RNA id: XM_036953265.1


Basic Information

Item Value
RNA id XM_036953265.1
length 2024
RNA type mRNA
GC content 0.49
exon number 18
gene id cpne4b
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53902248 ~ 53915395 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagatgttctcTTCATTCATACCGTGAGGACCCTGATGTACTGTATCCCCTGTCTGCGCATGGCTTGAGGTGCAAGGCTCAGTACCTACTGCTTAGCTGACGtacggagagagggaaagaaagagagagagagagaagcgggaTGGGTGCAGAGTGTGTGAGGACGGCGAAGTCACTGTGATTCCGCCCAGCAGTGAAGTTTCCTTCATCTCACTGCTCTGCCCGTCTCTATCTGGTACCTGAGgtcCTGTGTGTGTCCAGCATGAGTAACATCTATGAGTCTGCAGAGGCGACCCTCGGCCTGTGCAACTCTTCCTGTCTGACCAAGGTTGAGCTGAGAGTGGCTTGTCGAGGGATCTCAGACCGAGATGCCCTTTCTAAACCAGACCCCTGTGTTGTACTCAAGATGCAGTCACACGGGCAGTGGTTCGAggtggacCGGACAGAGGTGATCCGTAGCAGTATCAATCCAGTGTTTTCCAAGGTGTTTCTGGTTGACTTCTACTTTGAGGAGGTTCAGCGTCTTCGCTATGAGCTACATGACATCAGCTCCGCTCACAATGGACTCAGAGACACAGACTTCCTCGGAGCTATGGAGTGCACGTTGGGACAAatcGTGTCCCAGAGGAAACTGTCCAAAGCGTTACTTAAACAGGGAAACACTACCAGCAAGTCCTCCATCACAGTAACATCAGAGGAGTTATCGGGTAATGATGACTACGTAGAACTCTCCTTCAGCGCTCGCAAACTAGACGACAAgGATTTCTTCAGTAAATCAGATCCGTTTTTGGAAATCTTCAGAATAAATGATGATGGCAGCGGATCACTAGTTCACAGAACTGAgacGGTGATGAACGACCTCAGCCCGGTGTGGAAGTCATTCAAGGTCTCTCTCAACACACTATGTAGCGGAGACCATGACCGCCAACTAAAGTGCACAGTGTATGATTGGGACTCCAATGGGAAGCACGACTTCATTGGAGAGTTCCAGACCACCTATAAGGAGATACGCACAGACCTGGAAGGGAGACAGaTGCAATGGGACTGTATAAACCCTAAGTACCAGGTGAAGAAGAAAAACTACAGAAACTCTGGTGTCGTCGTCCTCAACCACTGTAAGATCATCAAGATGTATTCTTTCCTAGATTACATCATGGGAGGCTGTCAGATCCAGTTCACAgtGGCCATAGACTTTACAGCATCAAACGGAGACCCCGGAAACAGCTGTTCTCTCCACTACATCCATCCGTACCAGCCCAATGAGTACCTGAAAGCCCTGGTGGCTGTGGGAGAAATATGTCAAGACTACGACAGtgACAAGATGTTTCCAGTTTTTGGGTTTGGAGCTCAGATCCCACCTGACTTTAAGGTGTCACACGATTTTGCCGTGAACTTTGATGAAGACAATCCGGAATGTTCCGGTATCCAGGGTGTGGTGGAAGCCTACCAGGCCTGTCTTCCTAAGATCCAGCTGTACGGACCGACCAACATTGCTCCCATCATACAGAAAGTTGCTTCTTCTGCCTCAGAGGAGATGCACACCATGGAAGCTATGgaGTATTTCATCCTATTGATCCTAACAGATGGAGTGATAACAGACATGGCTGACACTAGAGAAGCTATAGTACATGCTTCCCACCTGCCCATGTCTGTCATCATAGTAGGAGTGGGAAACGCTGACTTCAGTGACATGCAGATGCTGGATGGAGACGATGGAATACTCAGGTCCCCAAAAGGAGAACCTGTTCTCAGAGACATTGTCCAGTTTGTTCCCTTCAAAGACTTCAAACACgCGTCCCCGGCTGCGCTAGCTAAGAGTGTGCTAGCAGAGGTGCCCAATCAGGTGGTGGATTACTACAATGCCAAAGGAATCCATCCCAAATGTCTGTCTGACTACGACGAATCTACCAGACCCTTCAGCCCCtgaccacacacatatacacgtattcatcacacacacattaaacacacacacacattcacatgttATAAACAAAAACTAATACATactcacccatac

Function

GO: NA

KEGG:

id description
K24525 CPNE4_6_7; copine 4/6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1788137 lncRNA downstream 3887 53896780 ~ 53898361 (-) True G1562856
TU1788138 lncRNA downstream 5844 53895974 ~ 53896404 (-) True G1562857
TU1788135 lncRNA downstream 18092 53883077 ~ 53884156 (-) True G1562854
TU1788134 lncRNA downstream 19179 53881366 ~ 53883069 (-) False G1562853
TU1788129 lncRNA downstream 19179 53882050 ~ 53883069 (-) True G1562853
TU1788151 lncRNA upstream 9265 53924660 ~ 53925478 (-) True G1562868
TU1788149 lncRNA upstream 12326 53927721 ~ 53928165 (-) True G1562866
TU1788224 lncRNA upstream 90691 54006086 ~ 54008006 (-) True G1562930
TU1788179 lncRNA upstream 128703 54044098 ~ 54047835 (-) True G1562891
TU1788181 lncRNA upstream 141741 54057136 ~ 54244118 (-) True atxn1a
XM_036953263.1 mRNA downstream 7246 53887137 ~ 53895002 (-) False mrpl3
XM_036953264.1 mRNA downstream 7267 53887137 ~ 53894981 (-) False mrpl3
XR_005037512.1 mRNA downstream 155241 53744387 ~ 53747007 (-) False LOC118941188
XR_002469564.2 mRNA downstream 161196 53738342 ~ 53741052 (-) False LOC110496535
XR_002469563.2 mRNA downstream 196615 53703762 ~ 53705633 (-) False LOC110496534
XM_021572498.2 mRNA upstream 133469 54048864 ~ 54085680 (-) False atxn1a
XM_036953268.1 mRNA upstream 133469 54048864 ~ 54206719 (-) False atxn1a
XM_036953267.1 mRNA upstream 133469 54048864 ~ 54244154 (-) False atxn1a
XR_005037513.1 mRNA upstream 133469 54048864 ~ 54244154 (-) False atxn1a
XM_036953269.1 mRNA upstream 133469 54048864 ~ 54244155 (-) False atxn1a
TU1788095 other downstream 7299 53889709 ~ 53894949 (-) True mrpl3
TU1788103 other downstream 26656 53874410 ~ 53875592 (-) True G1562828
TU1788090 other downstream 149565 53752406 ~ 53752683 (-) True G1562816
TU1787983 other downstream 273826 53621900 ~ 53628422 (-) False tomm7
TU1788031 other downstream 299554 53598650 ~ 53602694 (-) True G1562762
TU1788544 other upstream 723472 54638867 ~ 54652850 (-) True LOC110496860
TU1788592 other upstream 745231 54660626 ~ 54665643 (-) True G1563253
TU1790620 other upstream 2566073 56481468 ~ 56488289 (-) True G1565122
TU1790882 other upstream 2812957 56728352 ~ 56737347 (-) True LOC110496560
TU1792637 other upstream 4112116 58027511 ~ 58027790 (-) True G1566899

Expression Profile