RNA id: TU1786046


Basic Information

Item Value
RNA id TU1786046
length 1634
RNA type TUCP
GC content 0.41
exon number 5
gene id trak1b
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52179320 ~ 52240648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCGCCTCACCCtcaaccccctctccctcccctcacctAAGCAACACTGATCCTGCAGCGGTGTACTACCCAGGTAAATGCATGGCCCATACCAGCTCTACCTACACCTTTACTACCTGTCGTATCCTACACCCAACTGATGAGCTGACCCGAGTCACACCCAGtGTTAACCCCGGCATGTCCTCGTCATCCTGTGTGATGACATCATCTATCCTGGCCACTCCCGCTGCCACGCCCTGTCATACACCCCGCAGGATGAGTCTACTACGACCCTCTGAGTCCTCTACCAacctcagGGAAGCCACACGTACCACCAGTACCTCTCTGGGATTAGTGCGCCTTCTGCAGGAGAGAGGTATCTCTGCAGCCATGTACCACCACCAGACCCAGGGCTGGGACAGGGCTGgtagggataaagtgactaggaaaCGAAATAACAAAtaatagcagcagtgtatgtgacgAGTCAAAAGAGTTCATgcaaaagggtcaatgcagatagtctgggcagctattggttaactatttaactacctATTcaccagtcttatggcttgggggtagaatctgttcaggATCCTGTTGGTTTCAGACTTGGTGTATTGCTACCCCTTACCATGCGctagcagagacaacagtctatgacttgggtagctggagtctttgacaatttgctGAGAAAGTTAGATCAAACTTACACGTCATGTGATTGTCATGTCAGCTGGACTTGGAGCTTCTTCCTGACCATGTATTTAGATTACTAGTATCATGTAGCACCACTAACTATAGTCTAAACCTTTCTTCCTAGGTAATAATGGATTGGGAGGTAATGTTGAATATGTACCAATTCTAATGGTAAAGGTTTTCCACCAAATTCATGAAATAGATGATCAACTTTTTTGCtcaactctttctctttctttctttttctcttccactctctctttctctctccctgttctcaaTGAGACGAATAAGTCATAGTTCACTTTTAAGAGTCTTGTTAATGTTTTGTCTGTGTGTTAAAGTTTCATTAGTGTTATTTTTCTAAATGACTATAGACAAAGGGAAATGGATAGTGGTTTCAGAGTGGTCAGTGAGTGAGGGAATTATGAAAAGATCAATATACCCACTGCTGGAATGGAGACAGGGAAGGAGGAAccggaggaagggatagaggttAAACAGTCTTTGTGGTCAGAAGCGTTTCCTGCTTCTTACTTCAGAGAACTCCACAGAGAATTTCAATTgcttaaattaataaaaaaagcATTAGTGCCTCAATATGGTTTCTACATCACTATGCTCATACTGGTTGTTTATGTTCTTATTCTAACAAAAAAGTTGTCCACTGAGTTACACTCGTTAGCTCTTACATTGATATGTATAATTATGTAATTTATTGACTTTCGATTGAATATGCAAAACTATTATTATTCACAAGATTTAACACATAAAACACATGCGGTATATAACACTATATTCATTCATTGTTATTAGTACTGGAAAACTCATTTACAACAATCACGGTGAaatagagtggtggtgttcaatactaaacaaaaatataaacgcaacatgtaaagtgttggtttcatgagctgaaataaaatataccaGAAATTGTCCacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1786033 lncRNA downstream 7271 52171704 ~ 52172049 (-) True G1561155
TU1786032 lncRNA downstream 9211 52169838 ~ 52170109 (-) True G1561154
TU1786008 lncRNA downstream 10034 52126649 ~ 52169286 (-) True G1561130
TU1785463 lncRNA downstream 200927 51977466 ~ 51978393 (-) True G1560658
TU1785532 lncRNA downstream 202596 51974939 ~ 51976724 (-) False G1560706
TU1786089 lncRNA upstream 58071 52241278 ~ 52241515 (-) True G1561201
TU1786092 lncRNA upstream 64821 52248028 ~ 52248469 (-) False G1561204
TU1786094 lncRNA upstream 64821 52248028 ~ 52248852 (-) False G1561204
TU1786093 lncRNA upstream 65041 52248248 ~ 52248852 (-) False G1561204
TU1786095 lncRNA upstream 65041 52248248 ~ 52248469 (-) True G1561204
XM_036953048.1 mRNA downstream 675526 51486612 ~ 51503794 (-) True LOC110496470
XM_021572397.2 mRNA downstream 684930 51486612 ~ 51494390 (-) False LOC110496470
XM_021572393.2 mRNA downstream 749944 51426740 ~ 51429376 (-) True LOC110496466
XM_021572391.2 mRNA downstream 944392 51230478 ~ 51234928 (-) True LOC110496464
XR_002469558.2 mRNA downstream 964922 51213151 ~ 51214398 (-) False LOC110496463
XM_036953076.1 mRNA upstream 69240 52252447 ~ 52259084 (-) False zgc:110239
XM_021572417.2 mRNA upstream 69240 52252447 ~ 52259991 (-) True zgc:110239
XM_036953082.1 mRNA upstream 78160 52261367 ~ 52267803 (-) False sytl1
XM_036953081.1 mRNA upstream 78160 52261367 ~ 52268634 (-) False sytl1
XM_036953078.1 mRNA upstream 78160 52261367 ~ 52269291 (-) False sytl1
TU1785112 other downstream 724035 51382672 ~ 51455285 (-) False G1560339
TU1785000 other downstream 965176 51213155 ~ 51214144 (-) True LOC110496463
TU1783839 other downstream 1529067 50635403 ~ 50650253 (-) True thsd7aa
TU1783852 other downstream 1555337 50623091 ~ 50623983 (-) True G1559205
TU1783548 other downstream 1741861 50436997 ~ 50437459 (-) True G1558916
TU1786055 other upstream 66147 52249354 ~ 52250489 (-) True G1561167
TU1786137 other upstream 173545 52356752 ~ 52357310 (-) False LOC110496491
TU1786175 other upstream 461782 52644989 ~ 52647777 (-) True G1561279
TU1788031 other upstream 1415443 53598650 ~ 53602694 (-) True G1562762
TU1787983 other upstream 1438693 53621900 ~ 53628422 (-) False tomm7

Expression Profile