RNA id: XM_036953214.1


Basic Information

Item Value
RNA id XM_036953214.1
length 6878
RNA type mRNA
GC content 0.53
exon number 43
gene id clasp2
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 52731509 ~ 52824972 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCTCCTACTAGTCAACTGCAGTCACCGGCTTGGCGCTGGCTTTCAGCGGGGGAGGGTTTAGCTAGACAGTTTAGCAGGGGCGATTATTCCCGGATTAAAAGTAGGCAGGAACTGTGGGAGGAAGGCTGAAACACTGTTCTCGAAGTTTTGGCGCAACTTTATTTTCAAGGGTTCGACAACACCTCCCTGGAGAGGTTTTTCCAACTCATGGAATACATAAATGAAGCGAAAATAGGCGTCAGGCCTGTGACCAACTAGCTAACTGTTAGTTTAGCTAACGTTGCTTTCCACATATCTCGCTATCCACTAGGTGTTGCCACCGTGCGTGACTAACTTCGTTAGCTTAGCTACTAGTAGCTTTATTGTGTTGTGGATTGATACAGGCCCGGTTAGTTTTACTGCAAATGTGTCTTATTTTTCAAAACTTTTAGAAAGTTATTGCTAACTAGTTATCTGAGAGCAACATTCTCTATCCTTCGCTGAAATCAAAGTTGAGCAGTGTGTGTTTTGGACAAAGTGATTGCGCTAGCCAAGCAAATTTGACAggcgtttgttttgttgttgatcAAACGTAAAATAGCGGTCACCCAAGCGTCCAGGCAGCTGTCATTCGCTCAGAAGAAAGGGACCACCGACCGGAGCGAACCTTTTTCCACACCCAACCCGCCAGGACACCCTGTAGTCTGCGGCTGGCCCCAGAAGGAGCTGGCCACACGGCACTGCCTGCCCAATGGAGGAACATGACAACATGGATTATTTTTACCAGCAGGTCCTGCAGAAAGACGTTACCCGCAGGCTGCAGGTCGGGCAGGACCTCATAGACTACCTGAACGACCCGCAGAGGTCCACCGATGTGGAGCAAGACAAACCACGGCTGGATAAAACTGTAGATGAGCTGACGGGATGGGTCAACTCCAGCAACTACAAGGTGGCGTTGTTGGGGATAGACATTGCCGGGGCGTTTGTCGATCGCTTGGGGGAGCGCTTCAGAGGATACCTGGGGACAGTGGTCCCTGCGTTAGTGGACCGGTTGGGGGACAGTAAGGACCAGGTCAGAGAACAGAGTCAGACGGTCATCCTCCGCTGTATGGAAGTCACAGCATCGCCTATGtaTGTGTGGGAGAGGTTGCTTCCTGGTTTTAAACATAAGAATTTCCGCAGCAGAGAGGGCGTGTGTCTGGTTCTCTGCGCCACCCTCAACACGTATGGTGCTCAGCCTTTGAGTCTCAGTAAGATCGTTCCGTACCTCTGCACTCTGACAGGAGATCAGAACCCACAGGTGCGTGAGGCTGCCACAGCATCACTGGTGGATGTGTATCGCCACataggagagagagtcagagccgACCTTGGAAAGAGAGGCCTGCCTGCCACACGGTTACAGACAATATACGGACGTTTTGATGAAGCGTTGAATTCTGGGAACATGGCGCTCAGCCCCAGTCACGTCTCACAGATTTCTATCGTATTGCGTCCATCTCCGAAAAGAAGACAACCAAGGAGAATCATCCTTCGTCATAaccataGTTTTGAGGATGACGTGGACAGTACAGATGGGAGCCGTGCTCAGGCTGCCTTCAAAGTCCCCAAAATCCCCAAGAAGCCGGCCGAGTCCTCTACCGCACGCAGACCCAGCGCTACAGGACCCAAGATCGGAGGTGCGTCCAAGGATGGAGCTGGGGGCATCGATGAGGAAGACTTCATCAAAGCCTTCACTGACGTCCCCACagtacagATCTACTCGTCTCGTGACCTGGAGGATAACCTGAATAAGATCAGAGAGATCTGTTCTGATGACAAACATGACTGGGACCAGAGAGCTGCTGCAATGAAGAAGATCCGCTCGCTGATTGTTGCCGGGGCAACGGAGTACGAGTGTTTCTTCCAACACCTGAGGCTGTTGGACGGAGCGTTCAAATTGTCAGCTAAAGACCTCCGATCACAGGTGGTACGAGAGGCCTGCATCACTGTGGCccaCCTGTCGACAGTGTTGGGTAATAAGTTTGACCATGGTGCTGAGGGCATTCTTCCTGTCCTGTTCAACCTCATCCCTAACTGTGCCAAGGTTATGGCCACTTCAGGGGTGTCTGCTATACGCTTCATCATACGGcaCACACATGTTCCCAGACTCATTCCCCTGATCACCAGTAACTGCACCTGCAAGTCTGTGGCCGTCAGAAGGAAATGTTTTGACTTCTTGGAcctgctgctgcaggagtggCAGACCCAGACTCTGGAGAGacataCAGCAGTGATGGTAGCGAGCATTAAGAAGGGGATTGCAGATGCCGACGCAGAGGCCAGAGTAGAGGCCCGcaaggcgTACTGGGGTCTGAGGAACCATTTTCCGGGAGAGGCGGACTCTCTGTTCAACTCGTTAGAACCGTCCTATCAGAGGAGCCTCCAGTCGTCTCTCAGGAATGCCGGGAGCGTGGCGTCTCTTCCTCAGAGTGACcgctcctcttcctcttcacagGAGAGCCTCAAtCGTCCTCTGTCGTCTAAATGGTCAGCTGCTCCTGGTAGAgtcCCGGCTGGTCATAAGGGCGGGGCGTCGCCAGGCTCCCTGCAGCGTTCCCGTAGCGATGTGGATGTTAATGCAGCAACGGTTGCTAAGCAGCGGCACATCGGGCAGGTGGGGGCGGGGAGACTGACCCCCGGTTCCTACTCGTCATTGGATGATGCCTCTGATAAAATGGATGGGGCCAGGTCAGTCAATGgTCGTCTGAGGACCAAGCAGCCTCTCACCACGGTGACCAGCGTCAGCCAGGTGGACTCCCGGGGACGCACCCGCACCAAGATGGTGTCCCAGTCACAACGATCTCAGTCTGCTACCCCCATTGGTGCCGGCAGTCGGAGTGGTTCTCCGGGTCGCGTCCTGACCAGTACCGCTCTGAGTACTCTGGGTTCTGGAGCCCAGAGGGTCCTAGCTGGGGCTGGAGGGAGACGTAGCCGCATCCCCCGCAGCCAGGGCTGCTCACGAGACTCCTCCCCTACACGCCTGTCTGTCGCTCCCTCCAGTATTAGTTCCATCTACAACGGCGCAAGCAGAGGAGCTCGGGGCAGTCGTATCCCCCGGCCCAGTATGAGTCAGGGCTGCAGCAGGGAGGCCagcagagagagcagcagagacacCAGCCCTGTACGCTCCTTTACACCCCTGGCGTCGCGGCACTACTCTCGCTCCACTGGAGCTCTCCATACCGCCGATGCTTTAGGGGCCGCAGggTCAGGGTACAGTATCAGTCAGTCCAGTCGTCTGTCCTCATCCGTCAGCGCCATGAGAATCCTCAACACAGGATCTGATGTAGAAGAGGCCCTCGCTGATGCCctgCTGTTGGGAGACATGAGATCCAAGAAGAAGCCAGCGCGGCGGCGCTATGAGAACTATGGGATGTATTCGGATGATGATGCTAACAGTGATGCGTCCAGCGCCTGCTCAGAGCGCTCCTACAGCTCCAGGAATGGAGGAGCCATCCCAACGTACATGAGACAGACTGAGGACGTGGCCGAGGTGTTGAACCGCTGTGCCAGTGCCAACTGgtcggagaggaaggagggactGCTGGGTCTACAGGCTCTACTGAAGAACCAACGCACCCTCAGTCGTGTGGAGTTGAAGAGGTTGTGCGAGATCTTCACCAGAATGTTTGCAGACCCCCATAGTAAGGTGTTCAGTATGTTCTTAGAGACCCTAGTGGACTTTGTCCTGGTGCACAGAGAAGACCTGCAGGACTGGCTGTTCGTCCTGCTCACCCAGCTGCTGAAGAAGATGGGAGCTGACCTGCTGGGATCAGTACAGGCCAAGGTCCAGAGAGCACTGGACATCACACGAGAGTCTTTCCCCAACGACCTCCAGTTCACTATCCTCATGAGGTTCACTGTGGACCAGACTCAGACACCAAACCTCAAgGTGAAGGTGGCTGTTCTGAAGTACATTGAGACCTTGACCCTGCAGATGGAGCCGCAGGACTTTGTGAACTCCAGTGAGACGCGCCTGGCTGTGTCTCGCATCATCACCTGGACCACAGAGCCAAAGAGCTCCGACGTCAGGAAGGCTGCCCAGTCGGTGTTGATCTCGTTGTTTCAGTTGAACACTCCAGAGTTCACCATGCTGCTGGCAGCTCTGCCCAAGACCTTCCAGGATGGCGCCACCAAACTGCTACAGAACCACCTGAGGAACACAGGCAATGCTGCACAGGCCCCGACAGGAAGCCCTCTTACACGCCACACCCCCCGCTCTCCTGCCAGCTGGTCcagccccctcacctctcctaccAATACATCACAGAACACATCCTCACCCAGTGCATTTGACTACGACACAGAGAACATGAACTCAGAGGACATCTACAGTAGTCTGAGAGGAGTTACAGAGGCCATCCAGAACTTCTCCGTCCGTAGCCAGGAAGACATGAACGAACCGGTCagacggagggaaggagaggagggTGGTAGTGCTGGTGCTGACCAGGTGGATGGAGGTCGTACAGCTCTGGACAACAAGACGTCTCTCCTCAACACccccctgctctcctcttctccccggGGGTCCCGTGACCCCTTCACTGACTCCCCCTTCAAACACAGCGTCATAGATACTTCACTAGACGAATCAGACCAGCAAACTGacgACAGCAGCATTGACCAATCAGAGCTGGTGTCTGAGCTGCTGAAGGAGCTGTCCAATCACAATGAGcgtgtggaggagaggaaggcagCGCTTTGTGAGCTCTTGAAGCTGATTCGAGAAAACACCCTGCAGGTCTCCTGGGATGAACACTTCAAAACCATCCTCCTGTTACTACTGGAGACGCTGGGGGacagagagCATGTGATCAGGGCGTTAGCTCTGCGTGTTCTGAGGGAGATTCTGAGCCGCCAGCCCTGGAGGTTTAAGAACTATGCTGAACTCACCATCATGAAGGCCCTGGAGGCGCACAAGGACCCACACAAAGagGTGGTGCGAGCGGCAGAGGAGACTGCAGCCATGCTGGCGTCGTCCATCAGTCCAGACCAGTGTATCAAGGTGTTGTGTCCCATCATCCAGTCAGCTGACTACCCCATCAACCTGGCTGCCATCAAGATGCAGACTAAAGTTATAGAGAGGGTCCCCCATGAAGGACTAGTGAGCATGCTGCCTGAGATAGTCCCCGGACtcatacagGGTTATGACAACTCTGAGAGCAGTGTGAGGAAGGCCTGTGTATTCTGTCTGGTGGCTCTCTACGCAGTCATAGGGGAGGAGCTAAAACCTCACCTCAACCAACTGTCTGGCAGCAAAttgaaGTTGTTGAATCTGTACATCAAGCGTGCCCAGTCCGGCTCCAGTGGTGGTGAGCCCCCAGCAGACAGCCTATAGAACAGATGAACAGCCCACGGGACAACTATGGAGCTGCACTCTCCCTCTGGAGACTTAACACGGACACACAAGGACACACTCTTACATGGATGCACAAACACATACATGCTTACATGAACACACATGTGCACTTACTTACACGCTTACATGAACACACATACGCTTACATCTGCTTACACATAAACATGCTGATAAGaaggctctgacacacacacactgtcctggaccccccccccccccctctcctgttACCTCCAAGTCGCCTACTGCAGGGCACTCTGCAATGCACTCTGGGAAGAGAGGAGTGTTGTAGTTCCCTTCACTGACGTTGAAGATCCAACCTGCTCTCTGAGATTCACCCCTGACGTCGACACACCTCGCCCTCTGACCCCGATCTCACTCTGAAGCCTCAATGCTAACGGTTTTAACTTTGGTTTAACTTCCTGGTTTTAGTAGAATAGGGGAGGGGCCGGAACAGCAGCATGATGTAGCCACACCCCAGGCAAGATAAACAgatagagggagggtagaggagcaTGTATGTGTGTGATAGGGGGGTGTATATCTGTGGTCAGTCAGCCTGTCCATCATAGTGGTTGAGTGGGTTTTAGCCGCTGAAACTGAAGGcaaatctgaaatggcaccctaatccctacgtagtggactacttttggccagagctaCATAGTGCCACTGCATACGGCTCTGGTCAaactatagggagtagggtgcaatTTTGTCTCAAAGCATTCTCTGTCCGTCGAATGGTGCTAGTTCCACCCTGTGGCAGTGGGAACATGGTAGGACCTTCCCTGCACAGCACTAATGCTCATAAGCAGGTCACAGTAGATCATAACTGCTCTTAGCAGCTACGTAGGCAGTGAGTGTGAGGTATAGGAGGCATAATGTGCTTGGCTATGCATGACGATGATTTTAACAAGATCTTTTTATCCGGAGCCTATTAACTGTCACAGTAGAAGGGAGGGGGTGAAATTAAAGTTAATGATGTCCACCCCTTTCAGAGGAGTCCATGGTACCTTCCACTGCTCCCCGCCATGTCTTGGATGAGCTCAtttcagacagaaagagagggagaggcttaTATACATCAAACTATgaccagacatggcttattattattaatattattatcacCTAGTGGATATGTAACTATACATGatattataaaaaaatgtaataatatcCGATAACAACGTCATTTAGGAGAGTCCCTGAAGGACGTGTGCGCTCTGCATCCTGATCTATTTTATTTTCTGTTGCGCGTTCCGTAGTCTCTCTCACGTTAGTTTCCCCACCGGGGAGACATGTATTATTTACTGATCAGAAACTGTCGAGTCACCTTTCgccccctccttctcttctttttcctttcctctcttctgctCCCTCTTCTTGTGACATTCTAGTCTTCACTGTGTTTCCCTCAGTGCATTTACAAAGCTGTGCTTAcaataaaatgaaaaataaagaaaacttgTACAGACCATAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1786280 lncRNA downstream 56339 52674950 ~ 52675170 (-) True G1561378
