RNA id: XM_021572471.2


Basic Information

Item Value
RNA id XM_021572471.2
length 3525
RNA type mRNA
GC content 0.50
exon number 26
gene id snx13
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53357729 ~ 53385541 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATACGATGAGCTGAAGTTATCCTTGGTGACAATACCGTGCTGGAATAAGCTCTCTGGCTAGGTGGAATAACCAACGTTATGCGTTTACATTATTATGAGTAACGACGTTGCTAACAGGAGAATCTCTTCAGCTCAACTGATTCAGgccagtctgtctgtgtggggaTGGGGGGGTCTAGGAGTGGTGCTGTTCCTCATCACTTTTGGACCCTTCGCTATCTTCTACCTGGCCTTCTATATCTGCTGCGTTGTAGGCGGtggtTTTGCGGTCACTCTGTTGTTTGGGAAGACCAACTCAGAGAGACATCTTGAGAAGTGTGAGCACTCCTACCTGCCAGCCACGCAAACGGGTATACTGAAGaCGTTGGATGAGATGAGGTTGGAGCAGAAGCCTATAAAGATAGACAGGAGACTGACTGGCTCCAACTACATAGACGAGCCTCTGCAACAGgtcATCCAGTTTGCATTGAGAGATTATATTCAGTATTGGTATTACACTCTGAGTGAGGATGAGTCTTTCCTGCTGGAAATCAGACAGACTGTCCAGAACGCTTTGGTCCAGTTCTCTACACGGTCTAAAGAGGTGGACTGGCAGCCTTATTTCACCACCAGACTGGTGGATGACTTCGCTACTCACCTCCGAGTCTTCAGAAAGGCCCAGGACAGACTGGAGCGCAGGGATGACAATAAACAGAGGGACTTGTCGGAGGAGATGGTGGAGTCATTCTTTGAGgcggaggtagagatggagaggagcgTCTGCAGAGACGTGGTCTGCACCTCCCTGAAGGATGAAgaaggGTTCCTGAGGGACTTGTGTGAGGTGCTGCTCTACCTTTTACTACCTCCTGGAGACTTCCACAACAAGAACATGAGATACTTCCTCAGgGAGATTCTGGCGCGAGGCGTTCTCCTTCCTCTGGTCAACCAGCTGAGTGATCCTGATTACATCAACCAGTTTGTTATCTGGATGatcCGGGACTCTAGCTGTAACTACGAGGCGTTTATGAACATCTTGAAGCTGACAGACAAAGTGTCTGAGCTGGAGGCTGTTAAAGACAAGGCCCTGGAGGAACTACAGTACCTACGATCACTGGACACCGCAGGagatgataTCAATGTTATAAAGAATCAGATCAACAGTCTGTTGTTTGTGAAGAAGGTCTGTGAGACCAGGATACAGAGGCTACAGTCAGGGAAGGAAGTGGATACTCTAAAACTAGCAGCTAATTTCGACAAGCTGTGCATCATACCACTGGAACACATCCTTGTTCACAACATCGCCTTGCAATTCTTTATGGACTACATGCAGGCGGCTGGGGCCCAGGCAGAGCTGTTCTTCTGGCTGACAGTGGAGGGCTACAGAGTAACAGCCCAGCAACAACTAGAGGTGATGGAGGGATGGCAGAAGGATGGAAAGAAGGGAGGTTCCACTCAAGGACTGCTGAAGGCTGCAGCATTAGGGGTCTATGAACAGTACCTGTCTGATAAGgcgtcCCCCAGGGTGCAAGTAGATGAGGTGTCTGTAGTCAAACTAAGAGAGAAGCTACAGAAGGAAGGAGACCCCACGCCAGAGATATTCGACGAGATCCAGAGAAAAgtgtATGACATGATGCTTCGTGATGAGAGGTACTACCCGTCGTTCAGACAGAGTCCCCTCTACATCAGGATGTTAGCTGAACTGGACATGCTCAAAGAACCGTCTTATAGAGGATCAGATGACGGAGATGGAGaATCGTTCAACGGTTCTCCAACAGGAAGCATTAATCTATCCCTGGATGACCTTTCGAATTCCTGCCATGACGACAATATACAGCTACACGCCTTCATCTCTgacacagGGGTGTGTAATGACCACGGCAAGACCTACGCCCTCTACGCCATCACCGTGTGCCGCCGTAACCACGACGGCAGCGAGGACTCCTGGAAAACCTACCGCCGCTACTCCGACTTCCACGACTTCCACATGAGGATCACGGAGCAGGTAAAGTTTGAGAACTTGATGTCGATCCTGAAGCTGCCAGGGAAGAAGACGTTCAACAACATGGACAGAGACTTCCTGGAGAAGAGGAAAAAAGATCTCAACGCATACCTACAGctGCTGCTGAATCCAGAGATGATGAAGGCCTATCCTACTCTGGTTCACTATGTCTATGACTTCCTGGAGAATAAGCAATACAGCAAGGGCAAGGGAGACTTCGCAcgcaagATGGATACGTTTGTGAACCCACTGCGTAGCTCGATGCGTAACGTGTCCAACGCAGTGAAGAGACTACCAGATAGTCTGGCTGAAGGGATGAACACTGCTGCTGATAACATGGGACGCATGTCAGAGAAACTGGGCCAGGACATCAAACAGTCCATGTTCAAGGTGCCTCCACTGCTCCCCAAGTCTAACGTTGACCCAGAGCACTGCCGAGTCTCAGCCCAGCTGGACGACAACGTGTGTGTTTTCCAGGTGGATGATAACATCCCCCTGCGTGTGATGCTGCTGCTGATGGATGAGGTGTTTGACCTGAAGGAGAGGAACCAGTGGCTTCGCAGGAACATCAAGAACCTTCTGCAGCAACTCATCAGAGCCACATACGGAGACACTATCAAcagGAAGATCGTTGATCATGTGGACTTCATGACAGCTCCAGAACAGGTGGCAGACTACGTCAAGAAGTTCAgGGATTCATACTGGCCCAACGGAATCCTAGCAGAGTCTCCACCCCGCCGGGACAAGAACATCCGCATGAGGACACGGGTCGCCGCCAAGACCAACCTATTGGGAATCATGCCAGaTGAGTTGAAGCACATCATAGGGGCGGATACGACTCGTAAAGGCATCCTTCGTGTGTTTGACATGTTCCAACACGGACCAATGAATCGTCGGCTGGTCTACGTGCTCCTAGAAGGATTCCTGGAGACCATGTTCCCTCAGTACAAGTTCCCAGAGCTGTTTGTCAAACTGCATTCCCGTTCGCCGCGCACGGCCAGATATACACAGAAACTCAAGAGCACCTCCCTGAAGAGGTGACAGGAGACTGGGATTGGGCAGGGTACTTGGTGACACACACTCGCTCACACGCCgtgagagaacagagggaggaggggagtagtggggagggtgtgtatgtgtgctggtgAGAAGAGGTGTGCGTGTCCTTCTTTCTATGTCAAGAGGTGCTTTTTGGGCCATCCGAGCACTTaactcttccctcctctcccctacatgcctctcacactctcctctactcactcacacacacaccctcctgtgCACACTTTAGAGACCGcatttgtgttttattttatttttgtactttttacTTCCTACTAAACTATTTTATTGTAGATGTGTGGTCAGACTGACAGCTGCTCTGATATACACAGCAGCTGATCTCCGTTACTGATACCAGAGAGCAGAGCTATGTATAGAGAAATACATGGGTCGTTCCATGTAATGAGCCCCTTTTGGgtagtgtttcccaaactcggtcctgggttCACAATTAgttttttttgccctagcactaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1787867 lncRNA downstream 18099 53331774 ~ 53339630 (-) True G1562623
TU1787751 lncRNA downstream 69206 53279501 ~ 53288523 (-) False G1562519
TU1787752 lncRNA downstream 69206 53279501 ~ 53288523 (-) True G1562519
TU1787758 lncRNA downstream 178794 53175708 ~ 53178935 (-) True G1562522
TU1787817 lncRNA downstream 214542 53141638 ~ 53143187 (-) True G1562576
TU1787965 lncRNA upstream 105037 53490200 ~ 53491431 (-) True G1562701
TU1787945 lncRNA upstream 125004 53510167 ~ 53511895 (-) True G1562682
TU1787984 lncRNA upstream 238695 53623858 ~ 53628422 (-) True tomm7
TU1787996 lncRNA upstream 317929 53703092 ~ 53730527 (-) True G1562729
TU1787981 lncRNA upstream 318602 53703765 ~ 53705506 (-) False LOC110496534
XM_036953241.1 mRNA downstream 7282 53292413 ~ 53350447 (-) False LOC110496518
XM_036953240.1 mRNA downstream 7283 53292413 ~ 53350446 (-) False LOC110496518
XR_005037511.1 mRNA downstream 20878 53293436 ~ 53336851 (-) True LOC110496518
XM_036953239.1 mRNA downstream 20889 53292413 ~ 53336840 (-) False LOC110496518
XM_021572462.2 mRNA downstream 162720 53188075 ~ 53195009 (-) True mturn
XM_021572948.2 mRNA upstream 7523 53392686 ~ 53395229 (-) True LOC110496947
XM_036953246.1 mRNA upstream 35943 53421106 ~ 53431824 (-) False LOC110496852
XM_036953247.1 mRNA upstream 35943 53421106 ~ 53431824 (-) True LOC110496852
XM_036953252.1 mRNA upstream 132062 53517225 ~ 53529335 (-) False LOC110496853
XM_036953250.1 mRNA upstream 132062 53517225 ~ 53530461 (-) False LOC110496853
TU1786175 other downstream 709952 52644989 ~ 52647777 (-) True G1561279
TU1786137 other downstream 1000419 52356752 ~ 52357310 (-) False LOC110496491
TU1786055 other downstream 1107240 52249354 ~ 52250489 (-) True G1561167
TU1786046 other downstream 1174522 52179320 ~ 52183207 (-) True trak1b
TU1785112 other downstream 1902444 51382672 ~ 51455285 (-) False G1560339
TU1788031 other upstream 213487 53598650 ~ 53602694 (-) True G1562762
TU1787983 other upstream 236737 53621900 ~ 53628422 (-) False tomm7
TU1788090 other upstream 367243 53752406 ~ 53752683 (-) True G1562816
TU1788103 other upstream 489247 53874410 ~ 53875592 (-) True G1562828
TU1788095 other upstream 504546 53889709 ~ 53894949 (-) True mrpl3

Expression Profile