_036953039.1 mRNA downstream 5523 51117661 ~ 51149891 (-) False LOC110496456
XM_036953040.1 mRNA downstream 5523 51117661 ~ 51149891 (-) False LOC110496456
XM_036953041.1 mRNA downstream 5523 51117661 ~ 51149891 (-) True LOC110496456
XM_036953044.1 mRNA downstream 40456 51101879 ~ 51114958 (-) False LOC110496457
XM_021572388.2 mRNA upstream 628 51168766 ~ 51205232 (-) True LOC110496461
XM_021572390.2 mRNA upstream 45013 51213151 ~ 51214129 (-) False LOC110496463
XR_002469558.2 mRNA upstream 45013 51213151 ~ 51214398 (-) False LOC110496463
XM_021572391.2 mRNA upstream 62340 51230478 ~ 51234928 (-) True LOC110496464
XM_021572393.2 mRNA upstream 258602 51426740 ~ 51429376 (-) True LOC110496466
TU1783839 other downstream 505161 50635403 ~ 50650253 (-) True thsd7aa
TU1783852 other downstream 531431 50623091 ~ 50623983 (-) True G1559205
TU1783548 other downstream 717955 50436997 ~ 50437459 (-) True G1558916
TU1783393 other downstream 796384 50356269 ~ 50359030 (-) True LOC110496438
TU1783125 other downstream 1121273 50023091 ~ 50034141 (-) True LOC110496434
TU1785000 other upstream 45017 51213155 ~ 51214144 (-) True LOC110496463
TU1785112 other upstream 214534 51382672 ~ 51455285 (-) False G1560339
TU1786046 other upstream 1011182 52179320 ~ 52183207 (-) True trak1b
TU1786055 other upstream 1081216 52249354 ~ 52250489 (-) True G1561167
TU1786137 other upstream 1188614 52356752 ~ 52357310 (-) False LOC110496491

Expression Profile