RNA id: XM_021572417.2


Basic Information

Item Value
RNA id XM_021572417.2
length 1871
RNA type mRNA
GC content 0.52
exon number 11
gene id zgc:110239
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52252447 ~ 52259991 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTTAAATTCAATAAATGTTGTATCACTCAAGTCGTTGCAGAACGCAATACGATATGTTTATGTCTTTCTGACTGATCTCATATACGCGCAGAACAACCTACGAAAAATAAGCTATGAGGGACTGGTACATTGTAACTGTGCTATTGTGGAGCGTAGTAGCCACAGAGGGAAAAGCTCTCCCTTCAGTCCCAGACTTTGGGAAGGCATACCATGTCAAAGGTGTGATCTCCCTGCCCTATGCTGAGATAAAGGAACCATTCGAGGCCTGGTTCGACCTGAAGGGGAGGACCAGCCGTATTGACTATTACCacgGCCAGGTGTCGACGTACCAGATGGGGATGGAGCTTCCTTGGGGATCATCCTATAAGATCACTCCTGAGACCACAGAGGTGGAGCTAAACATTATGAAGTGTTTCCAGGTCAATGGCACAAAAGAAGAGCCAGTCGCACCTCAAGGATCCCTACCTGACCTCCAGGGGTTCatgTTCCTCAGGATGGAGTACTATGGAGGTGTGCTCTGTGAGGTCTGGCAGAATGTGACAGTAGTCGGACACAAGAAGAATACCTACACACTCTGGGTGACACGCCCTGAAGGAGGGGTTATGGGAGGAGCTGAGCTGACCACTCCCCTACACTACGAGATGATGGGCTACAACACCCTGCTGGGGTCCCATTATGATAAATATCTGGTCGACTACAAGGAGTTCAGCTCAAAGTTTGACCCCAAAGTCTTTGCCCTGCCTGATGGGATGAGCTGTGGTTCATTTCCTGGTCCGGGTGTGGAGCACCACCTGCTGGCCAATCCGATGAAAGATCTGATTCACACTTCCTCGTTAGGCCATGCCCAGCGGTTGTTCGGCCACTTCAAGGAGCAGTTTGGGCGTCATTATGGTGacgagagagagcatgagaagaGAGAGCACGCATTCGTTCACAACCTCCGGTATGTCCACTCTATGAACCGTGCTGGCCTGTCGTTCTCCCTGGCGGTCAACTCTCTGTCTGACCTCTCCATGTCGGAGCTGTCTGCTATGAGGGGCAGAAATGGAGGGAAGAGGCCCAACAACGGCTTGCCGTTCCCCATGCACCTATACACTGGAGTACAGGTCCCTGATCAGCTGGACTGGAGGCTCTATGGTGCTGTGACTCCGGTGAAGGACCAGGCCATCTGTGGTTCATGTTGGAGCTTTGCCACCACTGGAGCAGTAGAGGGCGCTCTCTTCCTGAAATCAGGGTCCCTCCAGGTCTTGTCCCAGCAGATGTTGGTAGATTGTAGCTGGGGCTTTGGTAATAACGgatgtgatggaggagaggagtggagggccTACGAGTGGATCATGAAACACGGAGGCATCGCCACTACGGAGACCTATGGTTCCTACATGGgcatgAACGGCCTGTGCCACCTCAACACTTCTCAGCTGACAGCTCGTGTCCAGAGCTACACCAATGTGACGTCAGGTGATGCCGAGGCGCTGAAGGTGGCGTTGTTTAAACATGGCCCAGTGGCCGTCAGTATTGACGCAGGACATAGATCCTTTGTCTTCTACAGCCACGGGGTCTACTATGAACCCAAATGTGGAAACACAACTGACTCCCTGGACCACGCGGTGCTTGCAGTGGGTTATGGTGTCATGGAGGCGGAGCCTTACTGGCTGGTGAAGAACTCCTGGTCAACCTACTGGGGAAACGATGGGTACATACTGATGTCTATGAAGGATAACAACTGTGGTGTTACCACTGATGCTACGTATGTTACACTGGCATAGAGCGAGGGAGAAACATGAAACACACGCACAGGAGTTACCACTCCTTTTTAAATGATAGGAGGCGGTATTTGATATTGGATTAATATCAGAAGTGTGTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1786096 lncRNA downstream 629 52251476 ~ 52251818 (-) True G1561205
TU1786094 lncRNA downstream 3595 52248028 ~ 52248852 (-) False G1561204
TU1786093 lncRNA downstream 3595 52248248 ~ 52248852 (-) False G1561204
TU1786092 lncRNA downstream 3978 52248028 ~ 52248469 (-) False G1561204
TU1786054 lncRNA upstream 458 52260449 ~ 52260702 (-) True G1561166
TU1786052 lncRNA upstream 787 52260778 ~ 52261179 (-) True G1561164
TU1786104 lncRNA upstream 25845 52285836 ~ 52286989 (-) True G1561213
TU1786110 lncRNA upstream 34568 52294559 ~ 52295157 (-) True G1561219
TU1786111 lncRNA upstream 35719 52295710 ~ 52297156 (-) True G1561220
XM_036953075.1 mRNA downstream 32599 52179320 ~ 52219848 (-) False trak1b
XM_036953048.1 mRNA downstream 748653 51486612 ~ 51503794 (-) True LOC110496470
XM_021572397.2 mRNA downstream 758057 51486612 ~ 51494390 (-) False LOC110496470
XM_021572393.2 mRNA downstream 823071 51426740 ~ 51429376 (-) True LOC110496466
XM_021572391.2 mRNA downstream 1017519 51230478 ~ 51234928 (-) True LOC110496464
XM_036953082.1 mRNA upstream 1376 52261367 ~ 52267803 (-) False sytl1
XM_036953081.1 mRNA upstream 1376 52261367 ~ 52268634 (-) False sytl1
XM_036953078.1 mRNA upstream 1376 52261367 ~ 52269291 (-) False sytl1
XM_036953079.1 mRNA upstream 1376 52261367 ~ 52269316 (-) False sytl1
XM_036953077.1 mRNA upstream 1376 52261367 ~ 52269318 (-) False sytl1
TU1786055 other downstream 1958 52249354 ~ 52250489 (-) True G1561167
TU1786046 other downstream 69240 52179320 ~ 52183207 (-) True trak1b
TU1785112 other downstream 797162 51382672 ~ 51455285 (-) False G1560339
TU1785000 other downstream 1038303 51213155 ~ 51214144 (-) True LOC110496463
TU1783839 other downstream 1602194 50635403 ~ 50650253 (-) True thsd7aa
TU1786137 other upstream 96761 52356752 ~ 52357310 (-) False LOC110496491
TU1786175 other upstream 384998 52644989 ~ 52647777 (-) True G1561279
TU1788031 other upstream 1338659 53598650 ~ 53602694 (-) True G1562762
TU1787983 other upstream 1361909 53621900 ~ 53628422 (-) False tomm7
TU1788090 other upstream 1492415 53752406 ~ 53752683 (-) True G1562816

Expression Profile