RNA id: XM_036953278.1


Basic Information

Item Value
RNA id XM_036953278.1
length 6012
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110496546
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54322817 ~ 54409921 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTCAACATTTTACCGGAGAAAAGGAGTGGGTCTGGGTGCATAGTCAGAATAGCAACGTACTACGTCTGGGAATATTCGCGCACGGTAGAGAACGCGCCTCAGAGCTCCTCAGTTTTGAATACAATTTGTTTTGAGGGTTTACCAAGACGTATTCATTTTATGTAAATTATTTTAATAAATGCGGGGTTTTCTGAGGTGGTGGAGCCGCACTGCACATATCCAACGAGTTTCAATTCAACAGTAGCCTAACGACCGACTGCTATTCATGGATGGTCTTCTAAGGGCCACACTTCAAGGCTTTGTTTACTGTGGTCATAACTCCACCCAAGGCTCCTGTGTGCCTTGTCATCTGTACAGCCTATTACTGTGACACGAGCCTGGCCCGCCAGACTGATAGcaagaggcaAGGACGAGCTCGTGAATAACCACAGCCTGTGTAACCAAGGTGTCAAGGTCCCCTCCCAGAGTGTGATGCATCATGGCTCCGGTGCTCAGTGCCTTGTTAGGGCCGGGGGTCGTGGGGTCAGGGGTCTCCATGGCGACATCGTTAGGCAGCGAGCCGCTGGTCCTTGTGGTCACCCTGATGGCCATCTCTGCCATCGTGCTTCTCTCACTGCTACTGCAGCTGTGTGCCAGCTGCCAGGGGCAAAATAAATCCAATGGCCGCCCAGGAGACCATGAGAACCTCATGAATGGAGTATCTGAGAGAGAGACGTTTACCGGAAGTCAATCTGTGGACAGCCCAGGGACTGACCTAGTGGTGAGCAGTTCACACAACGGCCCACTAACCAGTGGTACAGTGTTGACAGACACCCAGGACAGCAGTCCCCAGCCCTCTGAGGAGATGCTGTCCAGCCAGTCAGAGCTGCGGAGCTCCAAGTGTCCCCAGGACCGTGAGCTTCCCAGCATCCCACCCAACAGCGCCCTGGAGGGGATGGGATCCTCCAGCGAACCCCCTCTACCCGTCTCTGGAGACGGCACCTACGAGgtggtgaaggagagaggcGGCATCTTAACGGCGTCCCGTGACGTGAGCGTTGAAGACTCCCTCTACGAGACGGTCAAAGAGCTGAAGGACCATCCAGGGAGCCTGGCTGTAGGTATACCCAACGGACACGGTACTACGTCCCCCTTCAGCCCCGATGACGACCCTCACCCTCACCACCTCCACAACCCCCTACCCCCTTCCCACCACCGTCCAGCCCTCCACAATGGCCACCTCAGCCCCTGCAGCACTCCGGAGCGGGGGCCCCTGTGCGCGGGAGTGGAGTACGCCTCGGTGGATCTGAACAAGAAGAGCCGTTACAGTGCAGACCTGGAGGCCAGGCGCTCAGCCACCATCACTGCTGCTGTAAGCCCCACAGAGGAGCCCGAGGAGGAGGACAGACCCCCGCCTGTACCTGACAAGGTGCTGGATGAGAACGACAACCAGCCTACCATGATGGACGCAGGAGGGGTGGTGGTAATGGGGGCAGCACTTCACAacggagagTTACTCTCTCCCTCACCGGGGCTTCACAACCATGTGCTGTTGGAGAACGAGctGTCAGACATGTACTCCACAGTGAGGAAGACACACCTAGacgtggaggagaaggagagtgactACAGCAGCATCGCTGAGATCAAAGGTCTGGTCCCTGAGTCGTCCTCCAGTGATCTCTACGCTACTGTCAGGGACATCTACCCCCAGCTCGGAGAGGGGGAGTCAGACCCACAGGGACCCTCTGGGGACCTCCAGGAGTCCCCTGCAGATAGCATCGACCCGGGCTACGAGAACATCTGCCTCACTAAGACTGGTAATGGAGAGGACTTGGGGCTGAGGAACCAGGTTCAGGAGCCAGACTATGAGAGTGTAGGTGAGCTGGGCCTGGGGTTGAACAGGGAGAGTTCCCGTCTCTAACTGGGTAGTAAAGCTACAGTGCGGGGCCTAAACCTGAGCCTCTGGGGCCTCACCCTCAACCCCAGCAGTTAGCCTAACTCCTAGCCTCACCCTCAACCCCAGCAGTTAGCCTAACTAATAGGCTCACCCTCAACCCCAGCAGTTAGCCTAACTTAATAGTCTCACCCTCAACCCCAGCAGTTAGCCTAACTCCTAGCTTCACTCTCAACCCCAGCCATTAGCCTAACTCCTAGCCTCACCCTCAACCCCAGCAGTTAGCCTAACTAATAGTCTCACCCTCAACCCCAGCAGTTAGCCTAACTAATAGTCTCACCCTCAACCCCAGCAGTTAGCCTAACTAATAGTCTCACCCTCAACCCCAACCATTAGCCTCACCCTCAACCTCAGCAGTTAGCCTAACTAATAGTCTCACTCTCAACCCCAGCAGTTAGCCTAACTAATAGTCTCACCCTCAACCCCAGCAGTTAGCCTAACTAATAGTCTCACCCTCAACCCCAGCCATTAGCCTAACTCCTAGCCTCACCCTCAACCCCAGCAGTTAGCTTAACTAATAGTCTCACCCTCAACCCCAGCAGTTAGCCTAACTAATAGTCTCACCCTCAACCCCAGCAGTTAGCCTAACTAATAGTCTCACCCTCAACCCCAGCCATTAGCCTAACTAATAGTCTCACCCTCAACCCCAGCAGTTAGCCTAACTAATAGTATCACCCTCAACCCCAGCCATTAGCCTAACTAATAGTCTCACCCTCAACCCCAGCCATTAGCCTAACTCCTAGCCTCACCCTCAACCCCAGCCATTAGCCTAACTCCTAGCCTCACCCTCAACCCCAGCCATTAGCCTAACTCCTAGCCTCACCCTCAACCCCAGCCATTAGCCTAACTCCTAGCCTCACCCTCAACCCCAGCCATTAGCCTAACTCCTAGCCTCACCCTCAACCCCAGCCATTAGCCTAACTCCTAGCCTCAGACTCAACCCCAGCCATTAGCCTAACTCCTAGCCTCACCCTCAACCCCAGCCATTAGCCTAACTAATAGTCTCACCCTCAATTAGCCTAACTCCTAGCCTCAGACTCAACCCCAGCCATTAGCCTAACTCCTAGCCTCAGACTCAACCCCAGCCATTAGCCTAACTCCTGACCTCACACTCAATGCTAACCATTAGCCTAACTCCTAGCTTCACCCTCAACCCCCGCCATTAGCCTCACTACTAGCCTCAACTTTACCCAGCAGCCCTGATGACAGGAACACCACCTCAGGGCTCTGAACTTCAACCTTCAACCCTACTGCCCATCATCACCAATTCAGTGTTTCTGCCCACTACCCCCTCAGTGCAGTTTGGGTGTGCCCACAGCCCAGCGATATTTGACTGAATTAGCTATAATCTTAACTCTCCATCAATTCATGGGGCCCTTAAATTACAATGTACGCACTCTGGGTGCTATCAAATCAGTATCTGAACTATGAAATCACCGTCCGTTTTCAAGTTATTGGCGTCCGTCCACTTTGTGATGTCGCTTCTCACTCTGTATCATGGTGCACATCACATCACTGAAGATTGAAGGTTAGCTACATTATCAACGACTGCTATCAATGTGGGAAGGAAGGCCAATATTTCTACATTATCCATCACCATCATAATTATTTCCTCAGACTATAAAATAGTACATTTCTAAACATTTCTAACCAGTCATTACGAATTCAGTTCATTTTACAAGGCTGGTGACAAGCTGACTGGCCAGTGACACTTTGTCAGTGCCTTGTGATTGAAAACCAATGAGTTTTTGTGCCATAATGTCGTTCTATAAGGCACTTATAAAGGTATGAGTAGAATGTTTCCCCACAATGTAATGTCACTGTTTATATAATCTGTTCTCCCTTCCTAGTGCAACATTTCATTCAGAACATCATGATAAATCAGAGATATGATAGATATGTGTACTTACATACTATTGTGAAATAAGTAGCCTCAAGTCAGGCAGTTTAGACGGCTGAACTCTAAATGGGACGGCTTGTTTTAGTTTCAAAaacatttttgatttgatttacatgtcaacttttttttattttttaaatcaaattccTATTTATTTGAAGATGGTGGATCATTGTGTGATTAAGGGATATCAGGAAGTGTGTTTGTTCATGAGGGAAACTTGAAAAGGTTTTGTTCTGTACATAGGATAAACACATGAATACGTGGGTTACCATGGTAATAAAGTAGTAAAGGTACTCATGAATAATCCAGACTTTTTAAAAAGGACTTATTCATTCAAACAAAAGACGAACAATGGTGAGACCATATCTATCAATGTTGTTGTGATTTCTTGTGTGAATTGTTCAACTCAGTTGTTGTTTTCTCTATATTTCTTCCCAtgattcaaaatgtatttaaaagaCTTATATTCGCTCAATGTGACAATATGCAACAGCAAAACGGTGTGttaatgcagctgtattgatcAAGGTGTATAATATGTTTGTATGGCGTGTTTATGCTTACCCTGTAGGTACGCAAACTATTGATACGGTGGAAAAGGATTTGAAAGCACAAAGTGTGAAAAAACATTATGCTACTGCTTCTGTACAGAGCttatagcaacaacaacaacatcatacaTACATATAACCCATCATGTGCACAATTATAATATCAATCAATATCAATAACTTAACTATTTGAACAAGCACTATTAAGGTAGCATGTGCTGATGACATGCTAACCGAGGGTTGTATAAAGTTAGAGTACCATTTCATGAAGTCGGTTCATGTATGAATTTGCAAATGGTAAAGTATATTTTGTAGTATGTATGCATGTGATTTGGACTGCTTAATAGTGGCTATAAAAGCACATAGAGTACAGTAAAACCATGATGTCATTTTAAGGGAATACATTTAGGCTAGCTGTAAGTATGCCCTTACTCAGAGAGTGACCTAACTATTGTTGAAAATATAGTGATTGATTGAATGGTGGCGTATGACTGTTTGGGAGTTCTGTATTCTGTTTTAATAGGTCACCATCTCATTGGTTATTTTGTTCTGTTGTTTTATTCAAGTATGGTACATTGTGTTGGTACAGGTGTTTTAAAAACGGAAAAGTCAAAGTtggtactttttatttttttaaagaaaagtgAATGAATATTGTTGTTTGGTGTTTATTTTCAAACTAACTGAGTAAGTTGTGACTAAATAACTAGCTATTGCAATGATGATATCTGCATTTGACAGTTAAACAATAATACTATCTTAGTTTTCCTCCCATTTCTCTGTTATCTCAATATTGCACATTATTGGTGTatgcagagtgagtgagtggatttCATTACACATGCATGAGCTTGAATGAGCTTCTTGATGACAAACCAAGCGCCCAGGTTGACTGATATTATATTCACAAATTAAACCCAGTAAGGAGAGAAAGGACAGTTCCCACTAAATTAGCAACAATTGATAGACACATTAAAGATGCTATACATTTCAGATGTCCTTTAAAGCAAGGGCCCTGCATATGAGGTTTTACACACATTTTATAGAGTGTAATTGTCATTTCATTAATGTTAAATCGCAAAAACATGACCTTTTAATGACCATTGTTCTCCCCAACAGATTCCAGATGAGTTCATGTAGCAGGAAATGCTTTCATTTAAACCTAATGGTGTCTATGGAAATGCCATAAAAGGCTTTTAACAAACGATCTGTCAAATAGGAACATTAGTGCCAAATCTCACAACCAAAGGTACCACACACAGACGAGCGTACGTCTGGCATGGAGAGGAAGCCCATCATAGCACCCTCTCATGCAGCCCACTCTCTAATAATGAAACAATACATTCTCAACAAGCAGCAGAGAATTCCTTACTATTGTCTTTCATCATGGaccctgtgtcccaaatggcaccctattgtctCCATAGGTCACTACTTTTGAAcagtcaaaagtattgcactaatAAATACTATAggtatagggaaaagggtgccatttgggatgcatacagaGCCATGCTTTCTTTGACAGTTATGTGCACATCTGTCATAAGATTCTATCTGGTTTCCTGTGTATGCATGAAAATATTTTAtgaccataatttgaaaatattaAAAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1787233 lncRNA upstream 7477 54314229 ~ 54315340 (+) True G1562121
