RNA id: XM_021572497.2


Basic Information

Item Value
RNA id XM_021572497.2
length 3324
RNA type mRNA
GC content 0.47
exon number 13
gene id dync1li1
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53916292 ~ 53928304 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCACGCCCAGTACTGTGCGTTACATCCGGGTCTTTGTTGGTTGGCAGCAGTGAAGATGGCGGCGTCAGGGAGGAGTACATTATTATCCTCCAACAACAGTGGACTAAACAGCACAGCCGAACAACCAAATACTGAAGACGAAGATGGACAGGATTTATGGTCTGCTATTCTGAGCGAAGTATCGACTCACTCCAGATCTAAACTACCGTCCGGGAAAAATGTGCTGGTCATGGgggaagTGGGTTCGGGGAAGACCACTCTGGTTGCTAAACTACAGGGTGTGGAGGACTTCCTGAAGGGGCGTGGCCTGGAATACCTCTACTTCAGTGTCCATGACGACGACATTGACGacCAAACCAGGTGTAATGCCTGGGTGTTAGATGGGGATCTGTACCATAAAGGTCTGCAGTCTGTTGCTGTGCAACGAGAGGCGCTTGGTGACTCGTTGCTATTGGTTACTGTGGACCTGTCGCGGCCGTGGGTCGCCATGGAATCGCTTCAGAAGTGGGCGGCTGTCGCTAGGGAACATATCGACAAGCTCCGGGTCCCCCCAGAAACACTGAGGGAGCTGGAGAACAGAAtggccAGACAGTTCCAGGAGTATGTGGatcctggctgggaggagagcGCCCCccagaggaggagtgaggaggaggagaacgttctgctgccgcTCGGcgaaaacacactcacacacaacctgGGACTACCCATGGTGGTGGTCTGCACTAAGtgcgATGCCATCAGTACGTTGGAGAAGGAGTATGACTACAAAGACGAACACCTGGACTTCATTCAGTCATACATCAGACGCTTCTGTCTACAGTACGGGGCGTCTCTGCTGTATACGTCGGTTAAGGAAATGAAGAATGTGGATGTTCTGTATAAATACCTGGTTCACAGACTCTACGGTTTCCCCTTCCACTACCCTGCTCAACTGGTGGAGAAAGACACAGTCTTCatTCCGTCAGGGTGGGATAATGAAAATAAGATATCTATCCTCCATGAGAACTTCCAAACGCTGAAACTAGACGACATCTTTGAGGAGGTCATCGTCAAACCGCCTGTCAGAAAGTTTGTTCATGAGAAGGAGATTCAGGCTGAAGATGACCAGGTGTTTCTGCTCAAGCTGCAGTCGCTGCTCTCCAAACAGCCTCCTGCATCTGCCGGACGACCAGGGgagtCCAGCAGTAGTAGAGGTCCCAGTGGTTCTCCCAGGACCAGTAATCGTTCAGCTGCAGCCAACGTTGCTAACACCATGCCCCAATCAGGTCAGACCAGTGAGGGGGTGCTGGCTAACTTCTTCAACAGTCTTCTGACCAAGAAGGCCGGAGCATCGCCACCGGGCAACAGCACACCAGGGACTGTTCGCAAGtcaggttcTAAGCTGGGTCTGAGTGATGTCCAGGCAGAGTTGGACAGGATCAGCTGCAGAGAGAATGATGAGACCAACAACAGCAACACTAACAACCCTAACCCCAGTACTGAGAACAACGAAGAACAGACATGAACAgaccacctccctcttcctcccccctacCTCACCCCCCCAGACCATACGTGAAGAGAACAAACCTCACCCTCCACCCCCCCAGACATACCCCAGACCAGACCACATGAAAAACCCACCTCCCCTACCTTACCCCCTCCTCACACCCCCAGGCCATACATGAAGAGACCAGACCTCACCCTCCTCCCATTCTCACGTCTCCTGacctcccctcctcaccccccaGTGAGACCACCACATACCAGACATGAAGACACGTCAGCCCTACCTCATTCCCCAGACCATACATGGAGACCAGACCTCACCCCAACAGGCCAGAACAGATTAGATATGAAGACCTTCTTCAGGACGGAGAGGtatggggatggagagggagggaggaggaagaagagagagatggagggagagtgggagcaggagggggagagagatggacaggtatggggatagatggagagagggagcagggggagagagggagcaggggggaaaaatatatattcccCTTTCACCAGATGAGGTATTTAGGGTGATCTTGATACTGTAGGATATATTGAAGGATTTATGTATATAGTTGACTGAGATACTGtaggaattgtgtgtgtgtgtgtgtggagaatgGAGAATGTTAGACAGAGCCATGTAAAGAGAGAGTTTGGCCCTTGAGGTTTCAACCAAAAAGCAGCAATCTTCTGAGATGTCACATAACTCTATGGCAGACATATTGACAGAATCATAAACCAAGTTCACTAGTATAACTGACAGAATCATAAACCAAGTTCACTAGTATAACTGACAGAATCATAAACCAAGTTCACTAGTATAACTGACAGAATCATAAACCAAGTTCACTAGTATAACTGACAGAATCATAAACCAAGTTCACTAGTATAACTGACAGAATCATAAACCAAGTTCACTAGTATAACTGACAGAATCATAAACCAAGTTCACTAGTATAACTGACAGAATCATAAACCAAGTTCACTAGTATAACTGACAGAATCATAAACCAAGTTCACTAGTATAACTGACAGAATCATAAACCAAGTTCACTAGTATAACTGACAGAATCATAAACCAAGTTCACTAGTATAACTGACAGAATCATAAACCAAGTTCACTAGTATAACTGACAGAATCATAAACCAAGTTCACTAGTATAACTGACAGAATCATAAACCAAGTTCACTAGTATAACTGACAGAATCATAAACCAGGTTCACTAGTATAACTGACAGAATCATAAACCAAGTTCACTAGTATAACTGACAGAATCATAAACCAAGTTCACTAGTATAACTGACAGAATCATAAACCAAGTTCACTAGTATAACTGACAGAATCATAAACCAAGTTCACTAGTATAACTGACAGAATCATAAACCAAGTTCACTAGTATAACTGACAGAATCATAAACCAAGTATTAGAACTATAACAAAGTCCttatggatggatgaatggaaggTTCATCCACTGTGGCAGGCAACAACATGGCTTCCGGCCGGCTCTGAAGTGGGCCAAACTCTCTGTGACTGCTTTTAGATGTAGATATAGATGGGGAGGGGGTGTAGTTGAGCTTTATTTGTACAGTTAGGAGAAGCACTAATGGTTTATAACCCAATAGTTAAtacaaggagggagggatggccgGGGGCACCTGGAAAGTGTACAGTCCCTTTGTCTTGCTGTAATCTGATTGGTCCGTTATTTCAGAACTGTAACCTGATTGGTATGTTATTTAATTGTTCTGTGGTGGCATTTGTATCATCAGGTCTATAATGAGTCAAATAAAGGTGTATTTATTCTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1786961 lncRNA upstream 729 53915148 ~ 53915563 (+) True G1561891
TU1786934 lncRNA upstream 3572 53912243 ~ 53912720 (+) True G1561864
TU1786908 lncRNA upstream 21344 53887139 ~ 53894948 (+) True G1561843
TU1786923 lncRNA upstream 47886 53855267 ~ 53868406 (+) True G1561853
TU1786927 lncRNA upstream 124053 53791692 ~ 53792239 (+) True G1561857
TU1787032 lncRNA downstream 115891 54044072 ~ 54053417 (+) False G1561943
TU1787034 lncRNA downstream 115891 54044072 ~ 54050752 (+) True G1561943
TU1787058 lncRNA downstream 156687 54084868 ~ 54097923 (+) True G1561956
TU1787089 lncRNA downstream 190290 54118471 ~ 54118930 (+) True G1561987
TU1787091 lncRNA downstream 193550 54121731 ~ 54144598 (+) True G1561989
XM_036953260.1 mRNA upstream 33800 53812083 ~ 53882492 (+) False LOC110519664
XM_036953259.1 mRNA upstream 35829 53812084 ~ 53880463 (+) False LOC110519664
XM_036953261.1 mRNA upstream 35829 53812085 ~ 53880463 (+) False LOC110519664
XM_036953262.1 mRNA upstream 35829 53812087 ~ 53880463 (+) True LOC110519664
XM_036951071.1 mRNA upstream 185876 53713836 ~ 53730416 (+) False LOC110514975
XM_036953266.1 mRNA downstream 55456 53983637 ~ 54008038 (+) True LOC110496857
XM_036953270.1 mRNA downstream 94101 54022282 ~ 54036714 (+) False gmpr
XM_036953271.1 mRNA downstream 94418 54022599 ~ 54036714 (+) True gmpr
XM_036951072.1 mRNA downstream 326712 54254893 ~ 54258383 (+) True LOC118940998
XM_036953274.1 mRNA downstream 394636 54322817 ~ 54409921 (+) False LOC110496546
TU1786926 other upstream 39362 53872173 ~ 53876930 (+) True G1561856
TU1786912 other upstream 75421 53817164 ~ 53840871 (+) False G1561845
TU1786915 other upstream 90043 53817164 ~ 53826249 (+) True G1561845
TU1786914 other upstream 93429 53817164 ~ 53822863 (+) False G1561845
TU1786837 other upstream 191628 53720318 ~ 53724664 (+) False LOC110514975
TU1787303 other downstream 581577 54509758 ~ 54510746 (+) True LOC110496545
TU1788910 other downstream 1210467 55138648 ~ 55139231 (+) True G1563547
TU1789919 other downstream 1980069 55908250 ~ 55908934 (+) False G1564470
TU1790095 other downstream 2100757 56028938 ~ 56169203 (+) False LOC110496862
TU1790119 other downstream 2122407 56050588 ~ 56051793 (+) True G1564638

Expression Profile