RNA id: XM_021572473.2


Basic Information

Item Value
RNA id XM_021572473.2
length 2466
RNA type mRNA
GC content 0.48
exon number 18
gene id snx13
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53357729 ~ 53385541 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGATAGCTAATACGATGAGCTGAAGTTATCCTTGGTGACAATACCGTGCTGGAATAAGCTCTCTGGCTAGGTGGAATAACCAACGTTATGCGTTTACATTATTATGAGTAACGACGTTGCTAACAGGAGAATCTCTTCAGCTCAACTGATTCAGgccagtctgtctgtgtggggaTGGGGGGGTCTAGGAGTGGTGCTGTTCCTCATCACTTTTGGACCCTTCGCTATCTTCTACCTGGCCTTCTATATCTGCTGCGTTGTAGGCGGtggtTTTGCGGTCACTCTGTTGTTTGGGAAGACCAACTCAGAGAGACATCTTGAGAAGTGTGAGCACTCCTACCTGCCAGCCACGCAAACGGGTATACTGAAGaCGTTGGATGAGATGAGGTTGGAGCAGAAGCCTATAAAGATAGACAGGAGACTGACTGGCTCCAACTACATAGACGAGCCTCTGCAACAGgtcATCCAGTTTGCATTGAGAGATTATATTCAGTATTGGTATTACACTCTGAGTGAGGATGAGTCTTTCCTGCTGGAAATCAGACAGACTGTCCAGAACGCTTTGGTCCAGTTCTCTACACGGTCTAAAGAGGTGGACTGGCAGCCTTATTTCACCACCAGACTGGTGGATGACTTCGCTACTCACCTCCGAGTCTTCAGAAAGGCCCAGGACAGACTGGAGCGCAGGGATGACAATAAACAGAGGGACTTGTCGGAGGAGATGGTGGAGTCATTCTTTGAGgcggaggtagagatggagaggagcgTCTGCAGAGACGTGGTCTGCACCTCCCTGAAGGATGAAgaaggGTTCCTGAGGGACTTGTGTGAGGTGCTGCTCTACCTTTTACTACCTCCTGGAGACTTCCACAACAAGAACATGAGATACTTCCTCAGgGAGATTCTGGCGCGAGGCGTTCTCCTTCCTCTGGTCAACCAGCTGAGTGATCCTGATTACATCAACCAGTTTGTTATCTGGATGatcCGGGACTCTAGCTGTAACTACGAGGCGTTTATGAACATCTTGAAGCTGACAGACAAAGTGTCTGAGCTGGAGGCTGTTAAAGACAAGGCCCTGGAGGAACTACAGTACCTACGATCACTGGACACCGCAGGagatgataTCAATGTTATAAAGAATCAGATCAACAGTCTGTTGTTTGTGAAGAAGGTCTGTGAGACCAGGATACAGAGGCTACAGTCAGGGAAGGAAGTGGATACTCTAAAACTAGCAGCTAATTTCGACAAGCTGTGCATCATACCACTGGAACACATCCTTGTTCACAACATCGCCTTGCAATTCTTTATGGACTACATGCAGGCGGCTGGGGCCCAGGCAGAGCTGTTCTTCTGGCTGACAGTGGAGGGCTACAGAGTAACAGCCCAGCAACAACTAGAGGTGATGGAGGGATGGCAGAAGGATGGAAAGAAGGGAGGTTCCACTCAAGGACTGCTGAAGGCTGCAGCATTAGGGGTCTATGAACAGTACCTGTCTGATAAGgcgtcCCCCAGGGTGCAAGTAGATGAGGTGTCTGTAGTCAAACTAAGAGAGAAGCTACAGAAGGAAGGAGACCCCACGCCAGAGATATTCGACGAGATCCAGAGAAAAgtgtATGACATGATGCTTCGTGATGAGAGGTACTACCCGTCGTTCAGACAGAGTCCCCTCTACATCAGGATGTTAGCTGAACTGGACATGCTCAAAGAACCGTCTTATAGAGGATCAGATGACGGAGATGGAGaATCGTTCAACGGTTCTCCAACAGGAAGCATTAATCTATCCCTGGATGACCTTTCGAATTCCTGCCATGACGACAATATACAGCTACACGCCTTCATCTCTgacacagATATGTGTGGGTACAACAGTAGTGGCCTTAAAAACGTTACCCTGTCAAAATGCCTTGATGCTGTAAGAAACCTAGATGCAGTGTTGTCTCCTAACACTACAAGACGGCAGTCCAGTGAGTTCCATTATTTATGGCATGGATTATGTATCTTGGATGATACAATAGCAAGCATGTTTTGACATTTGATGAATGTTTTGGATTGATTTTGGTTGGGCAGGGTGGGCAAGATTTTACAGCGGTGCGACGAGTAACTTTTGTTTTAGGGCcagaactgtgtgtgtgcctttttGAACTACTGACCACTCCCCCCGACtagccccctcctcccctctccatcacCCTTTGACCTGTAACCTCATCTCCTCACGTTAACCATCAACTTGTATCACTCATGTTACCATCTCATGTTGCTGCTACTTTTCTTTTTACACTTTCATTATTTCATCACCTTTACCATTTCTTCTCTTTTTCCTTCACTCATTCCTTTGCTACTTTTTGTCATCTGTCCTCattccccttctctgtctctgtctgtgcgCTTCCTCTTTatcctttctcccttccctctcctcctcctcgccctctcctgcctcctcttcCCCCTGGTCTCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1787877 lncRNA downstream 2940 53356145 ~ 53358835 (-) True G1562624
