RNA id: XM_021572480.2



Basic Information


Item Value
RNA id XM_021572480.2
length 789
RNA type mRNA
GC content 0.46
exon number 3
gene id tomm7
representative False

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53621900 ~ 53628443 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TAAACCACATGCCACGCTTTACGGCAATGCGTCGGCTTCCTCTTTTTCACGTCCTTCAGAACCAGAACCAGTGAACCAACTAGCTACCATGGCGAAGCTCAGCAAAGAGACCAAGCAGCGGCTGCAGACGGTGTTTCAGGCCGGACAGTTCGTCATCCGCTGGGGTTTCATCCCCACGGTGCTCTACCTTGGTTTCGCACGAGGGGGGGATCCTGGTATGCCGGAGCCCAACATCCTGAGTCTGCTGTGGGGCTAAGGACAACCCTGACCCACCCAATCACCTCCTCCCACAATGGTCATGTGACTCCCAGCTGTCACCACAGAAGTGGATGCCATCTTTCCCTCAACAATTTCTATATGGCCCATATATTTTAGGCTGGTTGGAACTTTCTTTGTCACTTCACGTTTGGGTCGGAGACCTGAAGCGCTGAATTCCCTCTCACTCTGAAACACCAAATGGCGGGATGGACATCTTATTCTGAAACTGCACCTTTACTGCTTGGTGACGGAccatttttctctcattttgtttcCTGTCAGTTTGGAAACATGTAAAACCTAGTCTTTTCATTTGGTCATGGATCTGTGTTTGTCTATTTACCTTAAATCATCCTGTATAAAATGTCTGCCTGTTGGTTGAAAATGGACCTGAGTTGGTCTATAAATCACCTTTTGAGAGAAGATTACTGTTTGGTTTGATTTTCGATTTATACCGTGACATTCTATTTTTTTCATGGAACCTATACATTTTTATGGGCCTAATAGTAGCCTAAAGCAATCCGGTaaacg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1787945 lncRNA downstream 111823 53510167 ~ 53511895 (-) True G1562682
TU1787965 lncRNA downstream 132287 53490200 ~ 53491431 (-) True G1562701
TU1787875 lncRNA downstream 229242 53353741 ~ 53394476 (-) False G1562624
TU1787877 lncRNA downstream 264883 53356145 ~ 53358835 (-) True G1562624
TU1787867 lncRNA downstream 284088 53331774 ~ 53339630 (-) True G1562623
TU1787996 lncRNA upstream 74649 53703092 ~ 53730527 (-) True G1562729
TU1787981 lncRNA upstream 75322 53703765 ~ 53705506 (-) False LOC110496534
TU1787982 lncRNA upstream 75322 53703765 ~ 53705600 (-) True LOC110496534
TU1787997 lncRNA upstream 105727 53734170 ~ 53743453 (-) True G1562730
TU1787988 lncRNA upstream 109900 53738343 ~ 53740990 (-) True LOC110496535
XM_036953253.1 mRNA downstream 26572 53539731 ~ 53597146 (-) True LOC110496523
XM_021572478.2 mRNA downstream 26573 53539731 ~ 53597145 (-) False LOC110496523
XM_021572479.2 mRNA downstream 27047 53539731 ~ 53596671 (-) False LOC110496523
XM_021572477.2 mRNA downstream 85939 53531922 ~ 53537779 (-) True LOC110496522
XM_021572476.2 mRNA downstream 85943 53531922 ~ 53537775 (-) False LOC110496522
XM_036953254.1 mRNA upstream 423 53628866 ~ 53647992 (-) False fam126a
XM_021572481.2 mRNA upstream 423 53628866 ~ 53649839 (-) False fam126a
XM_036953255.1 mRNA upstream 2584 53631027 ~ 53649839 (-) False fam126a
XM_036953256.1 mRNA upstream 2870 53631313 ~ 53649839 (-) True fam126a
XM_021572485.2 mRNA upstream 24530 53652973 ~ 53655476 (-) True si:ch73-345f18.3
TU1788031 other downstream 21024 53598650 ~ 53602694 (-) True G1562762
TU1786175 other downstream 975941 52644989 ~ 52647777 (-) True G1561279
TU1786137 other downstream 1266408 52356752 ~ 52357310 (-) False LOC110496491
TU1786055 other downstream 1373229 52249354 ~ 52250489 (-) True G1561167
TU1786046 other downstream 1440511 52179320 ~ 52183207 (-) True trak1b
TU1788090 other upstream 123963 53752406 ~ 53752683 (-) True G1562816
TU1788103 other upstream 245967 53874410 ~ 53875592 (-) True G1562828
TU1788095 other upstream 261266 53889709 ~ 53894949 (-) True mrpl3
TU1788544 other upstream 1010424 54638867 ~ 54652850 (-) True LOC110496860
TU1788592 other upstream 1032183 54660626 ~ 54665643 (-) True G1563253

Expression Profile