RNA id: XM_021572429.2


Basic Information

Item Value
RNA id XM_021572429.2
length 2524
RNA type mRNA
GC content 0.55
exon number 9
gene id LOC110496494
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52462369 ~ 52472077 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTCTGTCTTCAATTTGCTAATTTGTCAATCAACCTTATCACGTCTCGAAACGGTGCAAACTCATGCATCAATTCCAAAAAAGCGTGTTTGACTTTATCGGTAAATAAATTGCTAGTTTAGAGTTTGATGCTCGTGAAAGCAGGTTCGTTATGGATGACATGCGTGAGGCAGCGGATGATTACGACTGCCCAAGCCTCCTGTGTGATGaacaggaggatgaagaggaggagagttaccgtGGAGATGAGaccggaggagaggaggggggagatatAGAAGAATGGGACACTGgacaaagaggaggagagagagtggaggaggaagaagagaatggaggagagatggagaagaatgGAGAGATGGGTGAGGATGGAGTAacagaaagagaaaaggagagtgaGGTGGTAGTTGATTttgaagaggaggggggagagatggagaagagacagTTGAGAAAGAGGATAGGGAGGGCAgaaaaagagaaggaggaggaggcagtGTTAATTGAGGATAGGAGAGGGAGTGTAGAGGAGATgaaggacagaagagagagagatgggaaggtaGAGGAGGAAAAAAAGCAGAAAGGTGTGATGGGGCCTGCTCTGTCTCTCGATCTCGTCGGCGTGACAACTGACCCTGTCGGCATGACGACCACCACTCATGAGGACTCTGGGTACCTGAGCTCTGGGATGGGGTTCTACTGTCCCCCCGGACCTCTCCTATTCCACACCCAgcctaaaccacacccccaaccCCTTCTGCCCAGTGGGGTGAAGCGCCCACATAGTGtcagcccccctccccctcccacccaAAGCCTACAGGTTAAGGTGACTCGAGTGTACTCTACTCGCCGTTCGATTGGCTACAGTGCCCGGGGGCGTGGCCAGGTGCTTCCCCTCCCCCTGTTGCCAGCGGTAACCATGGGAGACCCCTCCCTATTGCCCTCCCTGCCCAAGAAGAAGACAAGAACACTCTACAGCACTGaccagtTGGAGCAGCTAGAGGGAATGTTCCAGGAGGACCACTACccagatggagagaagaggaaggagattgCCGCCACGGTGGGCGTCACACCCCAGAGGATCATGGTGTGGTTTCAGAACCGTAGGGCCAAGTGGAGGAAGGCCAGTCGTTCTGCAGTGAAGCCAGAACACAAACAGACCTGCAGCCGCctccctgaccccaaccctaccTCGCTCCTTGCACCACACCCTAGGGCGGCTGCAGGACACATcgcccccttcctccctcctgctggtctctccttacctctccctcCTACCACCCAGGCACTCCCTTCCTACAGCACCCTGCTAGCCAGCCTTTCATCCAGCCCTACAGGCAGgtcagtaggagagagagggccaCCGTCAGGACCTCAGGGAGGGTCAGTGGAGCACCTACCTCCTATCATGTATAGCCCACCACCTTTACGACGTGCCAGCCTCCCCCTTCTGACTACCTTCCTGAACCCCCCCAAACCTACCCCCAGCCCCACTCCACCAACCCTGCAACCCACCCCAACATCACCTTTCTTCATGGATGTGTTGGAGCCCCACCCCCCcaacagagacacacagggacTCACCCTGCAGACTGACTCTGGTTCTCTATTTGACTACAGCAGTGATCTCCTGTCCAGCAGCAGCAGCTCAGTGAAGATGGATCCTCAGCACTACCTTACCTCCAGCCACCAGGGTGGCGCTACAGTCTCCTACCAGCCCCAGGCCTCCCGCCTGGCctacctcaccccctcccccTACCTCAACCCAAACCCCCCTGAGGGGAGCGCCCCTCCCCCCTCCTACCTTACCTTTGGTCCAGGGGGTGGGCCCGGGGTAGTGACCTATGCAGCTGGAGGCCACACCTACTTCCAGGCACAGACAGGAGGGGGACAGATCCTACTGCAGTCTGGGATACACGgtggtATCACAGCCTACCAGTCGTACCCGTGGGATCAGCTCTACAGCCACCCAGCAGGCATCCAGCAGCGTAACCAGTGTTCCCAGTTTACTACCACCACACTGGGGGGCCGAGACCACCCAACCTCCTCCTCCTACCTGCCACCCACTTACTGTCCCcgctcacacactctcacacacacctctacccAGGCCCAGGTCCTGCCCCCAGTTTCTACCCTGCGACACCCCCACCCCAGAGGGGTCAGCGCCCCCCAGCCCAGAGACCCCACACCACCCTTGGCCCTCCTGGATCCCCCCACCTGTGTGAAGGCTGAGAATGAGAGCCCTCCCCATATACACAGCAGCCACTTCCACTGTGACTTCTCACCCATACTCTTTTGACAGACCTGGGGGTTGTTATTCCTGTCTTCATatcttgcttagttaaataaaggttaagtaaaaaaataaaacatctgtgtgtgttttctgtatgTTTATGTGAGTATGAATGTATATGTGCCTACGTGTGTGACTGATATATTTTGAGGCTCATTATTGAGACAGACGGTTCTGTTCAGGTTGTTGGACTGTAATAAAGGCATGTT