TU1787191 lncRNA upstream 61720 54260873 ~ 54261097 (+) True G1562086
TU1787171 lncRNA upstream 98937 54222678 ~ 54223880 (+) True G1562066
TU1787144 lncRNA upstream 135960 54185916 ~ 54186857 (+) True G1562039
TU1787092 lncRNA upstream 157530 54122351 ~ 54165287 (+) True G1561990
TU1787321 lncRNA downstream 116123 54526044 ~ 54528153 (+) False G1562195
TU1787322 lncRNA downstream 116123 54526044 ~ 54528153 (+) True G1562195
TU1787324 lncRNA downstream 119707 54529628 ~ 54552380 (+) True G1562197
TU1787368 lncRNA downstream 123473 54533394 ~ 54534406 (+) False G1562239
TU1787369 lncRNA downstream 123473 54533394 ~ 54534406 (+) True G1562239
XM_036951072.1 mRNA upstream 64434 54254893 ~ 54258383 (+) True LOC118940998
XM_036953270.1 mRNA upstream 286103 54022282 ~ 54036714 (+) False gmpr
XM_036953271.1 mRNA upstream 286103 54022599 ~ 54036714 (+) True gmpr
XM_036953266.1 mRNA upstream 314779 53983637 ~ 54008038 (+) True LOC110496857
XM_021572497.2 mRNA upstream 394636 53916292 ~ 53928181 (+) False dync1li1
XM_036953282.1 mRNA downstream 2849 54412770 ~ 54510923 (+) False LOC110496545
XM_036953293.1 mRNA downstream 144457 54554378 ~ 54576444 (+) True LOC110496548
XM_021572515.2 mRNA downstream 221464 54631385 ~ 54635257 (+) True LOC110496549
XM_021572516.2 mRNA downstream 247485 54657406 ~ 54687881 (+) True LOC110496550
XM_036953294.1 mRNA downstream 328332 54738253 ~ 54817359 (+) False LOC110496551
TU1786926 other upstream 445887 53872173 ~ 53876930 (+) True G1561856
TU1786912 other upstream 481946 53817164 ~ 53840871 (+) False G1561845
TU1786915 other upstream 496568 53817164 ~ 53826249 (+) True G1561845
TU1786914 other upstream 499954 53817164 ~ 53822863 (+) False G1561845
TU1786837 other upstream 598153 53720318 ~ 53724664 (+) False LOC110514975
TU1787303 other downstream 99837 54509758 ~ 54510746 (+) True LOC110496545
TU1788910 other downstream 728727 55138648 ~ 55139231 (+) True G1563547
TU1789919 other downstream 1498329 55908250 ~ 55908934 (+) False G1564470
TU1790095 other downstream 1619017 56028938 ~ 56169203 (+) False LOC110496862
TU1790119 other downstream 1640667 56050588 ~ 56051793 (+) True G1564638

Expression Profile