RNA id: XM_036953247.1


Basic Information

Item Value
RNA id XM_036953247.1
length 2218
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC110496852
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53421106 ~ 53431824 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actggaggGCACTTGGGTCGGGTCGCGGAAGGGTGTTGAATGTGTCTGCGCAAGCGTTTAAGCCCCATGGACAGCAACCGCGTGCCAGTCTCGTTTGCGACCGTTCAGAGCATAATGCTCTCCTCTCATTATTGACCGGAGGAGCTCCCGTTATCAGCAACAGCAAACAGACGACTCACTTTTGGATTTGATCCAGCCTTTATTCATGCAGGTTAGTCTCGATAAAAATAGGtagtaaaaaaataacatttactCGACATGACAGAGATGTCCGTGGAAGGCAACCTACTCTACATTTCAAGCGGATTTACCTGATCTCCTGCCCAGAACTTTCCTCATCAGGGATATGCACATCAAGCCGCTCTCCGAGGGCtgactccctctcctcctctgtccgcCGGCGTTGGATCCTCCAGGGTCGGGTTGCTAGTTGGCACAAGTACATTATAAATGTTTTGAAATGGGGTGAAACCAGAAGGTACCTGAACTTATCCAGGTCATCTATATTTAACCAGGACAGTCCACTTATCAACAACCGTGACTGTTTTCCGGGGAGCAGCCTATTGTTGTTTTTCCGTTTAAAAAAGTTTTGCTGCCAACCCGTGTCCTCCTGACTGAAGCCGACTTAGGAGGGCAGACAGGCGGACTGGTCTCCAGGAGGATGCCTGGGCAGGATGTGTTCCAGCCGGAAAATTCTGTGGAGCCTGCTGCTGCTGTCAGTGTTGGAGGTGGGGCTGGGGGTCTCCAGTATCGTCCTGGGAGCCGTTGGGCTCAGCCGGGTCAGGGAGGAACACAAACCACAGCAAGGAGATGCTTCACCTATCTGGAGTGGCCTGTGTtttctcATCTGTGGGATGTGTGGAGTCCTGTGTGCTAGGAAGAGGACTGGACTCATCatgatTCTGTTCTCAGCCTGCTGTATCTGTGGTCTGATTGGAGGGATTCTCAACTTCCAGTTCGTTCGGGCGTTGGCACGACGACCGGACTCTCTCCGCTCGCTACACCTGGCAGccatgaccattgcctgcctggGTATCTCTTCCTGTACTCTCTCTACCTGGTTGACCTGTCGTCTGGCCAGCTCAGAACAACAGAGGATGTTTCTGGAGAGAGAACACTCACTGCACCACTCACATGAGATGGCTGAGAAGGAACCATACACACACGGATCTTTTGAGATTCTGGACAACTCCAGCAACGGGATTCCTCAGATCTCCTACAACAGCAACACCACCTCTCTTTGACAACAGACACACATTGTTGCCCTGACAACAGACACACCTTGTTGCCCTGACAATGGATACACCTTGTTGCCCTGACAATGGACACACCTTGTTGCCCTGATAACAGACACACCTCGTTCTGCTGACCATGGGGTGGTATCATCCAACAGAGCTGAGCAGCACTATTACACAGTTGTGTGTGGAGAACTTCAGCACAGAAATTAACGCTCTTCTTGGACAAGTTGTTACTAGTTCTGATAGTCCCAACAAACAGTCACATGACCTCATGTGCATGCAATCAATTTgtaatctctctctatctctctctctctggctataTGAATGCAGGTATACTGTGTTTGAAGGAAAATGCTATAGCTATCTGATGTAGAGCAGAATATGGAATGCTTTAAATATTATATATGCAACCAACGATGCAAACTGAATATCAGTGGTGGCCAACCATCCTCCTGGGTAGCTACTGGGTTTGCAGGCTTATGCTCcagccctgctctaacacacATAATTAAGTTAATCAGGATCCTGGAGACTGAACACCAAGCTCTCAAGGAGGTGGGTTGGCTAACCCTGCTGTATATTCATGCTTGTATATCAGGAAAACAAACATTATCTATGGAGTGACAATATGTTTCTTTAGGCTTCTATAAAACACACATAAAACTCTGTAAACGTTAGATGGTGTTGTAGATTTCATAACCAgttccagagacagacagacacacacacacacacacacacacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtcaggcaTCCTTTCTGATATTGAATTAGAGGAGACACACTTTCTGCTAAGGGGACTATTGTCTGTGGGAGTACAAGATATTGATCTCACAcgccagtgtgtgtgcgtgcgtgcatgctaATTGAGCATTAAATCAAA

Function

GO: NA

KEGG:

id description
K22195 TMEM196; transmembrane protein 196

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1787875 lncRNA downstream 26630 53353741 ~ 53394476 (-) False G1562624
TU1787877 lncRNA downstream 62271 53356145 ~ 53358835 (-) True G1562624
TU1787867 lncRNA downstream 81476 53331774 ~ 53339630 (-) True G1562623
TU1787751 lncRNA downstream 132583 53279501 ~ 53288523 (-) False G1562519
TU1787752 lncRNA downstream 132583 53279501 ~ 53288523 (-) True G1562519
TU1787965 lncRNA upstream 58376 53490200 ~ 53491431 (-) True G1562701
TU1787945 lncRNA upstream 78343 53510167 ~ 53511895 (-) True G1562682
TU1787984 lncRNA upstream 192034 53623858 ~ 53628422 (-) True tomm7
TU1787996 lncRNA upstream 271268 53703092 ~ 53730527 (-) True G1562729
TU1787981 lncRNA upstream 271941 53703765 ~ 53705506 (-) False LOC110496534
XM_021572948.2 mRNA downstream 25877 53392686 ~ 53395229 (-) True LOC110496947
XM_036953245.1 mRNA downstream 35565 53357729 ~ 53385541 (-) False snx13
XM_021572473.2 mRNA downstream 35934 53361775 ~ 53385172 (-) True snx13
XM_021572467.2 mRNA downstream 35941 53357729 ~ 53385165 (-) False snx13
XM_036953252.1 mRNA upstream 85401 53517225 ~ 53529335 (-) False LOC110496853
XM_036953250.1 mRNA upstream 85401 53517225 ~ 53530461 (-) False LOC110496853
XM_036953251.1 mRNA upstream 85401 53517225 ~ 53530465 (-) True LOC110496853
XM_021572476.2 mRNA upstream 100098 53531922 ~ 53537775 (-) False LOC110496522
XM_021572477.2 mRNA upstream 100098 53531922 ~ 53537779 (-) True LOC110496522
TU1786175 other downstream 773329 52644989 ~ 52647777 (-) True G1561279
TU1786137 other downstream 1063796 52356752 ~ 52357310 (-) False LOC110496491
TU1786055 other downstream 1170617 52249354 ~ 52250489 (-) True G1561167
TU1786046 other downstream 1237899 52179320 ~ 52183207 (-) True trak1b
TU1785112 other downstream 1965821 51382672 ~ 51455285 (-) False G1560339
TU1788031 other upstream 166826 53598650 ~ 53602694 (-) True G1562762
TU1787983 other upstream 190076 53621900 ~ 53628422 (-) False tomm7
TU1788090 other upstream 320582 53752406 ~ 53752683 (-) True G1562816
TU1788103 other upstream 442586 53874410 ~ 53875592 (-) True G1562828
TU1788095 other upstream 457885 53889709 ~ 53894949 (-) True mrpl3

Expression Profile