RNA id: XR_005037513.1


Basic Information

Item Value
RNA id XR_005037513.1
length 7902
RNA type mRNA
GC content 0.51
exon number 6
gene id atxn1a
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54048864 ~ 54244155 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcactctcgaGAGATCTCTGAAGGTGGGGGCATAGAGCAGTACAGCTATTAGCTCCGAGCTGCAGACATCATTCCGAGTAGAGGGCAGACGATTCCATCGTCAGCGCAGGAACAGGGAGCCCTGGCAACAATAAGAGACATACTCTTACCAGACCATTACACCTTACAggaATGGTGAAAGCACCTGGAGCGAGACAGACGcggacagatagagaggggatCTGGGAGCAGGCTCCCCTCAGACTAGTGaccgagagaaacagacacagcaGCAGTTACTGCAGTACTGACTGGTCCCCCTGTCTTCAACTGAACCACAGTACTGACTGGTCCCCTGTCTTCAACTGAACCACAGTACTGACTGGTCCCCTGTCTTCAACTGAACCACAGTACTGTCTGGTCCCCTGTCTTCAACTGAACCACAGTACTGACTGGTCCCCTGTCTTCAACTGAACCACAGTACTGACTGGTCCCCTGTCTTCAACTGAACCACAGTACTGACTGGTCCCCTGTCTTCAACTGAACCACAGTACTGACTGGTCCCCTGTCTTCAACTGAACCACAGTACTGACTGGTCCCCTGTCTTCAACTGAACCACAGTACTGACTGGTCCCCTGTCTTCAACTGAACCACAGTACTGACTGGTCCCCTGTCTTCAACTGAACCACAGTACTGACTGGTCCCCTGTCTTCAACTGAACCACAGTACTGACTGGTCCCCTGTCTTCAACTGAACCACAGTACTGACTGGTCCCCTGTCTTCAACTGAACCACAGTACTGACTGGTCCCCTGTCTTCAACTGAACCACACTACTGACTGGTCCCCTGTCTTTAACTGAACCACAGTACTGACTGGCCCCCTGTCTTCAACTGAACCACACTACTGACTGGTCCCCTGTCTTCAACTGAACCACAGTACTGACTGGTCCCCTGTCTTCAACTGAACCGCTTCCTGTTTCCTCCCACCCGGACCACTGGACAAGAACCAGGCCCAACCGCCTCCAACACTCAGaggtGGTGCTGGGGCCCTGAGAGGAAGTAGTGCTTCGTTCTGACTGGAGGATCCCTCCATGGGCTGTACCACCCGTTGACACACAGGAGAGATCAGAGGAGCTCCACTGAATGAGGTTCCCGCTGCCATCCAGGAGGCTCGCTCTCAGAGGGAAATGATTCCGCATGAAGTTGACGGAcggctctcttcctctctccacggAAACGGCAGGTGTGACTCTCGCTGCTCCCACGACAACAGCAGGTGTGCCCCTCTCTGCTTCTCGCTGAGCCAGAGCCAGGCGTCCGACAGACGCTGagctacaggacaggacagaccccctccgtccctctctactccctccacccTACCCCCTCTAACTTACCCCCTACCCCCTCTAACTTACCCCCTCCAACCTTCCAGTCCTCTGACCCCAGCCACCCACACAACCAGCAGGAGGGCCTATTCTGTCAACGAGGAAAGgccaagagagagagtgagggagacagCCAAAGACAGGAGTGAAATAGAGAGTGAACGAGGGAGAGACCGAGATAGGAACAGAAAGAGAGTTCTAAAGTGATAGTGTGAGAGAGACGAGCCAAGGCTAGTGTATGTAACAGGAAGTTGATAGAGAAAAGATAACAGTATGAAGTCCAACCAGGAGCGCAGCAACGAGTGTCTGCCCCCCAAGAAGAGAGATTTCCCAGCTAGCACTGTGGACGAGAGGCCCCTGGTGATGGCGCCTGCTAGTGAGAGCCAGCGCGGAGAGAACCTGGCATGGCTGGCCAGCGTAGCCAGCGGGCACAACAGCGGGCACAATAGAGACAGTGGCGGAGGTGGCCTCGATGGCAGTAGAGGTGGGCAGCGTATCAGCACTCCCATTGAGTCTGACGGGCCACAGTACAAACCGCTATGctccaccatcaccacacacacagacttcctGGTCCCTTCCTCTATctgttccatctcctcctcctcctcttcatcacatCAGTCCAGAGTGGTGACCACATCCCTCCCTGCCATGTACACCTCTGCTTTGTCCCAACCAGGGGGGACGATCCAGTACACCCAGCTGCCCCCCAATGTCCAGTTCATCAGTTCCCCTTACACAGGGCCCTACGCTGGCTACAtctcctcccagctcctctctccccctccacccacctccaCATCCCAACGCTCCCACCCTGACCCATACCccaacaccaccatcacctccCAGTCCCAgatctctggttcctctctgagCCTGGCCCCCCAGACTGCTCCCTCGCCACACGGTGGGACCCACcacctgcccctccacctgcACTCCCACCCCCACCACACCCTGGCCCTCAGCGGGGGCTCCCAGGTGCTGGTCCAGTACACAGGCCCcggccctgaggggcccctgacTAAGAGAGAGGAGGGCCGGCCCAGGGAGTTGCACAATGGAGATCAGAGGGGCCGCTATGAGAGAAAGGAAAACAAAGGaaccccctcctcttcttcctcctcttcctctcagtACCACCAACTCCACCAGCAGCAGAGCGCGCAGCATCACTATGAGGCCTACACTTCCCATGATGCATCAGGGCAACGGACCTCTCTAATGCTAGTGCCCAACAGCCGCGGAGGACCAGACAACCACAGCCCCGACAAACTACGGCCATCCGCCGCCTCGCACACAGAGAAAGGCAGCCTCCTTCTGGGTAAACCTGTGTCCtgcaccccctcctcctcctccacgttCACCTTCCCCCCTCCGCTCAGTGTGGAGAGTCTTAAGGCGGCCGTCAGCTCCCTGTCCCCTCACACCCACACAGTCATCCAGACCACACACAGCGCCAGCGAGGCTTCACCCCTCTCCCTGGGCCAACTCTCAACCAACACCAACTTCTACCAGGCTGGCCCCGGCGGGCAGCCCATCATCGGCTACCTGGCTGGGAGTGCAGGAGGGCAGCGGTACCACACCAGTCTGCCCCAGCACCTGCTCATCCCAGGGGCCCCAGGGTCTCAACCTATCATCATCCCCGTCAGTGGGGCCGGGGTCACCAGCCTGGAAGCTGGCCATGCTGCCCACATAGCCACTACAACCCAGCCACAGTCCTTCCCCACCACGCTACCCCACACTTACTTCACCAACActaccaaccctaaccccaaccctaaagaTGAGCATCTATTTGAGGTCCCGGcgccctacccccctctctcccaccctgccGGGGTTGGAGGCACTGTGGTCCAGGCCCAGCTACACCTCCCAGTGGTCCCAGCTCCCACAGCCCCCTCCTCAGCTCCCTCCTCGGCCCCGTCGCTGCCTCCCTACTTCATCAAGGGCTCTATCATCCAGCTGGCAGACGGGGAGCTGAAGCGCGTGGAGGACCTGAAGACGGAGGACTTCATCCAGAGCGCTGAGATCAGCAGCGAGCTGAAGATAGACTCGTCCACTGTGGAACGCATCGATGGCAGCCACACGTCCAACTTCGCCATCGTACAGTTCTCCGTGGGTGAACACCGCGCTCAGGTGAGTGTGGAGGTGCTGTTGGAGTATCCCTTCTTCGTATTCGGCCAGGGCTGGTCATCGTGCTGCCCGGACCGGACCACTCAGCTGTTAGAACTACCCTGCACCAAGCTCTCAGTGGGGGACGTCTGCATCTCCCTCACCCTGAAGAACCTGAGGAACGGCTCCCTGAAGAAGACGCAGCAGACCCAGAACCAGGCTATTGAGATCACTACCAGCTGCAATATGGGCTCCATCCACGGCCCCCTCAAGTCCTCCAGGTCAGCCAGGCACGGGGAGCAGGAGAACGGGGTGGGCCAGAGAGGCTCCAGGAGTGGATGTGGGAGAGTGGTGGTTGGAGTAGGTGGAGGTGTTCAGATCGCCTCAGAGAATGGGGAACTGAGGTTCGGCGCCGGGGGAGAGGCCAACTCGAAAGGAGGCCAGCCTGGAGATTCAGAATCTAGTGGTGGTGCCGCCAAGCCGGTGAGCCGCAAGAGGAGATGGTCGGCCCCCGAGGGCCGTAAGGTGGAGAGGAGCGAGAAGGAGCCCCCGTTGACTCTGCCCAAACCTTCCTTTATCACTCAGGAGGTAAAGATCAGCATCGAAGGCAGGTCAAATATAGGCAAGTAGTGAAGGCAGGAGATTTAAACAAGACTGTTAATTCACGTATGGGATTGGATGGAGATTCaaaaaaggaaaagaaagaaagaaagcccACATAAAATGTTAATTTTAGAttgttttcttgtttttattttctaCCCGGATTTCTGTACTGTAGGCAAAATTTTACCCAGTACTTACATGTTATCACCTTACATTAAGTTAAGTTGGTAATAACATTGTAATAGATGCGTTCGGTATTAGGTAAACAAGCAACCTGTGCAATTGTTTAGGTTTTTTTTCCCACAAATCTCTGGACGAGGGGTTTTGTGAAGTTTTGTAGATGTTTTATTGGTGGTTTTGTGGCACACAAGAGCACTGCGTGATACCTCTCTGGTCATGTGACGGCTGCAGGTGGACAAATAcataaaatgaataaaacatgtaGTTAGCTTTCCAATCGTGGCTAGGGGCATGACTAAACGGGTGTAATGTAGACCCGTGAGTGATGTCACTTCCTTTGTGATGTCACTTCCTGATACAGGCACTACTGACGAGAGTGTTCAGGAGGTCTGGACTTAATCACTCTCGACGCCACCCAGTTGCCATGGTGGCAGACTGAGTTGATATGATGTCATTTATCCCAAGTGACTCAAGACGTCTTTAGATAAGACAGTTCAAAAAGTGTCTGTAACCATTTTAAACCCTCATGACAACACATCTAATCCTAAACAAGGGGTCACCGGAAGCCTCTCATCCATCTAGACCACTTAGCCAGGTGATGTCATCCAGCAGGCCAGCCCAGCCAGGTGATGTCATCCATCTAGACCACTTAGCTAGGTGATGTCATCCATCTAGACCACTTAGCCAGGTGATGTCATCCAGCAGGCCAGCCCAGCCAGGTGATGTCATCCATCTAGACCACTTAGCCAGGTGATGTCATCCAGCAGGCCAGCCCAGCCAGGTGATGTCATCCATCTAGACCACTTAGCTAGGTGATGTCATCCATCTAGACCACTTAGCTAGGTGATGTCATCCAGCAGGCCAGCCCAGCCAGGTGATGTCATCCAGCAGGCCAGCCCAGCCAGGTGATGTCATCCAGCAGGCCAGCCCAGCCAGGTGATGTCATCCAGCAGGCCAGTCCAGCCAGGTGATGTCATCCAGCAGGCCAGTCCAGCCAGGTGATGTCATCCAGCAGGCCAGCCCAGCCAGGTGATGTCATCCAGCAGGCCAGCCCAGCCAGGTGATGTCATCCAGCAGGCCAGCCCAGCCAGGTGAGGTCATCCAGCAGGCCAGTCCAGCCAGGTGATGTCATCCAGCAGGCCAGCCCAGCCAGGTGATGTCATCCAGCAGGCCAGTCCAGCCAGGTGAGGTCATCGAGCGGTGCCAGTGTGCCTCTAGAAAGAGGGAACTCTTCCTTCCTTTGTTATGTTTTGCTGACACTGATCTCTTtatgttattatttttgtttttgaaacatttttattttaactttttAATGTAGTTTTGCTTGTCAATTTTGACCTTTCATCCTATCTTGCCCAGTGAGTTGATAATTATATATTTGATGATTGTCTAGAACTTTGAGATCAGGGGTCACATGTATGTACGTATAGTTTGAACCAAGGTGGTAAAGATAAATGTCTATGTTATTCCTTTATACCCTAACGATGCATACATTTGCAGTCACACTGGGTTGAAATGAACTATGAAAATAGGAAGATGATTATACTCCATCCTTTTACTTGGTGCAACCTTTTGATTTTGTATTcttagggagagagaggcagaaagaaagtggcaccctatttcaacatagtgcacgacttttgaccaaggccctatCTCTATGagcccgggtcaaaagtagtgcactatgtaaggaagaggttgccatttgggactctgTCAGAAAGTCAGTGTTGAGtctttagagaggagagggacaggatgtTGTGTTGAAGCACTTTCATTTGCACACCTGTCACACTCACCAACTGATGATATCACAACtattattcttattattattattattgatctCTTCATTAACACAGTACTgtatgtttttgttattttgactTAAGGAAGAAGTAGAACTCTGTGGCAGCAGCACTTTTGAACGATGAAGGGGGTCATGTTGATGTCTTGGTGTCTTGGGGTCACACTACCTTTGAAAGGGATGAATGTGACATGTGATGGAGTGAGTGCCagttaggggagggagggaaagagagaagaggaataTGGAAGAAGGTATAATATCAGAGAGTGCTTTTTGTTGAGGCACTTTGCTCAAATCAAAACATGCTATTCAAAATATGCGTGCGGTCAAAAAATGTACCTTTTGACACATAACTGCCTTGTCAAGGATATCACAAGTCAATGAAATCCAAAAGAAGAATGGGTAAAGAATGGGAATAATGGTGGGAATGTCCAGGTATTTTGTGGACGAGATTGAGAGACAGTTATAGATGCTCTGGCCACAGAATTTCTGAAGGGCGTCATATAcataatgtatgtatgtaagtgTGCATGAATGCAGGTATGTGTtagtgcacacacactcacacagacacacacacggaatacagtacccacacagacaggcactTTCCTAAAGGAGAGGACTGTATGTATTTCATACTTGTTGATATACGTTTAGTATGTATACAAATACTTTTGTGGCATAGATATTTCCCCTTGATGATGTAGAGAAGCCAAGATATTTGAGTAGCAGACGAAGATGATAGTTAGTCTCAGTGCTCTgtgcagtgtgtgtttgttggcgtgtgtgtgtgtacgtgtgtttgtatatgtgtatAGAAATATCATATAACTTAATATGATATATCCAATGTAAAATGTCCAGTGTTTCTGTTTTTGGAGTTCTACTTAAGAGAATCTTGCAATTTGCACATCTGGAGAGGTAGTCAGTTGGGTGACATTACTTTTTGACTGTGTTCAAAATATACTTTCCTCTATACAGTGcactggccaaaagtagtgcactatatagggtataggatgccatttcagacacaactATGTTTTCAGCTAGGTTGCACATACACACCGAACTGAAACCCCATTTTACTGAATTGTAGCAGTTATTTAACAAGTGTGATCCATGCTGATTGTCTCCaatgctctctgctctgctcctcaTTGGACCACACCTGTGGCATGTCCAAGTCCCGCCCACTTGTTGCGTGTTTGGTTGAGAGACATTGTGGAGCCGGGGGCGGGGCCACCAGCAGGTACACCTGTTGAGCTCTCTGATTGGCTGCGTTTTTCAGGTGTGTTTAGGTGGTAGAAGATGTGGCAGAGAACTAGAAGTATGTAGAAGTTGCTTCTAACTACTGCTCTAGGTTCAAATGTTTAGTTCATCCTGCTAatggttagtgttaggagtgGGTGCaggccagaggaggctggtgggatgagctataggaggacgggttcATTGTAATTGCTGGAATattggaacagagtcaaacaggTGGTTTCcatgtttgatactgttccataTATTTCATTTCATCCATtccaatgagcccgtcctcctatatctcctcccaccagcctcctttgGTGTAggctaatctgatcctagatctgtggttaagaACAACTCCTACGTGGACTGTGGTGAAATAGGAGGATGGATGCGGGTGATCAGCGTAGTGATGGACGGATGGATGTGTGacttggatggatggatgaagacAGATGGGTGATGGTGAGTGAGTATACACCCCGTGGAAAatgctttattttttataataaaacaGGGTTTCTCAGATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1788179 lncRNA downstream 1029 54044098 ~ 54047835 (-) True G1562891
TU1788224 lncRNA downstream 40858 54006086 ~ 54008006 (-) True G1562930
