RNA id: XM_021572420.2


Basic Information

Item Value
RNA id XM_021572420.2
length 2700
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110496488
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52317137 ~ 52331561 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGGAATGTCGAAGCCTTGTCCAATCAGAAGTTGAACAAATCTGGGACTACTCTGTGTTATCCCAAGTCTCCCCACCCTGGTTACAGTAAACCGTCATTTTTGTTTCTACTGAAAGACTCAACCAAGCAACAAGACTGATTTGGCTGACGggaAGCCCCCCGCTATCCCTCCCGTCCCAGAATGCCATTGGTGACGAGGAACATCGAGCCTCGCTATGTGTGCCGCCAGACGATCCCCAACACCATCCGCAGCGAGCTGGAGTGTGTCACCAACATTAGCCTTGCCAACATCATACGCCAGCTAGGCAGCCTCAgtaagtatgCAGAGGACGTGTTTGGAGAGCTGTTTGTGCAGGCGGGGGTGTTTGCTGTCCGGGTGAACacactgggagagagagtggacCGTCTACAGGTCAAAGTCACCCAGCTCGACCCTAAAGAGGAGGAGGtctctctGCAGGCCATCACCCAGAAGAAAGCGTTTCATAGTAATCTGACTCAGGACCAGCAGTTATTCTGTAGACCCTCTCTACCGCTGCCTGTACAGGAGACCTATCTGACCTGCAACCCACCTCCACCACTCAACAACCTCAGCcagtacagGGATGATGGTAAGGATGCTCTGAAGTTCTACACAGATCCCTCCTACTTCTTTGATCTGTGGAAGGAGAAGATGCTGCAGGACACGAAGGACATCATGAAGGAGAGACGCAAACACAGGaaggagaagaaggacaatCAGAATATGCGGACTCTGAATCCCAGGAAGATCAAAACCAGGAAGGATGAGTGGGAACGGCTAAAGATGGGAGAGGAGTTTGTGGTGCCCAAGAATGACATGggAGAATCTCTTGAGGGTCTGAATGGCAGTATTGGTTCAGGAGAAGGCTGTTACTCCCCTGATGGTTTGGACCAGAGTACTGGGTCGTACGCCTTCGATCCtggctcccccctccctccccccgccCCGGACGACTTCCTGCCCCCTCCACCCCCAGACATGGCGTATCATGACGGACAGTACGGAGCATCAACCCAAAAGCGCACCAGCGTTCTTAGCCCCACACACCCCCCTCCAGCCCCTCCCATGCCCTCTACTGCTCCCATTGGCACACGGCCCAACCTAGCCCCTCCTCctgcaccacctcctcctcccccctcccctggcTTCGgaatccctccccctcccccctctggaTTTGACTCTTCCCCTCCcactcccccctcttcctccgccTATCCCTCCCCCCCTGCCCCACCTCCTCCTTCCTATCAGGCCTCCATCTCTCcgcctcctcccccctctctcccccagggtGGTGgcgcacctcctcctcctcctcccccgccTCCCCCAGGCCCCCCTCCTCCCACTTCTggccctcctcccccctccttctccattGAGGCTCCCCCTCCTCTTAAATCCACCCAAGCTCAGCCAGAAGCCCCCGCTGACGCTCACAGTGACCTCCTGTCGGCTATCCGGCAAGGTTTTAACCTACGTAAGGTGGAGGAACAGAAAGAGCAGGAGAAAAAGGATAACTACGGCAACGATGTGGCGGCCATCTTGTCTCGCCGTATTGCTGTGGAGTGCAGCGACAGCGAGGACGACTCCTCAGAGTTGGGAGATGACGATTGGTCCGAATGAGACCTTCATCACCTCCACCCTCATGGTCTTCCTCGGTCCTCGTCAGAGAGAATGCATCATATCCTTATCCCATTACTTCTTTATAATCTATGATTTAAGGAGTAGAGGTCCAAAgataagtgtgtgtctgtgtgtgtgtcactactACACTCTTCCTCAGTATTCCCCACTCCTGTCTAAGCCAATCACATTCCCTGTATGTTGTATGTAGAACTGAACTGAGAAGCCAATGATTTAATTATGAGAACAGTCCAAATATCAAAAAGCCAATTATTAATATAAGGGGCACAGGGCCAAAGGTAATGATAATTATACCCTCATAGGCTACACACAGATAtcaacaaacatacagtataccGTACAGATATTGATTCTTACATGCATACACAGACAGTACAATTATGGTATGATTGATGAACTGTATTAATATTTTACTTTAAGATAATTATAAGATGTGTTAAATAATACCAAGAGCACAAAGAAAGGTTTTTATTgctgttttctttcttttttacctgtctttttctctctgtggTTGGCATGGTTACCTGGGCGACAGAGTGTCTCATtcacagatggggggggggggggggggggggggtctgaatcGTATCTAAAATGTCTGTACTGTTCTGAGTCAGCCCTAGCTGAAAACTGAAACCATGCTGCCCCCTATCAGTCAAAACATTATCTGACCAATCGGCGATCCCTCTCTTTCCCTAGTCCCGCCCCTCCATAAGTGCCTTTGCTTTCATGTTTATGTGTGAGGAGGATAAAGTTAACcttagacactgatctaaggtcagttttctGTTTCTTTCCCATCATAACCATAGGATTGGAGGAAAggtacctgatcctagatctgtgcctaagagACAACTTGATCCTCTTCTGTTTAAGTGCCTTCTGTTTGTTTTAAAGCCAAAGTGTAATGCCACAATCAGACCTGAGCATGTTAATATCCAACCACCTGTTTCTGCTTGTCCTGTCTTTCTCAACTTTATCAGTGACGATTATTACAATAATAAAGATACAATGAACTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1786124 lncRNA downstream 6604 52310308 ~ 52310533 (-) True G1561233
TU1786121 lncRNA downstream 9472 52307422 ~ 52307665 (-) True G1561230
TU1786116 lncRNA downstream 12286 52304345 ~ 52304851 (-) True G1561225
TU1786115 lncRNA downstream 13549 52303258 ~ 52303588 (-) True G1561224
TU1786112 lncRNA downstream 17104 52299662 ~ 52300033 (-) True G1561221
TU1786130 lncRNA upstream 16320 52347881 ~ 52350303 (-) True G1561239
TU1786134 lncRNA upstream 21167 52352728 ~ 52355011 (-) False LOC110496491
TU1786136 lncRNA upstream 23781 52355342 ~ 52355831 (-) False LOC110496491
TU1786139 lncRNA upstream 25933 52357494 ~ 52357912 (-) False LOC110496491
TU1786138 lncRNA upstream 28739 52360300 ~ 52396595 (-) True LOC110496491
XR_005037333.1 mRNA downstream 35262 52271271 ~ 52281875 (-) True LOC110519830
XM_036953077.1 mRNA downstream 47819 52261367 ~ 52269318 (-) False sytl1
XM_036953080.1 mRNA downstream 47819 52261367 ~ 52269318 (-) True sytl1
XM_036953079.1 mRNA downstream 47821 52261367 ~ 52269316 (-) False sytl1
XM_036953078.1 mRNA downstream 47846 52261367 ~ 52269291 (-) False sytl1
XM_021572423.2 mRNA upstream 413 52331974 ~ 52351880 (-) False LOC110496489
XM_021572422.2 mRNA upstream 413 52331974 ~ 52351907 (-) False LOC110496489
XM_021572424.2 mRNA upstream 413 52331974 ~ 52351917 (-) True LOC110496489
XM_036951070.1 mRNA upstream 21164 52352725 ~ 52396978 (-) False LOC110496491
XM_036953130.1 mRNA upstream 67097 52398658 ~ 52428130 (-) False LOC110496493
TU1786055 other downstream 66648 52249354 ~ 52250489 (-) True G1561167
TU1786046 other downstream 133930 52179320 ~ 52183207 (-) True trak1b
TU1785112 other downstream 861852 51382672 ~ 51455285 (-) False G1560339
TU1785000 other downstream 1102993 51213155 ~ 51214144 (-) True LOC110496463
TU1783839 other downstream 1666884 50635403 ~ 50650253 (-) True thsd7aa
TU1786137 other upstream 25191 52356752 ~ 52357310 (-) False LOC110496491
TU1786175 other upstream 313428 52644989 ~ 52647777 (-) True G1561279
TU1788031 other upstream 1267089 53598650 ~ 53602694 (-) True G1562762
TU1787983 other upstream 1290339 53621900 ~ 53628422 (-) False tomm7
TU1788090 other upstream 1420845 53752406 ~ 53752683 (-) True G1562816

Expression Profile