Function

GO: NA

KEGG:

id description
K24199 NOBOX; homeobox protein NOBOX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1786205 lncRNA downstream 49366 52411530 ~ 52413003 (-) True G1561306
TU1786203 lncRNA downstream 49989 52411046 ~ 52412380 (-) True G1561305
TU1786138 lncRNA downstream 65774 52360300 ~ 52396595 (-) True LOC110496491
TU1786139 lncRNA downstream 104457 52357494 ~ 52357912 (-) False LOC110496491
TU1786136 lncRNA downstream 106538 52355342 ~ 52355831 (-) False LOC110496491
TU1786186 lncRNA upstream 137026 52609103 ~ 52612099 (-) True G1561290
TU1786267 lncRNA upstream 160604 52632681 ~ 52635148 (-) False G1561366
TU1786268 lncRNA upstream 160604 52632681 ~ 52633827 (-) True G1561366
TU1786269 lncRNA upstream 161411 52633488 ~ 52634262 (-) True G1561367
TU1786181 lncRNA upstream 168240 52640317 ~ 52641070 (-) True G1561285
XM_036953134.1 mRNA downstream 7118 52441106 ~ 52455251 (-) False matn1
XM_036953131.1 mRNA downstream 7120 52441106 ~ 52455249 (-) False matn1
XM_036953133.1 mRNA downstream 7120 52441975 ~ 52455249 (-) True matn1
XM_036953132.1 mRNA downstream 7124 52441106 ~ 52455245 (-) False matn1
XM_036953119.1 mRNA downstream 25760 52432058 ~ 52436609 (-) False sesn2
XM_036953139.1 mRNA upstream 1133 52473210 ~ 52511642 (-) True LOC118941185
XM_036953142.1 mRNA upstream 42608 52514685 ~ 52548018 (-) False pum1
XM_036953140.1 mRNA upstream 42608 52514685 ~ 52551625 (-) False pum1
XM_036953141.1 mRNA upstream 42608 52514685 ~ 52551626 (-) False pum1
XM_036953143.1 mRNA upstream 42608 52514685 ~ 52551627 (-) True pum1
TU1786137 other downstream 105059 52356752 ~ 52357310 (-) False LOC110496491
TU1786055 other downstream 211880 52249354 ~ 52250489 (-) True G1561167
TU1786046 other downstream 279162 52179320 ~ 52183207 (-) True trak1b
TU1785112 other downstream 1007084 51382672 ~ 51455285 (-) False G1560339
TU1785000 other downstream 1248225 51213155 ~ 51214144 (-) True LOC110496463
TU1786175 other upstream 172912 52644989 ~ 52647777 (-) True G1561279
TU1788031 other upstream 1126573 53598650 ~ 53602694 (-) True G1562762
TU1787983 other upstream 1149823 53621900 ~ 53628422 (-) False tomm7
TU1788090 other upstream 1280329 53752406 ~ 53752683 (-) True G1562816
TU1788103 other upstream 1402333 53874410 ~ 53875592 (-) True G1562828

Expression Profile