TU1787867 lncRNA downstream 22145 53331774 ~ 53339630 (-) True G1562623
TU1787751 lncRNA downstream 73252 53279501 ~ 53288523 (-) False G1562519
TU1787752 lncRNA downstream 73252 53279501 ~ 53288523 (-) True G1562519
TU1787758 lncRNA downstream 182840 53175708 ~ 53178935 (-) True G1562522
TU1787965 lncRNA upstream 105028 53490200 ~ 53491431 (-) True G1562701
TU1787945 lncRNA upstream 124995 53510167 ~ 53511895 (-) True G1562682
TU1787984 lncRNA upstream 238686 53623858 ~ 53628422 (-) True tomm7
TU1787996 lncRNA upstream 317920 53703092 ~ 53730527 (-) True G1562729
TU1787981 lncRNA upstream 318593 53703765 ~ 53705506 (-) False LOC110496534
XM_036953241.1 mRNA downstream 11328 53292413 ~ 53350447 (-) False LOC110496518
XM_036953240.1 mRNA downstream 11329 53292413 ~ 53350446 (-) False LOC110496518
XR_005037511.1 mRNA downstream 24924 53293436 ~ 53336851 (-) True LOC110496518
XM_036953239.1 mRNA downstream 24935 53292413 ~ 53336840 (-) False LOC110496518
XM_021572462.2 mRNA downstream 166766 53188075 ~ 53195009 (-) True mturn
XM_021572948.2 mRNA upstream 7514 53392686 ~ 53395229 (-) True LOC110496947
XM_036953246.1 mRNA upstream 35934 53421106 ~ 53431824 (-) False LOC110496852
XM_036953247.1 mRNA upstream 35934 53421106 ~ 53431824 (-) True LOC110496852
XM_036953252.1 mRNA upstream 132053 53517225 ~ 53529335 (-) False LOC110496853
XM_036953250.1 mRNA upstream 132053 53517225 ~ 53530461 (-) False LOC110496853
TU1786175 other downstream 713998 52644989 ~ 52647777 (-) True G1561279
TU1786137 other downstream 1004465 52356752 ~ 52357310 (-) False LOC110496491
TU1786055 other downstream 1111286 52249354 ~ 52250489 (-) True G1561167
TU1786046 other downstream 1178568 52179320 ~ 52183207 (-) True trak1b
TU1785112 other downstream 1906490 51382672 ~ 51455285 (-) False G1560339
TU1788031 other upstream 213478 53598650 ~ 53602694 (-) True G1562762
TU1787983 other upstream 236728 53621900 ~ 53628422 (-) False tomm7
TU1788090 other upstream 367234 53752406 ~ 53752683 (-) True G1562816
TU1788103 other upstream 489238 53874410 ~ 53875592 (-) True G1562828
TU1788095 other upstream 504537 53889709 ~ 53894949 (-) True mrpl3

Expression Profile