RNA id: XM_021572422.2


Basic Information

Item Value
RNA id XM_021572422.2
length 2658
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC110496489
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52331974 ~ 52351917 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACATATGACTCTATGCACAATGGCTACTTTGAACTATTTATAcagtaataaataaaaaaaagtatgcaAAAGCTGTGTAGATGCAACGTTTGTATCTTCCTGTAAATTTGTTTTTGTAAAATCCTCAGTGGAAATTGTTTAAAGTAGTCTTtatgcatagagttgtatggttttttaaactttgaaatcaatgggttttgtttggtatacattttTAAGTGAGGCTCagtgtaattccgttaccatggCCCTGCTACTTTTCTATTCCGTAATTCCCATGAGACTTCACTTAGCTTGTTGATGAGAACGCCAATGGGCTAATAAAGGTCATATTTGGAGCTTGGTCTGTTTTTCTGTGAGAAACAGACTTCTAAAAATACCGTAATAGGCTAGATATCAACCAATCCGCCACTGACCCTGGAGCTCTGCGTCACCACTCTGCCCTCCGGCTGGTCACAGAGCAGGAGAAAGGGTCTGGAGCCTCCAGTTGAAAGTGGGCAGAACAAAGGAAAGCGGAGTTCTTGAAAGGCTAGCGACTGCTTCACGCTACTGTTTTTAACTCCCCACAGTTTCGCAGCAGCCATTCGGTCAGTTGACTCCCACGAGGCACCAGACCGGTCCAGTTGGGAAGGAGAACAAGGCACGAGATGCTCACCGGTTTCCCGGAGGAGGCATGTCAGCCGGTAGCGGTGTGCAGCGCGTGCTGCTGTTAATTATCCCGATGTTTCTACTCGCGCTACAGCTCCTGGTCGGGCTCCGGTTGCCGCGAGCAGACCACGCAGGTAGCCCCGGGTCCTTTAAGGACGGGGTCGCCTTCACGGTGATCAGCATAGAACCGGAGAGAAGGAGCGCGCGCCAAACGGGATCTTTGGAATTTTTACGGGATGAATCGGGAGCGAGCCGCGTGTACGAAGATGAAAACGAGATGCCCATTGGCGACCGGgagagaggtagagggtttGAGCTGCAGCAGTGGGCATCAGGTGAGCCCTCCTTCACTGCAGAGCTGGAACGTGTCATCGCCTACATTACCACACCACAGGTTAACTGTTCCCGGGTGCTTCTACCAGGTGAGTCCCAGGCTTCACAGGCCTCTGGAGCTCTCTGGCTGCTGTGTGTGGAAGGCTGGAGCCTGCCAAGCCATGGTCCTCCGTGTGTAGCATACTCTTTCAGtatGGATGAGGGTGATACAGGGTTTCTGGAGGCTCTCTCAAAGGCCTGTGATGTCCACAGATTTGACCCCAGTGGTCAGCATGGTGACAGAGCCAGCAGTGGTTACCGTGACGATGGTTCTGGTGGGTTTCGACAGTACCGGGCATGGCTGGACTGGCGAGCAGCGAGAGGACGCAAGCAGAAGAAGAAGGGGGTTCTGTGTAGCGGGTCCCGGACACTCAAGGACATCATGGAGACTCTGGGACATCACACGGTAAAAGCCGATGTGGACTTCCTGTATGCTGACCTGCTGAGTGCTGAGTGGAGGGTTCTGCAAAACTGGGCAGAGCTCGGAACTCTGGGGCGCATCCGTCACCTGGTTGCCACGGTGCACCTCCAGTGGGCCGGCTTTGAGGTCAGCGGGACAGAGGCTGAGGTGGTCCGCTATTGGTTCAGCGTTCTACAGGGGCTCCAGGACGCTGGGTTTCGATTGGTCCATAGCTCTCCGGGGGCGGGAAAAAGCGTCCTAAGGCACAAAGTGGACAACGCACACAGCTCTTATACACTAAGCTGGGTTAACACTGGGCTTATACACTGAGACAAACACATGCGCACACCTTGTGCACGGCttacgcacgaacacacacatcaGAATAGTCAGTGGCTATGTTCAAGATCATCAAGACCATGATGTgtcatgggtaaattgtgactgactgatctacaagtAATAATGAGtcgttatttatgatgcaaggtgatttgtagatcagtcagccGGCAGTCGCCTGCACTGTCGCATGCAATGTCGAACTAGCCCAGTCTCTCACCGTCTGTCAGTCAGTAAAATTCCACTGCAGTGTGTCCCTCTGGTGGTGAAAAAAGGGATCTACACCAGTGTTACCCAGTGGAAGGGTCTGGAACTATTAGTTGGTTGCAACCAAAACCACTCCCTATTGGGTCAGGGCTTTATTTTGAAGGTTTAGGCAGGTCCCTCACCTAAAACCTCATTGAAGCCTCCCAGCAgccaaaaaatacaaataaataaataaaagtctgGGCAGTGGGCTCAACAAAATTCTGGGAACCAGCCAGGCACTGCTAGAGATTAATTAGGCTGCCTATTCTATTAACCCAGTACAGGCAATACTGGCTGGCATAGCTTGGCATGGAGCACACCCCTGACAACTGTTGAATGGTAATAAAGTAATCTATTCTATCTGGGACTTCACACTGCAGAAATACAGATCAGGGGTCAACGCCAGTCCTTCATTCAAACACTTTAGTCACCTTTGCTTTATTTATCATTAAGGTTTTATGtactttttatacatttgtataaTCTACTTACGTGAGTTGAGCATGAATATAATATTTCTTTGTGTTATAATTACAGTGTTATGTGGGGTTGATTATCTGCCGACATGTGCAATGTAAAGACATTTATTGATTTCAAAGATGTTTTCATATTTTTACAAGTGCAATAAAAACAGTTGACACCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1786119 lncRNA downstream 13442 52317137 ~ 52318532 (-) True LOC110496488
TU1786124 lncRNA downstream 21441 52310308 ~ 52310533 (-) True G1561233
TU1786121 lncRNA downstream 24309 52307422 ~ 52307665 (-) True G1561230
TU1786116 lncRNA downstream 27123 52304345 ~ 52304851 (-) True G1561225
TU1786115 lncRNA downstream 28386 52303258 ~ 52303588 (-) True G1561224
TU1786134 lncRNA upstream 821 52352728 ~ 52355011 (-) False LOC110496491
TU1786136 lncRNA upstream 3435 52355342 ~ 52355831 (-) False LOC110496491
TU1786139 lncRNA upstream 5587 52357494 ~ 52357912 (-) False LOC110496491
TU1786138 lncRNA upstream 8393 52360300 ~ 52396595 (-) True LOC110496491
TU1786203 lncRNA upstream 59139 52411046 ~ 52412380 (-) True G1561305
XM_021572420.2 mRNA downstream 413 52317137 ~ 52331561 (-) False LOC110496488
XM_036953083.1 mRNA downstream 445 52317137 ~ 52331529 (-) False LOC110496488
XR_005037333.1 mRNA downstream 50099 52271271 ~ 52281875 (-) True LOC110519830
XM_036953077.1 mRNA downstream 62656 52261367 ~ 52269318 (-) False sytl1
XM_036951070.1 mRNA upstream 818 52352725 ~ 52396978 (-) False LOC110496491
XM_036953130.1 mRNA upstream 46751 52398658 ~ 52428130 (-) False LOC110496493
XM_021572427.2 mRNA upstream 47140 52399047 ~ 52428128 (-) False LOC110496493
XM_021572428.2 mRNA upstream 47140 52399047 ~ 52428129 (-) True LOC110496493
XM_036953085.1 mRNA upstream 76318 52428225 ~ 52430909 (-) False sesn2
TU1786055 other downstream 81485 52249354 ~ 52250489 (-) True G1561167
TU1786046 other downstream 148767 52179320 ~ 52183207 (-) True trak1b
TU1785112 other downstream 876689 51382672 ~ 51455285 (-) False G1560339
TU1785000 other downstream 1117830 51213155 ~ 51214144 (-) True LOC110496463
TU1783839 other downstream 1681721 50635403 ~ 50650253 (-) True thsd7aa
TU1786137 other upstream 4845 52356752 ~ 52357310 (-) False LOC110496491
TU1786175 other upstream 293082 52644989 ~ 52647777 (-) True G1561279
TU1788031 other upstream 1246743 53598650 ~ 53602694 (-) True G1562762
TU1787983 other upstream 1269993 53621900 ~ 53628422 (-) False tomm7
TU1788090 other upstream 1400499 53752406 ~ 53752683 (-) True G1562816

Expression Profile