RNA id: XM_036953139.1


Basic Information

Item Value
RNA id XM_036953139.1
length 4433
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC118941185
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52473210 ~ 52511642 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCCGAGCGGCGTCGCCATAATAAGGAACATCCTGCTTtcgacagagagggggaggatagagcTGAGGTCTGGCATCTCCCGGTAGTAGGCTATATCTACCAGGTCTTGAACACTAAAGGGTCCAACAGAGGGGGACAAAATAATAGAAAGAAAAGGGCTTCCGTCGTAGGAAGAAGGAATCTCCACTCGTTTTATGCCTGGTACTATTACCGGAGAAGGACACACGCCGGTTTAGTGTTTTACCGATACGGATTAATAACACGCCAGACGGATGTTCGCGAGGAGGGGCGGTGCACTCTGAAGTTAGAGACTACTGCCTACCGAGAGAAGCGCTTGTTCCCCCGTGAAGGTTCGCGCCCCCCAGCCACAGCATGAAGCTGCCGCCGTGTCTGATGACGATCCTCGCGGCGCTGCTCGCTCACTCCGCGCTGggtCAGACCTGGGTTCCGTCTATAGATCTAGAAGATTCTTCTGGAGATGAGTTCTATGATGATGAAGACCTCTTCTCAGGCTCTGGATCTGGCTTTCCAGAGATGAAGGTCAACCCTACAGCGGTGGGTGTGTCTTTCAGCACTGAGGAGCCCCTTCCCCTTTCCACCACCCAGGCTACTGGCCCCGCCCCCTCAGCCCCACCTGCAGCCGAGCCCAATCCCAACCCCGACGCTCTCCCCACCCCACTACCcactgagggagagggggagagtgggatagagtgggagagagggagggagagagagagggagagggaaagagagagagtaagggagatggagcgggagagagaacgagagcgggagagggatagagagagggagagagaaaaggagagggagagagaaagagagagagagaggcaacggGAAATAGAGAGGGAACGAGAAAGAGAACGTGAAAGAGCGAGAGCCGCCCAGACCACCATCTCACCCCGTGGCCCGGCGGCTGTTCCCATGGCGACCACCAGCACAGCGACGCCTCTGGCGGAGAGTGTAGCACCCTCTAGTGGCGTGCAGGACCTGGTCACCacagaagaagaggacgaggaTGTCTACCTGTCCCCAGACCCCACCACCAGTATGCCTATGGAGACCACcacggaagaagaagaagaagaggaagaagtgaCCACTACAGATACAGAGACCACACCCCTCCCAAAGACAACAGCTCCACCCACTACGATTGGCCCAGCCCTAACTGAGAGGTCTAGCTCCGCCCCCTTTAGGCCCAGTGTTCTGGTGACCACGCCTATTAAAGCCGCACCCACAGAGAGGAGCACACGCCCACAGCAGCCTTCTACGacaatgaatAATGAATTAGGCGTTAATGGACCCAGCGGAGACTTTGAGATTCGGGAGGAGGACCGTCGCCAGGGCAACGAGGTTGTTGGTCGTGGCCTTGGCATGGAGACTGGGGCAGAACCTGATCTGATTGGCAACACAATTAACACAGGAAGTTCTGCCGCTCAACTTCCTCAGAAGAACATCTTGGAGAGGAAGGAGGTTCTGAtagCGGTGATAGTGGGGGGCGTGGTGGGGGCCCTGTTTGCAGCGTTCCTGGTCATGCTGCTGGTGTACAGGATGAAGAAGAAAGATGAAGGCAGCTACACACTGGAGGAACCCAAGCAAGCCACCGTCACCTACCAGAAAGCTGACAAACAGGAGGAGTTCTacgcataacacacacacacagtgtgttatCACTCCAGCTCCCTTCCAGTCCTGTCGCTTCACATCTCCTTCCCATCCTTCTCCCgtatcttcctccctctcttctctcctatctTCCTGTCCTCCATGTCAGTTGTTACTGAGAGTGCCCGTCTCTCCACGGACTcaaacatttctttaaaaaatataaatacacttttaaaaaaataacaaaataaatatatcagctggaaaaaaatatataaaaatgtgatacacaatttttttttttttttaagtaaatgtTGTTATTGATATTATATGATTATTGTTCTGATGATGTAATGAACTGATTATTTTGTAAAAACACAAGCTCTTATCCGGTGTTCTAGCACAATACTCTAGTGTCTGTTCCACGGAGCGAATGAGCCAAGTgacagagggatgggggagaagaagggacagagacaaacagaggagGAAAGAGTGTCATCTGATTGGCCACACAGACACTGGGGTCAAAGGTTAGAGGAAAGGTCTCTATTGTAGTGCCTTCCATTGCCCTggtgctctctcacacacacacacacacacatggcttgGACCCCTCTCTCTGTGCTTGGCCAATCAGAGTAGGGGAAACCTCCTACAACGCTCTGACAACCTCAGGACAACGTTGTGGCAGCATTCACTGGTAGTTAGCAAGGGATTCTAACCAGGGATATAGTGTTAAATAAAATGGTGGGTAAACAAACCGCTGGGGTAACATAAACATTAGCTAATGCTAACAATGCTACCTGATGGTAGTAGAGTTGTGTAAACACTGTTCACCAAGTGAAGGGGTGTTTAAACAACAGATTATGAGTGTTTACCCTCCTCAACATccctgggttgtattcattaggcaccaaacaaagaaaacggactgaaacagagaggactacctggtccaataagaaatgcacaTTTCCGTattccattgcaaaatgttttacaACGTTTTCCGTTGTGTGTcaatgaatacgaccctggtgCTGAATGCTAACACAGGGCTAGCGGCTAGCTGTCTGGTTTGCTCCTTTACGCTGTACAAAGGTGATTAGTTCTATGGATAGTAATAATAACCAATAATATATCAATGTTCTGGACTGGTTGGTAAATAatagtaataatgaaaataataCTCGAATGAACAAAAGGATGTGTATTTAGCGGTTTCAAAAGTTTATATGTAAATAATCATTGGTTGAAATACTTTTTCTGTCGTTGCCACTAACCAGTCGCATGATCACCATTTCTATATCACGTCAATCTGTGGAGCTGTGCTCTCAAcccacatacaccacacacactcacaagtaCGCACTCACACACTTAAGCAAATATACACACGCCGTACATGCAAGCATGCGCTCAcaagctcaaacacacacacacacaaatatatcaCTTGCGCTTCATtgactaaatatatatatatataaatcatatCACTCACTCAAcatattatcattatcatcatcacacAAGCTGGTTTCAGTACATTATTAATAAGTGGCTGATCAGTTGCTGGTTGGTTAGAGTTTGGTCCGTTGTGTAAAGGCACCAGCATGTATCCATCCAATCCCCTgcatgctctttctttctcttctacCATTGGCTGTCTATTTGGGGGTGGGCTGGTCTTTGGGACTGTGAGGGAGGGGCTTACGATGCTGAAAGTGGCTCTTCAAGTAGAAGTTGTCCATCAGTAGGTGTGGGGACAGGAGTTAAGGTGGGGGCAGTGGGTAGGGGTGGGGACAGGAGTTGAAGTGGGGGCAGTGGGTAGGTGTGGGGACAGGAGTTGAAGTGGGGGCAGTGGGTAGGTGTGGGGACAGGAGTTGAAGTGGGGGCTGTGGGTAGGTGTGGGGACAGGAGTTGAAGTGGGGGCTGTGGGTAGGTGTGGGGACAGGAGTTGAGTTGGAGGCTGTGCTTTCTATCTAAGATTGTAACAATAACCAACACACCAGTACGACTGGACTAGTAGCTTCTAATATATTCAGTACTGTAGAACAACTGCATGGGAGTCAAACTATactagtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttctgagagGAATGTACTGTGGGCAGGTGTGTATTTTACCTGCTCCAGCAGTTCTGACGCTCTTCCATAGTCAGGTAGTCACACCTGTACCCCTGTGTGTGTACGCCTCAACTGCTTTGCCCCCTCTTTTTTTTTAAGCAGTGAATGCCTCACTCTTATTTCACAtcagacttgtgtgtgtgtgtgtgtgtgtaggtctcaCCTGTTCACTGCTGAATGTGGGGCTAGTCTGCTTTTTCACACACAATCTGTCACTCACGGTCTGTTTGTCTGTAGCAGGACTGACTGACGTCACACATCACAGACAGAACTGACCTGAACTGTCTTTTCTAAACTTACCTTCCAACTGTTAACATGTGTTTGTACCCATATAAGTCTGCATAGCCAAataatagagaaagagagtgtgagtgtgtgagtgtgagtgagtgagtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgccaagTTGGTGGAAGGCCACACCACACTGTGTTTGCTGTTACCCATcctgtttttatacatttgcatttTTTAAGGCTGTTTCTGTCATTGGCTGCTGAGCGCTGGGAGGCGGACCTCTGCGCCACGGCCCTGCCACTAATTTGCCACTCTGTTCCAAATAAAAGACCTCATTGGTTAACA

