RNA id: TU1786138


Basic Information

Item Value
RNA id TU1786138
length 521
lncRNA type sense_over
GC content 0.53
exon number 3
gene id LOC110496491
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52352725 ~ 52396978 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCACGCATACAGACAGATGCGCGCGAAGcacggagaggagacagacaaCGACGTTAACGGTAGGAATGAACGGAAAATGCTGTGCGCCAGCAGTGGCAGCTGTGATATTACCGAGAACTCAGTGATCCGCACGACGAGAGAAGAGAAGCCCCGCTGCAGCAACGAGCCTCTCCCGaaGTGATGGGCAGTCAAGAGCAGTAgctgagaaagagaggaaagttTATAGTGTGTGCTAGAGACGGGTGTGTAGTATGTGTGCATGAACTGTACTGACATACTGCCGACCCAAAGaaccacagcagacagacagccggCCTGGATAAACTCTACCAGAATGGTACCCAACCCTTCAGGATATAGGTCTGTGACTTCAGAggaacacacataaacacagacaaacagagagagggagagagctccCTAACCTCTCCGAAGAGGGTCACTGGGGCCCAACACTGACACTCTCACTTTGACATTATCATTGCTGTCGCCCTGGGTGGATGAGCCGCCTGTCTGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1786139 lncRNA downstream 2388 52357494 ~ 52357912 (-) False LOC110496491
TU1786136 lncRNA downstream 4469 52355342 ~ 52355831 (-) False LOC110496491
TU1786134 lncRNA downstream 5289 52352728 ~ 52355011 (-) False LOC110496491
TU1786130 lncRNA downstream 9997 52347881 ~ 52350303 (-) True G1561239
TU1786119 lncRNA downstream 41768 52317137 ~ 52318532 (-) True LOC110496488
TU1786203 lncRNA upstream 14451 52411046 ~ 52412380 (-) True G1561305
TU1786205 lncRNA upstream 14935 52411530 ~ 52413003 (-) True G1561306
TU1786186 lncRNA upstream 212508 52609103 ~ 52612099 (-) True G1561290
TU1786267 lncRNA upstream 236086 52632681 ~ 52635148 (-) False G1561366
TU1786268 lncRNA upstream 236086 52632681 ~ 52633827 (-) True G1561366
XM_021572424.2 mRNA downstream 8383 52331974 ~ 52351917 (-) True LOC110496489
XM_021572422.2 mRNA downstream 8393 52331974 ~ 52351907 (-) False LOC110496489
XM_021572423.2 mRNA downstream 8420 52331974 ~ 52351880 (-) False LOC110496489
XM_021572420.2 mRNA downstream 28739 52317137 ~ 52331561 (-) False LOC110496488
XM_036953083.1 mRNA downstream 28771 52317137 ~ 52331529 (-) False LOC110496488
XM_036953130.1 mRNA upstream 2063 52398658 ~ 52428130 (-) False LOC110496493
XM_021572427.2 mRNA upstream 2452 52399047 ~ 52428128 (-) False LOC110496493
XM_021572428.2 mRNA upstream 2452 52399047 ~ 52428129 (-) True LOC110496493
XM_036953085.1 mRNA upstream 31630 52428225 ~ 52430909 (-) False sesn2
XM_036953086.1 mRNA upstream 31630 52428225 ~ 52430909 (-) False sesn2
TU1786137 other downstream 2990 52356752 ~ 52357310 (-) False LOC110496491
TU1786055 other downstream 109811 52249354 ~ 52250489 (-) True G1561167
TU1786046 other downstream 177093 52179320 ~ 52183207 (-) True trak1b
TU1785112 other downstream 905015 51382672 ~ 51455285 (-) False G1560339
TU1785000 other downstream 1146156 51213155 ~ 51214144 (-) True LOC110496463
TU1786175 other upstream 248394 52644989 ~ 52647777 (-) True G1561279
TU1788031 other upstream 1202055 53598650 ~ 53602694 (-) True G1562762
TU1787983 other upstream 1225305 53621900 ~ 53628422 (-) False tomm7
TU1788090 other upstream 1355811 53752406 ~ 53752683 (-) True G1562816
TU1788103 other upstream 1477815 53874410 ~ 53875592 (-) True G1562828

Expression Profile