RNA id: XM_036953162.1


Basic Information

Item Value
RNA id XM_036953162.1
length 2605
RNA type mRNA
GC content 0.53
exon number 19
gene id arpp21
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52649871 ~ 52672721 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCTCACTCGCCGATGTCACCAAATGGAGTCAAGCTAGCCACAAGTTCTGACAGCTCAATCGTCATGAAACGCAAATACAGcgatgagtttctctctcttgGTACAAACTTTGAGATATAACGAGGTGCAcccacaatgtgttttgtgcggggaagtgcttagtaatgagtctctcaaaacaaacaaattaaaaACGACAGgtcctgaccaaacatccacagcatgaCAGTAAAACCCAGGGAGTTCTTTCAGAGCAGGACTGAATGCTTCAGGTAACAGTGCCTCGACAGTGGAAAAttttcAGAGAGGATGTCTGAAGCGATCGTCCCAGAATCCTCAGGGCTGAGGTCATGTAACGAGTTATGCCCCTCCGCTCTGCCATCCTCACCCCCCCTTGCCACAGAGGATGAGTGTCACCATGACAACAGAAAGGTGGAGCAGCAGAAACCCGTCAGTAACCAGGGGCAACCAGCCAGGAAGAGAACCAAGGCCAAAGGCAGGTTGGTGAGGAGCATGGCTGTGTGTGAGGAGTCATTCCCACCATCCCCTCCTGACACCACCCAAGAcagccagAGCTCTGTTGAAGTCACCATGCTGCCAGGTTGCCATGACAACGATGAGGAAGAGCAGAGCAAAGAGCCAAATGTGCCCACGCTAATTATCTCAGACACCAGTCAGGAATACACAGACTCTACTGGGATTGACCTGCACCAGTTTATCATCACCACCCTGAACAGCAATCCCAGGGACAGGATGATgctgttgaaactggagcaggacATGATCGACTTCATCACAGACAacggtcctTATAAGAAATTCCCTCACATGTCTTCCTACCATCGTATGTTGGTCCACCGGGTAGCAGCCTACTTTGGCATGGAACACAATGTGGACCAGACTGGCAAATCTGTCATCATCAATAGCACCAGTAACACACGCATACCAGAGCAGAGGTTTATGGACTATgtccaggaggagagaggagaggagactcagtggagAACCATACTGAAGAGAGACAACGCAGAAGACAACCAGGCGAGGCTCCACCCACTACGCGAGGAGAGGCGGAGCAAAtcaatggaagagagagaggaggagtaccAGAGAGCTAGAGAAAGGATATTCAACCAGGAGCCTGCCTGTCCCCAGGAGACCAGGTCTATAGAGGATGGTAGCCCCCATGCTGCGACTCAGAGAAGGCAGCTCTTTAGGGGTACCAGGGGTAACTCGGGCTCAAGCCGACAGAGCAGCACGGAGACTGACTATAGTCGCTATAGTAACTGGAGCAGCACTGACTCAGGTCGCTATAGCAACGACCCCCGACCCTGGAGCAGCACAGACTCAGACTCTGCCTATCAGAGGCCCGCCCCCAAGGCCCGACCAGCCAATCACAGCTGGGACGCACGAGatgaccatgcccccaccacaggCTCCAACTACCTCACGGTGCCCATGGAGAACGGGATTCCACCAGGAAGTATATTACTGAACCCacatacagGCCAGCCCTTCTTGAACCCAGACGGAAGTCCTGCCATCTACAACCCCCCCGACCCCCAGCAGCCAACAAGAAGCCAGCCTCAGCAGCAGGCCCCTCTGCCGCAGCAGCCAATGGCTGGCCACACAGTCCCTCAGGTGGTTCAATATTCGTCCGTCTCTTATCCTCCCCAGCAGTTGCAATACTCTACGAGCGAGGACCTGTCGTCTCAGTTTGGTCACATTACTGTGAGCTGTCAGCCATTGGGGGAAGCTCCGTCTCTATACCCTCCCTTGGCCTCTCCCACACAGAGTTATGTCTATAccgcccctccccctcctcacaaCCCCCCCAGCTACTGCCAACCCCCTCCAACTCAGGTGCCTGTGtattactactctactactcagTATCCTACCTCAGCACCCCAAAGACCTGCCACACCTACCCAGGCCATACAGCCTACAgGTTACTCTCCTGTCGTAGCCAATCAGCAGCAGACCTACCAGGGGATGATGAGTTTGCAGCTGCCTCAGAACCAAGCCCAAAGATTGCTGGGTTCTTATCCACCTGGCTCCTCCCACCCATGTGGTGTAACACAGGGTGGTGTGGGGGTATCGTATCCCCAGACTGGTCTCATGTCGCGGGGTGAGGGGGGTTACTGCTGCATGGTATCTCCAACCTGTCCCCCTGGTCCcataccccctccccctctacaCACCGGCTGCCATGCCTCCAGCTGTAGCAACATCAGCAGCCAGGGGTGGGCGGGAAAATACTAACAcgaccccacacatacacacgcccCCACCCAAACTAAACTTACAtaacccccacacatacacacacttgacCTCCCTTCCCCCCCACCTCTACTTGCACAACCCCACCGGACTGTGTTGATTGAGATGCAACCAGTGTTCaagctgtcacacacacagtataccaCAGGCAATGTATTGTGCCAAAGCTGTATCAGAGGTACTGTACTGATTTAAAAGCATCATTTATATACTCCAGTTGAGTTTTGTATGGATATGAAATGATTATATATATGTATTGTAGTGTTTGAGCAGAATAAACTGATGTGGCTGCTTTGACAGGGCACCTTTCTAACGGC

