RNA id: XR_002469564.2


Basic Information

Item Value
RNA id XR_002469564.2
length 725
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110496535
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53738342 ~ 53741052 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggaggagactgaggTTCGAGAGAAATGAAAGTAAAACTATGACCCTTTCTCAATTGTATACTCCTCGAGtcatctctcctgtctcctcgtctccttctccaAACCCATATGAGGAGAAAGTCAGAAGGGAGAGAGACCTATAACTtactcatccaatgggttttgagaaggagacgatgagtggggagagaggacgcgaggagtatgcaattgagcaTCTCCTTATCACTAGGGTGCGGCAAGAGACGGGATGGGATAGACGGTAAACAACTTTTGTCAAATTGAAGTCGAACGATTTGATCCCCAGTCATCTCTAGCCTACTCATCAGGGGAGTCTAACCAACAGTCCAACGAACCAGTTGCATTTGATCTACAATCTTTAAGTCAACTATGGTTTTAACAGCGCACTGGTTCACGTTAGGTGTTGGTCAATATGCCTTTACAATGGGAGCAGCAACAGTCTCCACGCCTGCTCTGTTGGGTCTGGGGGTAATAGCTGCTGTCACAGTTGGCTGCTATTACGTCTACAAAACTGGTCATGAGAAAGAAAAGGGTAACCAGAAGAACGCATGATGTGACCCCGCCCCCTGCTGGAGGATCCAGACATCACAGCAGAACTCCACAACGCTAGATAATCATAGTTTGTGTGTTTCAAGGTGTTGTTGTGTTGAGAACATGGAACTGTGTTAAAAATTAAATATGCAGttgcattttcacatgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1787996 lncRNA downstream 7815 53703092 ~ 53730527 (-) True G1562729
TU1787982 lncRNA downstream 32742 53703765 ~ 53705600 (-) True LOC110496534
TU1787981 lncRNA downstream 32836 53703765 ~ 53705506 (-) False LOC110496534
TU1787984 lncRNA downstream 109920 53623858 ~ 53628422 (-) True tomm7
TU1787945 lncRNA downstream 226447 53510167 ~ 53511895 (-) True G1562682
TU1787994 lncRNA upstream 3340 53744392 ~ 53747035 (-) True LOC118941188
TU1788085 lncRNA upstream 6544 53747596 ~ 53747867 (-) True G1562811
TU1788089 lncRNA upstream 10783 53751835 ~ 53752081 (-) True G1562815
TU1788091 lncRNA upstream 13477 53754529 ~ 53782777 (-) True G1562817
TU1788110 lncRNA upstream 32364 53773416 ~ 53793921 (-) True G1562835
XR_002469563.2 mRNA downstream 32709 53703762 ~ 53705633 (-) False LOC110496534
XM_021572482.2 mRNA downstream 67840 53663547 ~ 53670502 (-) True aste1b
XM_021572483.2 mRNA downstream 67882 53663547 ~ 53670460 (-) False aste1b
XM_021572485.2 mRNA downstream 82866 53652973 ~ 53655476 (-) True si:ch73-345f18.3
XM_036953255.1 mRNA downstream 88503 53631027 ~ 53649839 (-) False fam126a
XR_005037512.1 mRNA upstream 3335 53744387 ~ 53747007 (-) False LOC118941188
XM_036953264.1 mRNA upstream 146085 53887137 ~ 53894981 (-) False mrpl3
XM_036953263.1 mRNA upstream 146085 53887137 ~ 53895002 (-) False mrpl3
XM_036953265.1 mRNA upstream 161196 53902248 ~ 53915395 (-) True cpne4b
XM_021572498.2 mRNA upstream 307812 54048864 ~ 54085680 (-) False atxn1a
TU1787983 other downstream 109920 53621900 ~ 53628422 (-) False tomm7
TU1788031 other downstream 135648 53598650 ~ 53602694 (-) True G1562762
TU1786175 other downstream 1090565 52644989 ~ 52647777 (-) True G1561279
TU1786137 other downstream 1381032 52356752 ~ 52357310 (-) False LOC110496491
TU1786055 other downstream 1487853 52249354 ~ 52250489 (-) True G1561167
TU1788090 other upstream 11354 53752406 ~ 53752683 (-) True G1562816
TU1788103 other upstream 133358 53874410 ~ 53875592 (-) True G1562828
TU1788095 other upstream 148657 53889709 ~ 53894949 (-) True mrpl3
TU1788544 other upstream 897815 54638867 ~ 54652850 (-) True LOC110496860
TU1788592 other upstream 919574 54660626 ~ 54665643 (-) True G1563253

Expression Profile