RNA id: XM_036953248.1


Basic Information

Item Value
RNA id XM_036953248.1
length 4637
RNA type mRNA
GC content 0.49
exon number 16
gene id itgb8
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53497721 ~ 53514974 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGTCAGTGCACAGCATAaaaccaagagagagacagatttttTAGGCTGGGCTTTACAATCAGCATATGGTCGTGAGACGCTCAACGCTGAAACATTGCAAAGAAGAAAACGATATAAACAAAGGAGAGGAACGAGAGCGCGCTGAGACACTGGTGTTGTTTGAATGAGCTCAGTGAAGTCTCTCCCGGGACACAGTATGTGACGGGGGGGGGGCACAAAACGTCACTACACCTGCTGCGGGCTGGGATAAATGcacgatagagagagaaagagagatgtctCGTTTTCACTTTCTCAGTCGCACTATAAAGAGCTTGCCAAGGCAACTCCACGTGAATCAGATTTCTGGGAATAATCGTCTGTTTGGATAAGAAGGTTATTGGGCGGAAAGAAAACAAACAACAATGCCCCAACGACGCACCATTCATTCCTGGCGCTGCCTCTTGTTCACGCGGTCGTGCGGTATTTCCCGGTTGATTCCCATTATTGGAGAGTGTCAGTAGTAGGCGGTGACCGGAGCTGCATGCCTGCTGCCGGTGTCTCGAGCTGACCCGATCCCTACAGCCTGCCCCCGGTGTAGATATGACTTCCTGGCTACATAAATACGGTTACCCGACTCTGCATTGCGTGCTGCTCTGCGTGGTATTGGCCGCTAACATCATCGGCGGGAGCTCTCATTCCGGTGAGCGTGTATGTTCGTCTCCTCCTGTCTCATCGTGTTCAGAGTGCCTCCGACGCGGACCACAGTGTGCCTGGTGCTTTGAGGCgGGTTTCCTGGATGGAGCGGAGGTGGGAGAGCGCTGCGACCTGGTGGGGAACCTGGCAAGGAGGGGGTGTGGCCTAGAGTTCATAGAGCATCCAGAGGTCATGGTGGAGGTCAATGCTACGACCAGCAGCACTCAGGTGTCACCGGGAGAGATCACCCTCACACTCAGACCAGGTGCTGAGGCCAGTGTGATAGTAGCAGTACAACAGTTAGAGAGGTATCCTGTTGATCTATACTACCTGGTGGACGTATCAGCATCCATGCAGGAAAACCTGGACCAGCTGAAGACGGTGGGCGTAGCCTTGTCCCACCGTATGAGAGAACATTCCAGTGATCTGCGTCTGGGGTTCGGCTCCTTCGTTGACAAACCTGTCTCCCCCTACATCAATGTACACCCCTCTAAGATAAATAACCCCTGCAGTGACTATGAGGTGAAGTGTCGCCCAGCCCATGGCTTCCACCACGTTCTTAGTATGACGGCCAACATGTCCGAGTTTACACGCATCATCAAGAGACAGAGGATATCAGGCAACATGGACACACCAGAGGGAGGGTTAGACGCTATGCTCCAAGCTACTGTATGTCAGgGTGAGGTGGGTTGGCGTGGGGAGGCCAAGcgtctgttgttgttgatgacaGACCAGCCTTCTCACCTGGCGTTGGACAGCAGACTGGCTGGTATAGTCACACCCCATGATGGCCTCTGCCATCTGGAGAACAACGTCTATATGGAGAGCACTAccatgGACCATCCCAGTTTAGGCCTGTTGGCTGAGAAGCTTCTAGAGAACCACATCTACTCTCTCTTTGCTGTGGAACAACTACAATATCAGTGGTATGAGGAGTTGGTCAGGTTGCTACCAGGCTCCAATCTTCTGTTCCAGGCTCCCAAACTTATAGACGTGGTGGTGGATGCatacaagAGGTTGTTGTCAGTTGTCCAGGTGTCTGTGTCAGTGGAGGACAGAGCATTCAGCCGTTTCCTGGTCagcgtctctcctctctgtccggAAGGATCTGTATCCCACGACAACCGCAGCTGCTCCAACGTCCAGCCCAACCagacggTCTACTTCAACATCACCATCGGTCTGCACTCCTGTcctgacgatgatgatgatgacgtgGTCCAGGTCTTCGTCAGGCCCGTGGGTTACAATGAGTCATCCATCATCAAGGTTCACTCACGATGTCGCTGTCACTGTGGACCGGACTGGCATTGCCACGACGATACCACACATCAGTCAACGTGTGGTGAGGTCACCCCAGATACAGACCGTAATAATCAAGACATGAACAATcgggacatgcacacacacacaccggacctAGACCCAGAGCACACACCCacacgccctcacacacacacaccggacctAGACCCAGAGCACACACCCacacgccctcacacacacacaccggacctAGACCCAGAGCACACACccacacgctctcacacacacacaccggacctAGACCCAGAGCACACACCCACACGCCCTCACACACACGGACCGGAGTGGTCACGGCAGTGTCGTGCGGAGGGATCGGGGGTGGACTGTAACGgtcggggagtgtgtgtgtgtgggaagtgtgtgtgtgagaggaacAGTCTAGGAACAGTGTATGGACAGTACTGTCAGATGGACGACTACTCCTGCCCCTACCAACACGGACTACTGTGTGGagggcgaggtatgtgtgtgtctggtgaTTGTGTATGTGAAGAGGGCTGGACAGGAGAGAGCTGCAGGTGCCCAGTCTCTACGGCAATCTGCCTGTCCGACAACGGGTTGCTATGCAGCGGGcgtggcaggtgtgtgtgtggcagatgTGTGTGTGACAACCATCAATATTCCGGAGCATTTTGTGAGAGATGTCCCACCTGCCACAGCTCCTGTCAGTCACACTGgAGGTGTATAGACTGTCACTTGTCTCACGGTCTGTCTCAGAGAGAGGCTGGGGAGTGCAACCATACCTGCATCCCATTAGTGGGTTACGTCAATGATGTCACAGtcctacTAGGCCAGGTATGGAGACAGTGTGTGTATAAGAAAGACAACTGTTACTATCGCTTCCACACTGCACTTGTCTCAGGAAATACTCTTCTACATTTCAACACACAacctgagtGTGTTTCCAGTAGGCGGTATGTGGGGAccttcctcagtgtgtgtgtgttgacgttCCTCCCTGGCTTGGTGATGCTGGCTGTGCTGGTGCTGCTGCTGCACAGACGATCTTTGCCACAGGGTGGCGCCACTGATCAACAATACAACCCCACTGGCAAGGATCTGTCACACGTCCCAAAGACCAATGAGAAGACGGTATCCTACAGGAGGGACCGCCCCCCGGGCCCTGACCGACCAATGGAGATGCATATCACCGTTCCCAAGATGCCCCTGGGCGAACCCTGGCAGtaaggggtcaggggttagaggtcaacaGTTGAAGTGGGCCAATGCTGACCGGTACAGAAAAGCAGCAACTCTAATGTTATACTGCTTGAGAACCGGCACCTGTGAAATACAGGTACAGTAAAATGACAGTGAGCAGGGCTACAGGAATCTTCTCTCAGTACACTTGCACTGGTTACAGGTTAGGGGAAGGATAGTAAATCATGAAAAACTGGACAGAGTAACACTCCAAACAGGAGTCTTGTTACTGATACTGTAATATTATGTGGCTTTATGGACTGGCAGCCATTGAAAGGTACTGAACATTGATCGATTTATCAATGCTAAATATTTATGCTTTTATTACAGAGAACACTACAAGTTTATTAGTTtacttgatctctctctctctactcaacctgtgtgtcctgcgTTAGCTTGCCACCTAGTGGTCAGTGGTGAAACGACATAACAGAATGGGATGAATGAATAATTGGATgaaggaatgaatgaatgaatgagtgaaTGGTGACCTTGCACCAGCAGTAACGTGTGAATATGTGACACTCCACAAtcattacctttttttttttacctaccGCCAAATCTACTTGATTTCTTTATTCTATGTGCCTGGCATAACTGGAGTTTTGAGAGGACAGGTAGCCTCCAACGGTTGTTAATGTACAGTATCTAGTTTTAATATTTGAAACAAGCATTAATTTAAAATTAGCATACTTgtggagagacagagtagagattTGCACTAGCATCGTTACGTAGCATGATAGGTCGTAGTGTTGTCAGACTACTGAGTGCTAATTGGCTCCTGAACTATTGGGAAGGCTGCTGATTGGCTCCTAAACTACTGGGAAGGCTCCTGATTGGATCCTGAACGTTCCATAATACACTTCTATCTACAACAATTCCAGTAAACAAAACTATGAATAATATTTAATAATGCATTTGTTGCATGTTTTCTTTACATCTGATGTTTGATGTTTACAGCATTCATTAGCTGCTAATTTATTTAGTCCATAACACTAATATCATTATTTATTGTGATttatttcaacaaaaaaaaaatgtttattgtcATTTTTGTATTCTATTTTTAATTAAAGGTACTGACTGCCTACAGGGCTGTAATATTACAGGACTGTATCTCAATGTTAAATGAATCAGTAATTATAAAAATGATCTCTCTAACTGGCAGACTTGGGTCAAATACTTTCAAAAACTGGTATCACATTATTAGAATGGTACCCATTGTCTCACGTCAGAAAGCTTGACAACCTTGTCTGCATAGTTCATGGCCAGTCTGAAGACAATGAAGGGCACCTACtgcacatttggaaagtattcagaccccttgactttttccacattttgttacgttacagccttattctaaaatgtattaaattatttaattttctcatcaatctacacacaataccccatactgacaaa