TU1786277 lncRNA downstream 59428 52671757 ~ 52672081 (-) True G1561375
TU1786271 lncRNA downstream 75367 52654774 ~ 52656142 (-) True G1561369
TU1786270 lncRNA downstream 82510 52648741 ~ 52648999 (-) True G1561368
TU1786181 lncRNA downstream 90439 52640317 ~ 52641070 (-) True G1561285
TU1787615 lncRNA upstream 2085 52827050 ~ 52831250 (-) False G1562427
TU1787610 lncRNA upstream 2532 52827497 ~ 52830354 (-) True G1562427
TU1787669 lncRNA upstream 81727 52906692 ~ 52918374 (-) True G1562451
TU1787653 lncRNA upstream 171691 52996656 ~ 53051278 (-) False G1562450
TU1787664 lncRNA upstream 179452 53004417 ~ 53084936 (-) False G1562450
XM_036953163.1 mRNA downstream 2593 52712553 ~ 52728916 (-) False ubp1
XM_036953165.1 mRNA downstream 2593 52712553 ~ 52728916 (-) True ubp1
XM_036953164.1 mRNA downstream 2835 52712553 ~ 52728674 (-) False ubp1
XM_021572438.2 mRNA downstream 26638 52677421 ~ 52704871 (-) False LOC110496501
XM_021572442.2 mRNA upstream 13299 52838264 ~ 52858740 (-) False fbxl2
XM_021572443.2 mRNA upstream 13299 52838264 ~ 52858741 (-) True fbxl2
XM_036953228.1 mRNA upstream 75706 52900671 ~ 52905814 (-) True LOC110496507
XM_036953216.1 mRNA upstream 93719 52918684 ~ 53013656 (-) False LOC110496850
XM_036953218.1 mRNA upstream 93719 52918684 ~ 53013656 (-) False LOC110496850
TU1786175 other downstream 83732 52644989 ~ 52647777 (-) True G1561279
TU1786137 other downstream 374199 52356752 ~ 52357310 (-) False LOC110496491
TU1786055 other downstream 481020 52249354 ~ 52250489 (-) True G1561167
TU1786046 other downstream 548302 52179320 ~ 52183207 (-) True trak1b
TU1785112 other downstream 1276224 51382672 ~ 51455285 (-) False G1560339
TU1788031 other upstream 773685 53598650 ~ 53602694 (-) True G1562762
TU1787983 other upstream 796935 53621900 ~ 53628422 (-) False tomm7
TU1788090 other upstream 927441 53752406 ~ 53752683 (-) True G1562816
TU1788103 other upstream 1049445 53874410 ~ 53875592 (-) True G1562828
TU1788095 other upstream 1064744 53889709 ~ 53894949 (-) True mrpl3

Expression Profile