RNA id: XM_021572499.2


Basic Information

Item Value
RNA id XM_021572499.2
length 2299
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110496543
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54280544 ~ 54286577 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACTCAGATTAAACTAGGATGAGTAACTGTAGCAAGAGATTAGCTGCTGGGGAAAGACAGTTGACGTTTTAACGGATTTAAGTGAGATCTAGAAGGGATTTAACCATGGCCACAGCCAGTACTACACAGAATGGGCCGACTTCGCGTTCCGAGGAGAGCCAAGAAGCGCAAACAAATGTCAACGCCACAACTGAATACTGCGCAAAGTTACAGGAATGGATGTGGCAGTACTACTGGGGCTATGCAAATTGGCAAAACTGGATGACTCTGACTACGTTTCCTTTCCCCCCGTGCAATTTTCCCGTAGCTGGAAACTATCAAGCACCGACTGGAACTCCATGGCCCGCTGGACAACCAACTTTAGATGCCCGATATGGGTACAACTATCCGGGAATAGGGTACCCCTTTCCATTCCCTGCGCCCCCGACTACGGGGTTTCAGACAGGGCAGCAGATGACAGCTGGGACATTGCCTCATGATGCAAGGCCAGTGCAACAACAGAACGGAAACGCACCTCAAGCAGGTCGGGAATACACCATCCCTTCTCCCCTCCACAGATTCCTAGCAGAGACTGTGGacttctttattttattttgtgtcaaGGCAACCATCATCCTGTGGATTATGCACCTTAGTGGCATGAAGGACATCACTAAGTTTGTCACCCACTTCATAGTTGAGGAGATAGATGAGAACACGTCTATGGAGGACCTGCAGAAGATGATGGCAGTAGCTCTGGTCTACAGGGTGCTGGTCTGTTTCTATGAGatcaTCTGTATCTGGGGGGCGGGCGGTGCCACCCCAGGGAAGTTCCTCCTTGGTCTTCGGGTCGTGACATGTAACAGTTCAGTCCTGGTCCGACCTAACCGCGTACTGGTGGTACCGGCATCTAACGTCACCCTGTCAGCTTCCACGGTGCGGGCGTTGAACAAGAACTTCTCCATTGCCTTCCTGTTCCCCGTCTTCattatcctcctcttcttccaacaCAACAGGACTGTCTATGACGTGGTAGCTGGTACCATCGTGGTGCAGCGCAGAGGGGCCAGATAAATTACCCTATAGTTGATCTGAACAGGGTCCTGTTCATAGCATAACACTTTGCAACACAAAATGTAAATCTGTGTTCTTATTGGACATGTTCAGGTACCTTCCTGTTTCATTAAGTATGAAAACATTTCTCTCTATTGAACACAACAGACCTTGGGCTTCTAGAACTGAACAGAAGGCCTGTAATACAGAACTAGGCCTCAGACTGAAACCCACTCAGGACAGATTGGAGTTTGTTACAACGTTATAAAGAAGTCTCATGGGGAGGCCGCAGAACAGAACATCATGGTTGTTTTATCGTCTTCATTCATAAAGTATGGTTACTAAACCTTTCCCTAGTTACCACATAGAATTTGACAGCTGAATATTTCAATGGAATGTTAGAGAAGTTGTATTAATGTACGTGATGTTTATATGCAGTTGTAGACTGACTCGTATATGGATAAGGGCTTTTTCCAGGTCAAGATGAAaggtgaaatgttttttttttttaacctttatttatctaggcaagtcagttaagaacaaattcttattttcaatgatggcctagaaacagtgggttaactgcctgttcaggggcagaatgacagatttgtaccttgtcagctcgggggtttaaacttgcaaccttccggttactagtccaacgctctacccactaggctaccctgccaccccatgtgACGGGGTTGTTTGCACAGTGGCCATTCCGCATTGTCTAAATGGAACTAAAAACTGTTACTTGGGTCTTTTTTAATTTACTGAACTCCTCTGAATTTTGCCTTGAGGCTGTCTGTCTTTCTGGGCCACATTTTCAGCAGCAGGTTTGCATTCTACTGTCTAGTTCTTTTTTCACCAGAGCCAGACTCAGACATTTGTCATTCTGATCCAAATCACAGATTAGAATCTGGACATTCCAGACTCTTCCTCACAAataggaggttgtgtgtgtgtgtgtgtgtgtgtgtgtgcaggaatgCACACCTCTGCTATGTCTGGACTCACAAACCATGACTCAGGGTAGTCTATTTGACAATTCATCCCTTACACAGGCTAACCTTAAATGCACGAGTGTAAATTACCACCCTGAAGTGAGTTTTCAATGTAATTATTTAcactactgtacacactacactTAATGTACATCTCTCATACAGCATGCACACACGGTACATGTTATAGTTCAGCATATGAATACATGTCCAGGACTTCTATTTTGTTATAGTAAATGTATCATGGGTCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1788181 lncRNA downstream 36426 54057136 ~ 54244118 (-) True atxn1a
