RNA id: XM_036953141.1


Basic Information

Item Value
RNA id XM_036953141.1
length 6680
RNA type mRNA
GC content 0.51
exon number 24
gene id pum1
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52514685 ~ 52551627 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgcacagagatactgtgaagagatcctgaggcccattgtcatgccattcatccgccaccatcaactcatgtttcagcatgataatgcacggtccCATGTGGCAAGGATCTGTactcaattcctggaagctggaaATGTCCCACTTCTTCCATGGCATGCATACTCattagacatgtcacccattgagcatctGACTAAGAATGACTACCAAAATCAATAAAACCACATGTAATTTGCCTGGAACCGACCCTGACTGTGGCCCCTCATGAGAAGTTCAGGGTTTTTGTGGGCCCCACACCATCAGTTGCCTATCCCTGGTTTACTTTATTCTAGTGACAGTAACACACTAGACTAGCTTCACTATTGAATTGTAATTTATTTGGTTGTTACAGGCTACGCCCTACTTTTGACTATGGCTGTTGGTTGGTTTACATTCCACCAGTCTAGCAGAGCATCCAGATCCAGCCTCGTGAACACCCTCTGGGTCTTTGTGTCTCAGCACGTTGCCGTGGCTGCGGCTGGACTCCATCCATTACGGTCATAGTCCGCTGAACATGCTGTACCAACCGGAATAGCAGTATGTTTATTATATGTTTATTATAGGGGAACATCAGCCCAGGGGATCTGGGACTGGGAATAAACTGTCCAGATTTACCTAACCAGTGTTTTTGATATTTAATTATTAGTATATTTATTCGTTTATTTTTAGGTTATTATTGTATTTTTGTCGATTGTGAGATAGAATACATCATGTCAACAAAGCCACCATAACAAAGGACTGGCAGTGGTGAAACGGTTGGCGCAATGAACCGCACGCGCTCCGCTCTCGCCATCTTCCGTTCCCATGATGCAGCGCGTCAGCCTGTCTCTGAGTCCCTCCGAGCCGCCATGTTGTTGGAGTGAAAGCTTGGAAGTCTGGAAAGAGAACCGGGGCTGAAATCTGCGACCATCTGCCCTCTCCACCTGCCTTGGTGGaatgagcagtgtgtgtgtgttgaagggtAAAGCAGTGCTCTGGCAGGACTCATTCAGCCCCCACCTCAGAACTTCAACTCCCAGCATGCCCGTGGTGCTGAGCAGCGGAGGACACGCCCCCCCTGCCGGACAAACCCCACATGCCCCATCCCCTAGCCAACAGGGCGTGGCGGGTGCCGGTCGGTCTCAGGATGATGCCATGGTGGATTACTTCTTCCAGCGGCAGCACGGAGAGCAGCCTGGCAAACACCGCTGGCCCATTGGGGATAACATCCACGACAGCCAGgtGCGGTCGATGGATGAGCTGAACCATGACTTCCAGGCCCTGGCTCTAGAGGGGCGTGCCATGGGAGAGCTTCTGACAGGTAAGAAGTTTTGGGAGAGTGATGAAGCGGGGAAAGACGGACCAAAAGGCATCTTTCTGGACCAGTGGAGGGACAGCGCGTGGGGGGCCACAGACCACTCggtatctcagccaatcatggtgTCCCGTCGGCCTGGCGGTGGGTTCCATAGCGGCGGGGAAGTGGGCGGGTCAGTGATGTCACCGCGGTCAGAGAGTGGGGGTTTAGGAGTCAGTATGGTAGAGtacgtcctctcctcctctcccgctgAAAAACTGGACTCCTGCCTACGCAAGGGACCCTACGGCccgagggatggagaggtggaggatgagAAGAGGGAGAAACCTAAGGCTGCGTTTGAAGTAGAGAAACTCGAGATgacggagggagagaatgatGTCATCAGTGATGTCATCAACCCTAATGGGCTCCCTGTGCAGAATGGCCTGGACGTGGACGTCAAAgagtacagtCGTCAAGGCCAGATGCAGCCTGCGGGGACAGACACTGACATGATGGGGGGTGTAGGGGGATGTGTAGGAGGGGAGGGTATGGTCCCCATGGGAGGAGGCGGGGGTCCCAAACCCCAAGAGGACTTCTCTGGTGTGGAACAGGGCGTAACCATGGATACCATGGAGTCTGTGATGGAGCCTCTGCAGTTTGACTACAACTCCCAGATGGCCATGGACTCACAGCCCACCGTGGGGCTGTTTGACTACAGCAACcaacaacagttgtttCAGAGACCCAGTGCTCTAGCACTGCAGCAGCTGACAGCAGCCCAACAACAACAGTACGCCTTGGCAGCAGCACAGCAATCTCACATTGGTCTGGCTCCTGCGTTTGTTCCCAACCCTTACATCATCAGTACGGGTCCACCTGGAACTGACCCCTACGCTGCTGGACTGGCAGCTGCTGCAACACTAGGCCCAGCGGTGATGCCTCCTCAGTACTACGGGGTGACTCCATGGGGAGTGTATCCAGCTAATCTGTTCCAGCAACAGGCTGCAGCTGCCAACAACTCAGCCAATCAACAGGCTCAAGGACAGAACCAGCAGAACCAACAACAGGTAATGCGTGGGGGCGGTAACCAGAGACCCCTGACCCCTAGCCAAGGTCCACAGGGTCAGCAGAATGACCAGCTGATCTCCGCCGCAGCTGTCAACTCGGCGCTCGCCTTCGGACAGGGGCTGGCGGCCGGCGTGCCTGGCTATCCCATGCTGGCTCCAGCTGCCTACTATGACCAGACGGGGGCGCTAGTGGTCAACACAGGATCTAGGAGTGGACCTGTACGCCTCATGGCCCCCGCTGGCTCAGTTATTATCTCTCCATCCGCTGCACAAGCAGTTGCGGCTGCAGCAGCTGCGGGTGGCGGGGCTAACGGCGGTATGGGAGGCGGGGCCAATGGTCCGTTCCGAGGCATGCAATCCCAGCAGCCTCAGCAGCAGGGGGGAGGGGCTATGTCAGGAAACTCCTTTTATGGATCCTCCTCTCTCAGCAACTCCTCCCAGagctcctccctcttctctcaagGTAGCCAAACAACGTACTGCTCCGCCCAGCCAGGCCCTGGCTCTGCCTCTCTGGGGTTCGGTCAGAGCAACTCTTCACTGGGAGCAACATTGGGAGCTACGCTGGGAGGCTTTGGGaccgcagtgGCTAACTCCAGTGGTGGAAGTGGTTCTCGTCGTGACTCTCTGACCGGCAGTAGTGACTTGTACAAACGCACACAGTCGAGTCTCACTCCCATTGGTCACGGGGGGTTCTACAACGGAACCCTTGGCTTTAGCTCCTCCCCCGGGCCTGTCGGAATGCCCCTGCCCAACCAAGGCCCCTCCCACTCCCTAACCCCACCCCCATCTCTGTCCAATCACAGCTCCTCATCCAACCTCAACCTGGGAGGTTTGACCAATGGCAGCGGTCGTTTCATTTCTGCTGCTCCGGGGGCGGAGGCCAAGTATCGCAGTGCCAGTTCTggctcctccctcttctctcccagcAGCCAGCTCTTCCCATCGTCACGGCTACGTTACGGAATGTCGGATGTGATGCCGTCAGGGCGGAGCCGGCTCCTGGAAGACTTCCGGAACAACCGCTACCCCAACTTGCAGCTGAGAGAGATTGCTGGGCACATCATGGAGTTCAGTCAGGACCAGCATGGCagcagGTTTATCCAGTTGAAGTTGGAGAGGGCCAGCTCAGCAGAGCGTCAGCTAGTCTTTAGTGAGATCCTCCAGGCTGCCTATCAACTCATGGTCGACGTCTTCGGAAACTACGTCATCCAGAAGTTCTTTGAGTTTGGCAGTCTGGACCAAAAGCTGGCTCTAGCAGAGAGGATCAGGGGTCATGTCCTGTCTCTGGCCCTGCAGATGTATGGCTGTAGAGTCATCCAGAAGGCCCTGGAGTTCATCCCCTCAGACCAACAAGTTATAaGTGAGATGGTGCGGGAGCTGGACGGCCATGTATTGAAGTGTGTGAAGGATCAGAACGGCAACCACGTGGTGCAGAAGTGTATTGAGTGTGTTCAGCCCCACGCACTACACTTCATAATAGATGCCTTCAAGGGACAGgtgtTTGCCCTCTCCACCCACCCCTACGGCTGTAGAGTGATCCAGCgtattctagaacactgccttccagaccagaccctgCCCATTCTGGAGGAGCTGCACCAACACACTGAACAACTGGTGCAGGACCAGTATGGTAACTATGTGATCCAGCATGTATTAGAACACGGCAGAGCGGAGGACAAGAGTAAGATAGTAGCTGAGATCAGAGGAAACGTACTGGGGCTCAGCCAACACAAGTTTGCCAGTAATGTGGTGGAGAAGTGTGTGAGCCATGCGTCGCGTGCAGAGCGGGCCGTGTTGATAGACGAGGTGTGTAGCCTGACGGAGGGGCCCCACAGCGCCTTGTACACCATGATGAAGGACCAGTACGCCAACTATGTGGTTCAGAAGATGATTGACGTGGCTGAACCAACACAGAGGAAGATCGTAATGCACAAGaTCCGGCCCCACATCTCCACTCTGAGGAAGTATACGTATGGCAAACACATCCTGGCTAAGCTGGAGAAATACTACATGAAGAATGGAGTGGACCTGGGCCCTCTCTGTGGCCCTCCCAATGGCATCATGTAAACTAACAACCCTTACACCCTAACCCTTAAGTACAAGACGGACCAACATGTACGTCAGCCGTGTGCAGTAGATCACCTGCTGTGTGTTGGAGGAACGGTGGCCATTCAACATAAAGGCCGACCACCCTCTCTCTGTGCACAGCTGACGTTGTATTGGAATGTCTTGTCTTCTGTACCATAACCCCTGGCCTATACCCTACATGAAGAACGGAGTGGCCCGCCTAGTGGCATCGTGTAAACTACTATCAATATATACCCCATTATTCCCGACACCCGTAACCctatatatacacccccccctcccctttatTCCCCTCCTAATGAGATCATGTAAACTACTATCCTACCCCCCAATTACATCATGTAGAACCCTCTTTAAATACTCCAACCGTCCCGCTCACTCTTACCCCTATGGTAGCCCATTGGGAGGGGCCTGTCTAAACAGGAAGCCTTGGTTAATTTAGCCCCTCCCCCAACCCAAGCATCCCACTCCTTCATTCATTCtcccttttttttttctttattcgTCTTTTAAATAAATTAGAATCATTTAACTTTGTTGCTACTGCTGCGGCGCACACACTGTCCCATCGCAAGTATGGGATGGAACAAACGTATTTAATTTGTCTGACGGCGTCACCAACTccaacacacactgtacacaaacagacacgcacaccacacacacatgctacaCACGCACGCCATGAGCTTACCAGCACACAGATCATTTAGCATGGGAGATTCGTTTCCGGTCTTGCTTCTATATATAGCGTGTATACTTGGTGTAGAcctttgcatatatatatatataaatatatatataaaactttgTAGTTTTTCTGGTTTTTGATGTTGAATCTGTATCTATAATGTATCCTAGTAGTGAACACATATTTCTGACTGTATAATTGTACATTTGTAAACCCTTGTAATGTAAAAGTGATTTACCACCCTTTTTGGTATCAGACGATATAAAAGAAAAAAACTCACACAAAAAACTAAAATCTTAGAAAAACTATTGTGCATTTCAGTGTATATTCTCACCTCCTTGGTTGTGACATATAAGTTGTTGTATATTGTAAATTGTAATATCAAATTTTTGTTTTGAAAAGCCCTTTCTATACTGCGTAGTACTTGTACAaagcccccccccaccaccaccaccatctcgtTTGACCTTCCACTCACTGCTTCAATAGAATTCACTTCCCCAGCCCCTGAACTACACCACCTCCCCAACCCCCAAACTACACTGCAAACGTGGCTTGTCCGTTTACTAAACATCCGTTACCCACAGCAAATCCACTGAAATCAACGAGACAAGTCTTTTTACAATTCAAGTCTATTTAAAACGCAGAGAGACCTGGCTGAAGTGTAAATGACTGATAAAGTGGTTTCCCCCTTCTGGTGTAGCAGTCCAAAAACATTACACTTCCGGAACACGCAAAGCGTTTGCGGTGTAGTTTGGGGATtgttaccaccaccacaggacacACTGTTAGTAGTAGTAATTTCTGCTTTAACATGAAGCTGTATTTGTTTTTTAGATCTTTTATAGGAATTCTGAGGGAAGGGGGTGAGGGGCCATGAGTTTAAAGGTAGACGCCGTGATATGACATCGTACACAACGGAGCGACTTCCTGCTTGCAGACATCCACAACAACCTATTTCAAATCTGCCAACACTACCCACTATTGGCTCATCTTGAGGCATGATATATGAAAGGTGTTGTTACTTACGTCTCGAAGAAGGAAGTAGCTCTACGGTGTACTGTCATCGCTGAGTCTACCTCGAACCCcaatctcccccctcctctctcagggGGGTAAAGTGAAACCATGGATTGTACAGAAAAGAGGAGAGtggtgtgtttgttttttttgacCTATATTAGTCCTGTAAAAGTGATGTATCATATCATATGTCCATGTCCCCCGGGAAAAGACCGGGCGTCGCCTGTCTTGCCCTCTGTAACCATGATTACCGCTGTGGCAGACGGCAGCGACACGGTGTACATTTGGGGCAGCGAGCCTTGTGTATATGAATAGGAGCACCACCTGTAACCATAatgtgtatagttataacagaaACCTGTGTATGTTTATTGCCTGGGCAACTATTTTTTGTAACTCCTGTTGTAGATTGTCTCTAAACAATGATGTGAGTCTTTATTTTGAAACAAAACTGAACAAAAAAACACTCAAAATTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1786205 lncRNA downstream 101682 52411530 ~ 52413003 (-) True G1561306
