RNA id: XR_002469558.2



Basic Information


Item Value
RNA id XR_002469558.2
length 842
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC110496463
representative False

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 51213151 ~ 51214398 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAAGAATAGGGAGATTCTCCGCCCTCCAAATACGTCCGCCTGGTCCAAGTGCCGGGAATCCCATTATATTATTCACGAATCGTTTGCAACCAACAGTAACATCATTATCATATTAAGGATTGGATTATTGTAAAGATGTGGTAGTTGATCAATTCAGCAACGCGTTACTGTTGAAATTAAAGCGAGAAAGTATGTGAAGAACCAACACAGAAACTGCTAACGTTCGTGTGACCGTTCTCAAAGTCACTTACGTCACAGCCAGGAAGAAGCGATAGCTCTGCTAGAGAAGTCCTTCGGAAGTGTTGTTTTGATTATACGGTGCATTTCAGGGGTTTATTCCCCTATCTAATCCGTTCTTGTAGATGAAAGacaggtGTTGGTGACACCATGGCACCACTCCTGTTATACCGCATCGTCAGCTCCCTAACCTGCCATCTAACCCAGATCACCCTCAGCCGGATCTACCCTAGCACTGCCACCACCATCTCCCGCTGCCTCTCCTCCCTTACATCCTACCCAGCCAGAGTACTCCTGACCCCGGGTAGACCCATCCAGCCCCTGGCCTCTTCTCCTCGATCTTCTCCCCAGGATGGTGGCTCCCTCCTAGGCCAGTGTCAGCACCTGGCCTGCCTCCAGCCCACTTCAGGGATGAAAACCAAGAGCGCTCTGAAACGGCGCTGTAAAGATTGCTTCTTTGTGGTACGGCGGGGTCGTCTATTTGTGTTCTGTAAGGCTCACCCCAGACACAAGCAGCGACAGGGGTGATGAGGAGCAGGGGGTGTATGGTCCTCGAAATTGTTTGTTACTTGAATTGCCACATTAAAGTTTTTGACTGATTGACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1784999 lncRNA downstream 1446 51211296 ~ 51211705 (-) True G1560253
TU1784997 lncRNA downstream 4937 51208006 ~ 51208214 (-) True G1560251
TU1784995 lncRNA downstream 6084 51206848 ~ 51207067 (-) True G1560249
TU1784958 lncRNA downstream 75037 51132752 ~ 51138114 (-) True G1560222
TU1784928 lncRNA downstream 98287 51112754 ~ 51114864 (-) True LOC110496457
TU1785032 lncRNA upstream 69834 51284232 ~ 51284547 (-) True G1560286
TU1785049 lncRNA upstream 89231 51303629 ~ 51303836 (-) True G1560299
TU1785050 lncRNA upstream 91740 51306138 ~ 51306338 (-) True G1560300
TU1785102 lncRNA upstream 167333 51381731 ~ 51455285 (-) False G1560339
TU1785107 lncRNA upstream 230008 51444406 ~ 51455285 (-) True G1560339
XM_021572388.2 mRNA downstream 7919 51168766 ~ 51205232 (-) True LOC110496461
XM_036953033.1 mRNA downstream 45013 51155414 ~ 51168138 (-) False LOC110496455
XM_036953034.1 mRNA downstream 45013 51155414 ~ 51168138 (-) False LOC110496455
XM_036953037.1 mRNA downstream 45013 51155414 ~ 51168138 (-) True LOC110496455
XM_036953035.1 mRNA downstream 45385 51155414 ~ 51167766 (-) False LOC110496455
XM_021572391.2 mRNA upstream 16080 51230478 ~ 51234928 (-) True LOC110496464
XM_021572393.2 mRNA upstream 212342 51426740 ~ 51429376 (-) True LOC110496466
XM_021572397.2 mRNA upstream 272214 51486612 ~ 51494390 (-) False LOC110496470
XM_036953048.1 mRNA upstream 272214 51486612 ~ 51503794 (-) True LOC110496470
XM_036953075.1 mRNA upstream 964922 52179320 ~ 52219848 (-) False trak1b
TU1783839 other downstream 562898 50635403 ~ 50650253 (-) True thsd7aa
TU1783852 other downstream 589168 50623091 ~ 50623983 (-) True G1559205
TU1783548 other downstream 775692 50436997 ~ 50437459 (-) True G1558916
TU1783393 other downstream 854121 50356269 ~ 50359030 (-) True LOC110496438
TU1783125 other downstream 1179010 50023091 ~ 50034141 (-) True LOC110496434
TU1785112 other upstream 168274 51382672 ~ 51455285 (-) False G1560339
TU1786046 other upstream 964922 52179320 ~ 52183207 (-) True trak1b
TU1786055 other upstream 1034956 52249354 ~ 52250489 (-) True G1561167
TU1786137 other upstream 1142354 52356752 ~ 52357310 (-) False LOC110496491
TU1786175 other upstream 1430591 52644989 ~ 52647777 (-) True G1561279

Expression Profile