TU1788307 lncRNA downstream 45102 54235048 ~ 54235442 (-) True G1563002
TU1788324 lncRNA downstream 64782 54215427 ~ 54215762 (-) True G1563015
TU1788280 lncRNA downstream 156762 54123462 ~ 54123782 (-) True G1562978
TU1788179 lncRNA downstream 232709 54044098 ~ 54047835 (-) True G1562891
TU1788371 lncRNA upstream 29548 54316125 ~ 54317470 (-) True LOC118941189
TU1788411 lncRNA upstream 82544 54369121 ~ 54371307 (-) True G1563100
TU1788546 lncRNA upstream 270967 54557544 ~ 54567610 (-) True G1563217
TU1788572 lncRNA upstream 320178 54606755 ~ 54609700 (-) True G1563234
TU1788596 lncRNA upstream 379152 54665729 ~ 54666665 (-) True G1563255
XM_036953269.1 mRNA downstream 36389 54048864 ~ 54244155 (-) False atxn1a
XM_036953267.1 mRNA downstream 36390 54048864 ~ 54244154 (-) False atxn1a
XR_005037513.1 mRNA downstream 36390 54048864 ~ 54244154 (-) False atxn1a
XR_005037514.1 mRNA downstream 36409 54105015 ~ 54244135 (-) False atxn1a
XM_036953268.1 mRNA downstream 73825 54048864 ~ 54206719 (-) False atxn1a
XM_021572500.2 mRNA upstream 27647 54314224 ~ 54315645 (-) True LOC110496544
XM_036953272.1 mRNA upstream 29547 54316124 ~ 54317624 (-) False LOC118941189
XM_036953273.1 mRNA upstream 29547 54316124 ~ 54317624 (-) False LOC118941189
XM_036953285.1 mRNA upstream 239116 54525693 ~ 54534269 (-) False tpd52
XM_036953284.1 mRNA upstream 239116 54525693 ~ 54534270 (-) False tpd52
TU1788095 other downstream 385595 53889709 ~ 53894949 (-) True mrpl3
TU1788103 other downstream 404952 53874410 ~ 53875592 (-) True G1562828
TU1788090 other downstream 527861 53752406 ~ 53752683 (-) True G1562816
TU1787983 other downstream 652122 53621900 ~ 53628422 (-) False tomm7
TU1788031 other downstream 677850 53598650 ~ 53602694 (-) True G1562762
TU1788544 other upstream 352290 54638867 ~ 54652850 (-) True LOC110496860
TU1788592 other upstream 374049 54660626 ~ 54665643 (-) True G1563253
TU1790620 other upstream 2194891 56481468 ~ 56488289 (-) True G1565122
TU1790882 other upstream 2441775 56728352 ~ 56737347 (-) True LOC110496560
TU1792637 other upstream 3740934 58027511 ~ 58027790 (-) True G1566899

Expression Profile