TU1788149 lncRNA downstream 120699 53927721 ~ 53928165 (-) True G1562866
TU1788151 lncRNA downstream 123386 53924660 ~ 53925478 (-) True G1562868
TU1788141 lncRNA downstream 140589 53908067 ~ 53908275 (-) True G1562860
TU1788371 lncRNA upstream 71971 54316125 ~ 54317470 (-) True LOC118941189
TU1788411 lncRNA upstream 124967 54369121 ~ 54371307 (-) True G1563100
TU1788546 lncRNA upstream 313390 54557544 ~ 54567610 (-) True G1563217
TU1788572 lncRNA upstream 362601 54606755 ~ 54609700 (-) True G1563234
TU1788596 lncRNA upstream 421575 54665729 ~ 54666665 (-) True G1563255
XM_036953265.1 mRNA downstream 133469 53902248 ~ 53915395 (-) True cpne4b
XM_036953263.1 mRNA downstream 153862 53887137 ~ 53895002 (-) False mrpl3
XM_036953264.1 mRNA downstream 153883 53887137 ~ 53894981 (-) False mrpl3
XR_005037512.1 mRNA downstream 301857 53744387 ~ 53747007 (-) False LOC118941188
XR_002469564.2 mRNA downstream 307812 53738342 ~ 53741052 (-) False LOC110496535
XM_021572499.2 mRNA upstream 36390 54280544 ~ 54286577 (-) True LOC110496543
XM_021572500.2 mRNA upstream 70070 54314224 ~ 54315645 (-) True LOC110496544
XM_036953272.1 mRNA upstream 71970 54316124 ~ 54317624 (-) False LOC118941189
XM_036953273.1 mRNA upstream 71970 54316124 ~ 54317624 (-) False LOC118941189
XM_036953285.1 mRNA upstream 281539 54525693 ~ 54534269 (-) False tpd52
TU1788095 other downstream 153915 53889709 ~ 53894949 (-) True mrpl3
TU1788103 other downstream 173272 53874410 ~ 53875592 (-) True G1562828
TU1788090 other downstream 296181 53752406 ~ 53752683 (-) True G1562816
TU1787983 other downstream 420442 53621900 ~ 53628422 (-) False tomm7
TU1788031 other downstream 446170 53598650 ~ 53602694 (-) True G1562762
TU1788544 other upstream 394713 54638867 ~ 54652850 (-) True LOC110496860
TU1788592 other upstream 416472 54660626 ~ 54665643 (-) True G1563253
TU1790620 other upstream 2237314 56481468 ~ 56488289 (-) True G1565122
TU1790882 other upstream 2484198 56728352 ~ 56737347 (-) True LOC110496560
TU1792637 other upstream 3783357 58027511 ~ 58027790 (-) True G1566899

Expression Profile