RNA id: XM_036953118.1


Basic Information

Item Value
RNA id XM_036953118.1
length 2484
RNA type mRNA
GC content 0.52
exon number 12
gene id sesn2
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52428225 ~ 52436609 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACACGCCTTCAGAATGAAGAAtccaccatttaaaaaaaaatctgtgacgTCAGTGGGCACGCAGAAGTAGAGGAGTTGATACCGGCGAATGGACAGATGATGAAAGTCAGCAAATTTCTCCACATCTGAAAGATCACCCGGACAAGTGACGAATATCTGTCACATATTCGATACCAGAACCTTATATAATGGACGTATATTGCTGCAGACGCTTTCGCTGTTTTGATCCGATTCAAATTGACAGGGATGAACAACTTGCTAGCCTTCGGTAATGATGTGCCCCGTGCTCGAGACGTTAGCAAGCTAGATTCAAAttaaatgtgttgtcattacttgagaaaaaaaatctgtcgattTGAGAACAAAATATGTGGGGATTACTGCCGACTACGGTCAATTGACGAAATCTGACTGAGTTGTGAAAGCctaaatgctaactagctagcacacCAGCATTCCGAAACCAGcgttagccagccagctagccagctagGGACAAGGCACGGGAGGGTTCTGTGCAGGTTGTTATGGAAGAGGTGGCGCTAGAACCACCGACGGACGCGCTCTGTGAATGTAATGGAGGTAGAACCACCAACTCCGAAGATCCCAGACCTAAAAGCCGACATCATCAACCCGAACTCGGGCCGAACCCGAGTAACTTTTCTCGGCTGTGCAGCAGGGACGAGGCGGAGAGGGCAGAGGCGCTGAAAGAACTGACCCAGAGCGTCATGTCCCGATTGGGTCTGGACCGAACCGGTTCTGCTCGTCTCGATAAACACACTCTCCTGCAGCTGCTGCGGGTCTCCCGGTCCTGCCCCTTACAGGAGGTCCGCGAGAGGGCAGCGGAACTACTGCGGACTGCACAGgagcAAGGTGTTGAGATTCCTCAGGCTTTGGCCTCCGGTCCTAGTGCCTTCATCCCTGCACAAGTGATTTTGGATGAGGGACCAGATCAGGAAGTTCTGATAGAAGCCTTCCTCTCTTTGGGCCGTTTTGACCACATCACCATGGTGATGGCCCTTCACCCCACCTACCTCAGCTGCTTCCTGCGTACCCAGCATGCTTTGCTGGAGCTGGATGGCCCGCTACCCCGCCCCTGGAGGCACTACATCGTTGTCATGgctGCAGCTCGTCACCAGTGTTCCTACCTTGTCCAACAGCATAGTGCAGGGTTCCTGGAGGCGGGGGGGGAGGAGAGCTGGCTGGAGGggctacaacacacacaccccaaaatACGCTGCCTACACACACTTAACAAGCTGCTGGCACACAGACCCTGGCTCATCACACAACAGCACATAcagGAGTTGGTGTGTCCCGGGGCGGATGATCGTTGGTCATTGGCTGAGCTGATCCACGCAGTTGTTCTGATGACTCACTCTCATTCGCTGTCCTCTTTCGTTTGGGGGTGTGGCCTACACCCTGAGCCCGACCACGTAGGAGGCCACGCCTTCTGCCCACCATCACCATCCAATAACATGCCACAAAGCCCTCACAGTCCCGCCCCCGAGGACGGCAAGCCAGAGgatggagTGACGGAGGTGGAGGCATTGATGAAGAGGATGGTGGAGTTACAACAGCAGGTGGAGGAGTGTAGTCAGGAAGAGATGATCACTCGctttgagagggagaggagtgagagcaTACCtactgcagtggtaCGGGGAGCCCCCTCTGACTTGGTGTTGAGGTTAGTGGAGGATGCAGAGTTCATCTATGAAGACTTCTCCATCCGAGGAGAACAGTCACCTCCTACCATGAgagcacaggacTACTCATGGGAAGACCATGGATTCTCCCTAGTGAACAGACTGTTACCAGACATGGGCCAATTACTGGAGGAGAAGTTCCAGgttgtgtgtggtcTAACCTACAACAGGATGGCGATGCACAAggatgtggacacacacacactccgcaaGGCTCTCTGGAACTACATCCACTGCCTCTACGGAATACggtacgaTGACTACGACTACGGAGAGGTGAATGTGTTGTTGGAGCGAGGCCTCAAGATGTTTGTGAAAACGGTAGCGTGTCATCCAGAACAGACTACAGATAGGATCTACTCTGCCTACTGGAGACTCTTCAGACACTCTGAGAAGgTCCATGTCAACCTGCTGCTGATGGAGGCTCGACTACAGGCTGCTCTACTATACACACTACGGGCTGTCACACGCTACATGACATGACTACAGGCTGCTCTACTATACACACTACGGGCTGTCACACGCTACATGACATGACTACAGGCTGCTCTACTATACACACTACGGGCTGTCACACGCTACATGACATGACTACAGGCTGTGACACGCTACATGACATGACTACAGGCTGCTCTACTATACACACTACGTGACATGACTACAGGCTGCTCTACTTTACACACTACATGACATGACTACAGGCTGCTctactatacacactacatgacatgactacaggctgctctactatacacactacaggctgtcacacgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1786205 lncRNA downstream 19055 52411530 ~ 52413003 (-) True G1561306
TU1786203 lncRNA downstream 19678 52411046 ~ 52412380 (-) True G1561305
TU1786138 lncRNA downstream 35463 52360300 ~ 52396595 (-) True LOC110496491
TU1786139 lncRNA downstream 74146 52357494 ~ 52357912 (-) False LOC110496491
TU1786136 lncRNA downstream 76227 52355342 ~ 52355831 (-) False LOC110496491
TU1786186 lncRNA upstream 172494 52609103 ~ 52612099 (-) True G1561290
TU1786267 lncRNA upstream 196072 52632681 ~ 52635148 (-) False G1561366
TU1786268 lncRNA upstream 196072 52632681 ~ 52633827 (-) True G1561366
TU1786269 lncRNA upstream 196879 52633488 ~ 52634262 (-) True G1561367
TU1786181 lncRNA upstream 203708 52640317 ~ 52641070 (-) True G1561285
XM_036953122.1 mRNA downstream 730 52428225 ~ 52431328 (-) False sesn2
XM_036953132.1 mRNA upstream 4497 52441106 ~ 52455245 (-) False matn1
XM_036953131.1 mRNA upstream 4497 52441106 ~ 52455249 (-) False matn1
XM_036953134.1 mRNA upstream 4497 52441106 ~ 52455251 (-) False matn1
XM_036953133.1 mRNA upstream 5366 52441975 ~ 52455249 (-) True matn1
XM_036953135.1 mRNA upstream 25760 52462369 ~ 52471347 (-) False LOC110496494
TU1786137 other downstream 74748 52356752 ~ 52357310 (-) False LOC110496491
TU1786055 other downstream 181569 52249354 ~ 52250489 (-) True G1561167
TU1786046 other downstream 248851 52179320 ~ 52183207 (-) True trak1b
TU1785112 other downstream 976773 51382672 ~ 51455285 (-) False G1560339
TU1785000 other downstream 1217914 51213155 ~ 51214144 (-) True LOC110496463
TU1786175 other upstream 208380 52644989 ~ 52647777 (-) True G1561279
TU1788031 other upstream 1162041 53598650 ~ 53602694 (-) True G1562762
TU1787983 other upstream 1185291 53621900 ~ 53628422 (-) False tomm7
TU1788090 other upstream 1315797 53752406 ~ 53752683 (-) True G1562816
TU1788103 other upstream 1437801 53874410 ~ 53875592 (-) True G1562828

Expression Profile