Function

GO: NA

KEGG:

id description
K16337 SDC3; syndecan 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1786205 lncRNA downstream 60207 52411530 ~ 52413003 (-) True G1561306
TU1786203 lncRNA downstream 60830 52411046 ~ 52412380 (-) True G1561305
TU1786138 lncRNA downstream 76615 52360300 ~ 52396595 (-) True LOC110496491
TU1786139 lncRNA downstream 115298 52357494 ~ 52357912 (-) False LOC110496491
TU1786136 lncRNA downstream 117379 52355342 ~ 52355831 (-) False LOC110496491
TU1786186 lncRNA upstream 97461 52609103 ~ 52612099 (-) True G1561290
TU1786267 lncRNA upstream 121039 52632681 ~ 52635148 (-) False G1561366
TU1786268 lncRNA upstream 121039 52632681 ~ 52633827 (-) True G1561366
TU1786269 lncRNA upstream 121846 52633488 ~ 52634262 (-) True G1561367
TU1786181 lncRNA upstream 128675 52640317 ~ 52641070 (-) True G1561285
XM_021572429.2 mRNA downstream 1133 52462369 ~ 52472077 (-) True LOC110496494
XM_036953135.1 mRNA downstream 1863 52462369 ~ 52471347 (-) False LOC110496494
XM_036953136.1 mRNA downstream 1863 52462369 ~ 52471347 (-) False LOC110496494
XM_036953137.1 mRNA downstream 1863 52462369 ~ 52471347 (-) False LOC110496494
XM_036953138.1 mRNA downstream 1863 52462369 ~ 52471347 (-) False LOC110496494
XM_036953142.1 mRNA upstream 3043 52514685 ~ 52548018 (-) False pum1
XM_036953140.1 mRNA upstream 3043 52514685 ~ 52551625 (-) False pum1
XM_036953141.1 mRNA upstream 3043 52514685 ~ 52551626 (-) False pum1
XM_036953143.1 mRNA upstream 3043 52514685 ~ 52551627 (-) True pum1
XM_036953151.1 mRNA upstream 40826 52552468 ~ 52557653 (-) True nkain1
TU1786137 other downstream 115900 52356752 ~ 52357310 (-) False LOC110496491
TU1786055 other downstream 222721 52249354 ~ 52250489 (-) True G1561167
TU1786046 other downstream 290003 52179320 ~ 52183207 (-) True trak1b
TU1785112 other downstream 1017925 51382672 ~ 51455285 (-) False G1560339
TU1785000 other downstream 1259066 51213155 ~ 51214144 (-) True LOC110496463
TU1786175 other upstream 133347 52644989 ~ 52647777 (-) True G1561279
TU1788031 other upstream 1087008 53598650 ~ 53602694 (-) True G1562762
TU1787983 other upstream 1110258 53621900 ~ 53628422 (-) False tomm7
TU1788090 other upstream 1240764 53752406 ~ 53752683 (-) True G1562816
TU1788103 other upstream 1362768 53874410 ~ 53875592 (-) True G1562828

Expression Profile