Function

GO: NA

KEGG:

id description
K02360 ENC; a component of the cytoplasm (encore)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1786270 lncRNA downstream 872 52648741 ~ 52648999 (-) True G1561368
TU1786181 lncRNA downstream 8801 52640317 ~ 52641070 (-) True G1561285
TU1786267 lncRNA downstream 14723 52632681 ~ 52635148 (-) False G1561366
TU1786280 lncRNA upstream 2229 52674950 ~ 52675170 (-) True G1561378
TU1786184 lncRNA upstream 3028 52675749 ~ 52740009 (-) True G1561288
TU1786309 lncRNA upstream 106661 52779382 ~ 52779744 (-) True G1561396
TU1787615 lncRNA upstream 154329 52827050 ~ 52831250 (-) False G1562427
TU1787610 lncRNA upstream 154776 52827497 ~ 52830354 (-) True G1562427
XM_036953157.1 mRNA downstream 12136 52607328 ~ 52637735 (-) True arhgap4b
XM_036953155.1 mRNA downstream 12141 52606702 ~ 52637730 (-) False arhgap4b
XM_036953154.1 mRNA downstream 12142 52606702 ~ 52637729 (-) False arhgap4b
XM_036953156.1 mRNA downstream 12143 52606702 ~ 52637728 (-) False arhgap4b
NM_001124713.1 mRNA downstream 74670 52571332 ~ 52575201 (-) True fabp3
XM_021572437.2 mRNA upstream 4700 52677421 ~ 52704871 (-) False LOC110496501
XM_021572438.2 mRNA upstream 4700 52677421 ~ 52704871 (-) False LOC110496501
XM_021572439.2 mRNA upstream 4700 52677421 ~ 52704871 (-) True LOC110496501
XM_036953164.1 mRNA upstream 39832 52712553 ~ 52728674 (-) False ubp1
XM_036953163.1 mRNA upstream 39832 52712553 ~ 52728916 (-) False ubp1
TU1786175 other downstream 2094 52644989 ~ 52647777 (-) True G1561279
TU1786137 other downstream 292561 52356752 ~ 52357310 (-) False LOC110496491
TU1786055 other downstream 399382 52249354 ~ 52250489 (-) True G1561167
TU1786046 other downstream 466664 52179320 ~ 52183207 (-) True trak1b
TU1785112 other downstream 1194586 51382672 ~ 51455285 (-) False G1560339
TU1788031 other upstream 925929 53598650 ~ 53602694 (-) True G1562762
TU1787983 other upstream 949179 53621900 ~ 53628422 (-) False tomm7
TU1788090 other upstream 1079685 53752406 ~ 53752683 (-) True G1562816
TU1788103 other upstream 1201689 53874410 ~ 53875592 (-) True G1562828
TU1788095 other upstream 1216988 53889709 ~ 53894949 (-) True mrpl3

Expression Profile