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1786759 lncRNA upstream 2008 53495397 ~ 53495714 (+) True G1561723
TU1786600 lncRNA upstream 197752 53292431 ~ 53299970 (+) False G1561593
TU1786603 lncRNA upstream 197752 53292431 ~ 53299970 (+) True G1561593
TU1786566 lncRNA upstream 361196 53135743 ~ 53136526 (+) True G1561562
TU1786411 lncRNA upstream 455883 53038951 ~ 53041839 (+) True G1561433
TU1786747 lncRNA downstream 6490 53521464 ~ 53524347 (+) False G1561712
TU1786748 lncRNA downstream 6490 53521464 ~ 53524347 (+) True G1561712
TU1786778 lncRNA downstream 24800 53539774 ~ 53541773 (+) True G1561739
TU1786784 lncRNA downstream 38324 53553298 ~ 53553592 (+) True G1561745
TU1786811 lncRNA downstream 71396 53586370 ~ 53587352 (+) True G1561769
XR_002469633.2 mRNA upstream 91217 53404665 ~ 53406505 (+) True LOC110496948
XM_036953242.1 mRNA upstream 190596 53277785 ~ 53307126 (+) True LOC110496519
LOC110496851 mRNA upstream 209097 53287015 ~ 53288625 (+) True LOC110496851
XM_021572466.2 mRNA upstream 216884 53277785 ~ 53280838 (+) False LOC110496519
XM_036953243.1 mRNA upstream 222666 53198538 ~ 53275056 (+) True sh3bp5a
XM_021572949.2 mRNA downstream 103848 53618822 ~ 53621390 (+) True LOC110496949
XM_021572484.2 mRNA downstream 141252 53656226 ~ 53663553 (+) True klhl7
XM_036953257.1 mRNA downstream 160519 53675493 ~ 53703310 (+) False LOC110496530
XM_036953258.1 mRNA downstream 160520 53675494 ~ 53703310 (+) True LOC110496530
XM_036951071.1 mRNA downstream 198862 53713836 ~ 53730416 (+) False LOC110514975
TU1786545 other upstream 209257 53277790 ~ 53288465 (+) True G1561544
TU1786576 other upstream 318785 53175722 ~ 53178937 (+) True snrpd1
TU1785814 other upstream 1055781 52441146 ~ 52441941 (+) False G1560957
TU1785750 other upstream 1141887 52355297 ~ 52355835 (+) True G1560911
TU1785643 other upstream 1240192 52256636 ~ 52257530 (+) True G1560811
TU1786840 other downstream 203395 53718369 ~ 53719476 (+) False LOC110514975
TU1786837 other downstream 205344 53720318 ~ 53724664 (+) False LOC110514975
TU1786912 other downstream 302190 53817164 ~ 53840871 (+) False G1561845
TU1786914 other downstream 302190 53817164 ~ 53822863 (+) False G1561845
TU1786915 other downstream 302190 53817164 ~ 53826249 (+) True G1561845

Expression Profile