RNA id: XM_036953251.1


Basic Information

Item Value
RNA id XM_036953251.1
length 5615
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC110496853
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53517225 ~ 53530465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgggcagccctgttgTGTAGCATAAGGGCTAGTCTCTGGTCCTTATAATATACAGACAAATATACaaacggagggagagaggcagcgagagagtaTCCCTTATAATATACAGAGTGCGAGTGTCCCTTATTCGACGGTGAGAACGGGAGATACACTGACCATATAATAGAGGGAGCGAGACAGACTCACCCctgtgatagagagggagagaaagcagaAGGCAGCGAGAGGCCAACCTTCATCAAAAAAagtggaggaggaaaggagagactgGCCCTCATGATTAAAAAAGAGAACAGAACGTTCACACCTCTCCTCTTGCCCAACCCCCACATCACACAGTCACTGCCTTCTCTCTGCTTCTCACCCTACCTTGACTCTACGCCGTACGAGCGTACAGCTGACCGCAAGGCAGACTGGGAGATGAAGTCCCCGTTGCCACAACACATTTCGAAGGCGAGGCTTCGCTAAATACAACTCCCATCTCAACCCTCGCAGACCGAGTCCTGAATATGTGGGAGGAGCGCACCGCCCACAAAAAGCCACAGCTATCTGTCTCCAGCTGCAATTCTAAAATCCAACTATAAAAACAGCCATAAAATAGTGGTATTGATGAGGGGGATTTTTGCATGAAGATCATTGGAAAGGCTTGTTGTACCTAGCGGCAGAAACAGCagcgacagaaagagaggagagacggcGAGGGGTGTTGGTCTGATGGGTAAATGAAAGTGGGTGGGCCTACCGCGGACACATTACTAACTTGAATTAGAATACATTTTTCCAGTCGATTTTTCCGTTAATGGAATTAACGCGCGTCGGTCGTTAAAGGGTGTTTTCGGTTGGTTTTGAGAGGCGTCGGGCGCGGAAACCGGACCATTTCCCGTTATCACGGGAGGTTTGATTGTCGCTCGAGTTTTGTACCGCCCTTCCTGCCGAGTGGGTGGTTTAGGTGCTAACCGGAGCGACGACACAGCCCAGCTCGAGCTATTCGCGGAGAAAAAAGGCCGTCCTTACCCGGTGCTTTAGCCGGCCTTTCTCCCCTAGCCTCTCCTCTCTGGTTTATGAATGCGTTATGAGTGATCAGAAGAAGGAAGTGTCGGGATCAGAAGGAGGGAAACCAGGCAAGAAAGGCAAACGTTCTGGATCACAGgattcCCAGCCGTCTCCCCTAGCCCTACTGGCTGCGACCTGCAGTAAGATAGGAGGTCAGGGAGGAGTGGAAGGACAGGTCCAGTTGCAAGCtggtcaaatacagTTGCAGGGTGGGCAGATCCAGGGTCATATAGTTGTAGACGCAGCAGGTAATCAGACTCTGGTTCAGCAGCAGTTAGAACTGGTTCCTGCCCAGTTCACTGGTAATGGCTGGCAGATCATCACTACCGCTCCCCAAATGGCCAATGACACTGCCAATCAACCTGTCGCCGTAACGCTGGCCACCACTTCCGCCAATGACAGTGCTCCGGCAGGCCGTAAGGTGAAGGCAGTGGGCGGAACTAAAACCATAGCAGCCAATCAGCAgccgcagcagcagcagcagttccagatcatccagGTGCAAAATATGCCTTCGTCGGGGGGTGGGGTCCAATACCAGGTGATCCCCCACCTGCAGACGTCAGACGGCCAACAGATCCACATCAGCCCCCAGACCGCATCCCTGGGGGGGCAGCACATCCAGATCAGttcGGCCCAGGGCGGTCTACCAGAGCAGGTCCAGCTGATCCAAACCCAGAACCAATCCCAGACCCAGGCCATCCTACAACCGGCCAACCAGCAGGCCATCCTCACTGGCTCAGCCAATCAGACGTTGCAGCTTCGTCCAGCCCAATCCTTCCCGCTACAGATGCAGACCTTACAGGGCTCCCAGACCCAGGTAATGACTACAGTACCCATAAACATCGGCGGTATGACCCTCGCCCTGCCGGTCATGAATAATTTAGCGGGGGGCGGAGCCGTGCAGCTTATCCAAGCAGCCGACGGCAGCTTTACCGTAGCTAACAGTAACCAGCTGGTGACAACAACGGCGGCGGTGTCCGGGGCAGCTACCGGGTCATCTGGGGGTACCATAACAACTGTTGCCGGGTGCGATGGAGCATTGTCGGACGGAACACAGCTGAGTTCTGTAGCCGGGTCGGATGGAGGGGCGGAGAGAGACTCACAGAACCAACCCAGCGAGCAGGACTCACAGAACTCACAGATGAGCCAGGCCAACGGACTACAGGGCCAATCAGATCCTCCAGGGACCATCCAGCAGGTCATCGTGGGACAGATGGGCAACCAGGTGTTGCAGCAGATCCAAATCCAGCCACagaaccagATCCAAGGCCAGCCGCATCAGATCCAAACCTTTCAGTTAGGACCAGGCGGGACCCTACAGCCCATACAAGCCTTCCAGAACCAACAGGTTCTGATCCGGACCCCAACCCTCTCCTCGTCGGGCCAGATCACATGGCAGACTCTGCAGCTCCCTGGGGGGATGTCTGTGCCTCAGCAGCTGACCCTGGCCCCTGTGGGCGGAGGGGCTGTGGGAGGAGGGGGCTTCGTGCAGCTGGGGGGGGCTCCCCTGACGCTGAGTGCAGCTCAGATCAACCCTGGGTCGGGAGTGCAGACGGTCAACATCGCTGGACTGGGCACCGCTGGGGTACAGATGCAGGGGGTACCCCTCACCATCACTGGACTACAGGGTCAGCCACAGGGTCAGGAGGGCGGGGTTAAGGTCCAGTCGTCCCCAGTAAAGGTAACCATGGGTAACGTGGCGGGGTCGTCGCTAAGCCCAGACCAGATGGGTTCTGTCCAGAGTTCGTCGGACCAGGAAGGACCACCCAGCAAGAGGCTTCGCAGGGTGGCGTGCTCCTGTCCGAACTGCAGGGACGGAGAGGGgaggaccAGTGGAGACCCATCTAAGAAGAAGCAGCATGTGTGTCACATGGAGGGCTGTGGAAAGGTCTACGGTAAGACCAGTCACCTGAGAGCTCACCTCCGCTGGCACACAGGAGAACGACCCTTCGTCTGTAACTGGATCTTCTGTGGCAAGAGGTTCACACGCTCGGATGAACTGCAGAgacacagacggacacacacagATGTACCCATCCTCCAGGTGAGAAGAGGTTTGAGTGTCCAGAGTGCAGTAAGCGTTTCATGCGTAGCGACCATCTCTCCAAACACATCAAAACCCACCAGAACAAGAAGGGGGGGGCTTCTCTCGCCATCATCACCACTGAAGACATGGAAGATTCCAACCAGGGTTTAGGCTCCTCCCCTCGCATCGTAACTGTGGAGACACTCTCCCAGGACTCCGCCCCTGCCACTCCAACAGCCTCCTCGCCCAATCaaatggagggagaagaggaggaggaggaagaggaggagtttTGAGTAGTGACCAGTGACCACTTCCTGTTTAGGGATAAAGCAGGGAGAGCTAAATTCCTGGTCGGTCTCCATGGTTATGCTGTGGCTGTGGAGGTCAGGTggtctattttttttaaatgttgtttttaaAAAGAAGAGAAATACGATGAACTGAATATTACATAAACAGAGGGAGGAATCTGAATCTAAACTAATGAATTAATCTAACGACAGACTAAAGGTATGAATTAGTTGAATGGTGTTTATAACAGAACAGAGGTCAGGGGAAAAGGTATAATATAGATTTATAATCTAAACTTGCACCCTatcccttatatagtgcactacttttggccagagccttCTGAGTAGTTTATGTAGGGAGGAGAATGCCATTTTGGATAGGCTAATTAAACTAGCACAAGACAGAACCCTGGAGTTGTAAAACATCAAGAAGAGAcattggttgtgtcccaaatagctagggtgccatttgaaacacAGCAATTGTATCTCTATGCACAAAGATGTTCCTCTGCTAATACTGtaatgatgattatgatgaaGAAACATGATATGTGGCACGGTCCAGACTGTaggacagacaggtgagaggagcagggacaggtgtgtgtatgtgcgtacgtgtgtgtgtttgagagtgtgtgaCGATGTATCCCGGTTCAACAGGACTATAGTTCAGGTAAAGACCAGTCTGATAAACTCTTACTGAAGAAAGACCAGAAAAAGAGGAATAGACCTCTAAAGGGTCCGAAAAAAGCACATAGAACATATGTATAAATGATGCATTCCTATAGAAACGCTCTGCATTTGAAATATTAATCGTTTCTATAAAACAAACAATCTAGCTTTCTGCAACAGGCTGTTTAGTGAAAGCAATACTATAAGACAATCCTAGTGAAACCATGTTTACATTAATGACAGTAGAGGAAAAGGTTTCCCTGGTATGAAACAGCCAGTCAGCTCACAGCGTTAAAGGTGCACTCAGCAATATGACATCATACACAGCGGGGTGATTTCCTGCTTGATGATGCCATATTGCTGAGTGCACCTTTAAGAAGTAGCTCTCctggggttggtgggtgggtaAGACAGTGTCAATAAGCAGTACTAATGTCAAAACACACGGTGCTCCCACTGATACTCAGAGCAGCAGCTGTTTGTACCAGAACCAGTTTAGAATAGGGCAGTAATGTGACTCAATCATCGTATCTGAACCCTAAACTTGTATAAAGTATCAACGTCTGAGATATAAACAATATGCATTTCAGTAATTAGACATGTTTCAAATAATATATATTCACGATATTTCAAGTGATTAGAGATACTCTATTAACAGTGGTAGAGTTCGTGTGATTTGACGTTGGTGCTGCTTTCTCTGCATTGTGAAGGTAGAGCCCCCTGTGTGTGAGTCCTGGTACTACAACGCCTTAAAACAAGCagtattacacacacacgcacacatacacacatgtagtGGGGGGAAGGGTGGGGCATGGAGAGAAGGGGTTGTGGCAGGGTGGATGTTATTACTATGTGGTTGTTATGACAAGTGTCTGGTGATGTTGCTCTATGTTAGTGTCAGTGCATACGTTTTGAATTGTACTTTTAGCTCTTTATTTTCTTAACCCCCCCAGTACATTTTGACACAGATGACTACTGTGTCCAGCTAATTGATTATCTGTTCTATTTTAATATCTGCCTTTTGCTGGAGTGTATCGTACGCGTTGAACAGAGGTGTGTGTGCAGCATGTTGCCTTTTAGTGCTGTTGTCTCTATTTCATTCATCCTAAACTTATTTTGCTACGTCTGTCGTTGTCATGACTGCGGCCCGTCATTTCTACTACTCTTAACGCGTCAtaatatgttttaaaaaaataaaatgaaagcaAAACGTTCATAAAAAAGATTTGAAAATTAAATGGTTGAATTACCAACCAGATGTGGATGTTTTCGGTAATATTTTGTGTGACAACCAGTTTTCTTTCATATTTTCTAGTGACATCTCATTTGTAAAATGTTTTTCTAAGCAGTTTGTGGGATCTCCATGATGATTGATAAATCTGGCCTCCAAGGCTGCAGGTTCTTGATTATTGATATTTTATTGATATTTTTAAATCAACTTTGTACAAATGTGTTGTGTGACTGGGGTTAAAGAAgtgaaaagagaaaaaaagactTTGCCTGCATAACACTTTAAATAAAgtgatgaaatcagtctaaaccAGTCTCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1787945 lncRNA downstream 5330 53510167 ~ 53511895 (-) True G1562682
TU1787965 lncRNA downstream 25794 53490200 ~ 53491431 (-) True G1562701
TU1787875 lncRNA downstream 122749 53353741 ~ 53394476 (-) False G1562624
TU1787877 lncRNA downstream 158390 53356145 ~ 53358835 (-) True G1562624
TU1787867 lncRNA downstream 177595 53331774 ~ 53339630 (-) True G1562623
TU1787984 lncRNA upstream 93393 53623858 ~ 53628422 (-) True tomm7
TU1787996 lncRNA upstream 172627 53703092 ~ 53730527 (-) True G1562729
TU1787981 lncRNA upstream 173300 53703765 ~ 53705506 (-) False LOC110496534
TU1787982 lncRNA upstream 173300 53703765 ~ 53705600 (-) True LOC110496534
TU1787997 lncRNA upstream 203705 53734170 ~ 53743453 (-) True G1562730
XM_036953246.1 mRNA downstream 85401 53421106 ~ 53431824 (-) False LOC110496852
XM_036953247.1 mRNA downstream 85401 53421106 ~ 53431824 (-) True LOC110496852
XM_021572948.2 mRNA downstream 121996 53392686 ~ 53395229 (-) True LOC110496947
XM_036953245.1 mRNA downstream 131684 53357729 ~ 53385541 (-) False snx13
XM_021572476.2 mRNA upstream 1457 53531922 ~ 53537775 (-) False LOC110496522
XM_021572477.2 mRNA upstream 1457 53531922 ~ 53537779 (-) True LOC110496522
XM_021572479.2 mRNA upstream 9266 53539731 ~ 53596671 (-) False LOC110496523
XM_021572478.2 mRNA upstream 9266 53539731 ~ 53597145 (-) False LOC110496523
XM_036953253.1 mRNA upstream 9266 53539731 ~ 53597146 (-) True LOC110496523
TU1786175 other downstream 869448 52644989 ~ 52647777 (-) True G1561279
TU1786137 other downstream 1159915 52356752 ~ 52357310 (-) False LOC110496491
TU1786055 other downstream 1266736 52249354 ~ 52250489 (-) True G1561167
TU1786046 other downstream 1334018 52179320 ~ 52183207 (-) True trak1b
TU1785112 other downstream 2061940 51382672 ~ 51455285 (-) False G1560339
TU1788031 other upstream 68185 53598650 ~ 53602694 (-) True G1562762
TU1787983 other upstream 91435 53621900 ~ 53628422 (-) False tomm7
TU1788090 other upstream 221941 53752406 ~ 53752683 (-) True G1562816
TU1788103 other upstream 343945 53874410 ~ 53875592 (-) True G1562828
TU1788095 other upstream 359244 53889709 ~ 53894949 (-) True mrpl3

Expression Profile