TU1786203 lncRNA downstream 102305 52411046 ~ 52412380 (-) True G1561305
TU1786138 lncRNA downstream 118090 52360300 ~ 52396595 (-) True LOC110496491
TU1786139 lncRNA downstream 156773 52357494 ~ 52357912 (-) False LOC110496491
TU1786136 lncRNA downstream 158854 52355342 ~ 52355831 (-) False LOC110496491
TU1786186 lncRNA upstream 57477 52609103 ~ 52612099 (-) True G1561290
TU1786267 lncRNA upstream 81055 52632681 ~ 52635148 (-) False G1561366
TU1786268 lncRNA upstream 81055 52632681 ~ 52633827 (-) True G1561366
TU1786269 lncRNA upstream 81862 52633488 ~ 52634262 (-) True G1561367
TU1786181 lncRNA upstream 88691 52640317 ~ 52641070 (-) True G1561285
XM_036953139.1 mRNA downstream 3043 52473210 ~ 52511642 (-) True LOC118941185
XM_021572429.2 mRNA downstream 42608 52462369 ~ 52472077 (-) True LOC110496494
XM_036953136.1 mRNA downstream 43338 52462369 ~ 52471347 (-) False LOC110496494
XM_036953151.1 mRNA upstream 842 52552468 ~ 52557653 (-) True nkain1
XM_036953145.1 mRNA upstream 7014 52558640 ~ 52561317 (-) False snrnp40
XM_036953146.1 mRNA upstream 7014 52558640 ~ 52563670 (-) False snrnp40
XM_036953147.1 mRNA upstream 7014 52558640 ~ 52563739 (-) True snrnp40
NM_001124713.1 mRNA upstream 19706 52571332 ~ 52575201 (-) True fabp3
TU1786137 other downstream 157375 52356752 ~ 52357310 (-) False LOC110496491
TU1786055 other downstream 264196 52249354 ~ 52250489 (-) True G1561167
TU1786046 other downstream 331478 52179320 ~ 52183207 (-) True trak1b
TU1785112 other downstream 1059400 51382672 ~ 51455285 (-) False G1560339
TU1785000 other downstream 1300541 51213155 ~ 51214144 (-) True LOC110496463
TU1786175 other upstream 93363 52644989 ~ 52647777 (-) True G1561279
TU1788031 other upstream 1047024 53598650 ~ 53602694 (-) True G1562762
TU1787983 other upstream 1070274 53621900 ~ 53628422 (-) False tomm7
TU1788090 other upstream 1200780 53752406 ~ 53752683 (-) True G1562816
TU1788103 other upstream 1322784 53874410 ~ 53875592 (-) True G1562828

Expression Profile