RNA id: XM_036953286.1


Basic Information

Item Value
RNA id XM_036953286.1
length 3580
RNA type mRNA
GC content 0.46
exon number 6
gene id tpd52
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54525693 ~ 54552317 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACAGGCTAGGAGGCTAGCCCGGCTGGAGCTGTGTGTGTCCGACCGCAACACAGTgtcacatactgacacacacacgcactgtcaTATACACGACACACTTTCACGTAATGCACTGTCATATACACGACACACTTTCACGTAATACActgtcacatacacacacgacACAGGAGTACCGTGCGTCTACCAGACCAGGAGAGGACAATCGGAGCACTGACTGAACTGTGCCCCAGCTGCATGTGTCCGAGCACATGCAGGCAATATCAGCTGCTGCAGTGACCTGAGTCATTGTGGTTGGACCCAGCCACCTAACCCAGCCTGGAGCCACCTAACCCAGCCTGGAGCCACCTAACCCAGCCTGGAGCCACCTAACCCAGCCTGGAGCCACCTAACCCTGCCTGGAGCCACCTAACCCTGCCTGGAGCCACCTAACCCTGCCTGGAGCCACCTAACCCTGCCTGGAGCCACCTAACCCTGCCTGGAGCCACCTAACCCTGCCTGGAGCCACCTAACCCTGCCTGGAGCCACCTAACCCAGCCAGGCAACAGCCATGGACGCTCTGGAGCAGGAATACAAGTCGCCGTTTAACTTTGAGCAGGGGGTGAATAGCAGCTACCTCTATCTGTCCCCCAGCGTCATTGTAACACCACCAGGCTCACCGCACGTGACTGTCACAGCCAGAGGTGCTGTGAGACCAGACTCTATCACAGAGGTAGGGGAGGATGCAGTGATGTCGGTGGCTGTGTCCCCTTCCATCCCCACCCTGacagaggaggaacaggaggagctgCGAGATGAACTGCTCAGGGTGGAGGATGAGGTCGTGACTCTGTCTCAGGTGCTGGCAGCTAAGGAGAAGCAGGTGGCAGACATCAAGAGGAAGCTGGGCATCACTCCTCTCAACGAGCTCAAACAGAACATCAGCAAGAGCTGGCAGGAGGTCACCACCTCTACTGCcTACAAGAAGACGTCAGAGGGCCTGTCCGTAGCTGGTCAGAAGGCCACGGCAGCCTTCACCAGCATGGGCTCGGCCATCAGCAGGAAGTTTGAGGACGTCAGGAACACACCCACCTTTAAGTCGTTTGAGGACAAAGTCGAGACTTTAAAGGTCAAGATGAGCCCGACGGCATCTCAGGGTGACTTTGGCGATGTGTTGACCTCTACAGCGACCTCTGACCCTTCTGTTCCCGTAGAGAAACGGCCAGAGGCCACACCCATCGCCACCCAGGAAGAACAGCCTCACTGAGACCTGCCTGACCTTTCACCCCTGACCCCTAGCTAGGCTGACATTCACTAGAACCATACCCTCTTTCCCCTTCTGTCTCCCCTCTTTCTGttgtctcacctcctcccttcttcagcTCCCTCTTTACAATCCTATAGCACAAAACAACAGAACCAACAACCATTCACTAGAACCATACCCTCTTTACAACCCTATAGCACAAAACAACAGAACCAACAACCAAAAAAGAAAAATAAGTTTCCCCAGGAactttaaaattaaaaaaaaatgtaattatgaAAATATTGTTGTGACACCGTAGGTTTGTAGgactgtatgtttctattttaatGTCCATGTTTGAGGAACCTGCACAAGTAGAAGAATATACATTACACTTAATGAGAAACTGTATGTCACAGCAAGTGAAGTTGTGATGGCAAAACGAATTGGTTCACACAGGCCCATATATTTCCAGAACTTTGAGTACTAACAGGCATTtgctttttcttttcttttgatGTACTCCAACCACTGTAATCACTAGGATGTCATTTCTATTCCAACACTGCAGAGGCTTTCTCTGTCatttactactactatcaccaatAGCACCAGTAATGTGGTGTAGAGCACAGCTGAGTAGAGTTAATACCAAATCTGTGTAGCTCACACACTCCTCTCACAGCTTAACCATATGGGGGTGGTCTAAATCTGACCTCTGAGCAGTTCATAGTGCTTAACTCTGATATCAGAGAAGGTGGGCCAAAGCATCCAGATCAGTGTGTAATGATAGTCGCAGATGCATGATTGGTTATAATGGTGTCAGCTGGCCTTGACCCTCAGGTCAGTGCAATTTACATCACTCAAAGCCTCACAGCATGGTGGGCCAAAGTCCGTATTAGGGCACTTGTCTTACTGGCTTCTCTCTGCTTGGTATGCTGAAACACAGCAGGATAGTCACTGGATGCTGTGTACTTCTCTCTGCTTGGTATGCTGAAACACAGCAGGATAGTCACAGGATGCTGTGTACTTCTCTCTGCTTGGTATGCTGAAACACAGCAGGATAGTCACAGGATGCTGTGTACTTCTCTACTGTTGAATGATATATGAATGGTAGTTGTTTTTGTTTCAAAGTGATTTTCATTGTTTACCTTTTCATAAAGATGTGCAATTTTCCTTAAATTGGAAATATACTGTTCTCGACCTAGACTAATAACTAGATTTCCTCCCGTGTCGGTATTTTAATTTCTCTACAGTGTATGTGGTATGGTAATCCATTTTTACAGTTGACTGTCTGAGGGAATGTTTTTCTCTTCTGAACATCTTGAGGTATAAAAGAGTGCGATGCAGGATCCTGTTAAATGTTTACTCTTGACCACACTAGGATGATACATACAGTGCCTATAGAACGTCTACACATCCTtgaatgtttttcaacagaagtCTTTCTAAGAGTTTaagtgttcctgagtggtctagtCTGTCCAGAATTAAATCTGCTTCAACAAAACAGAGGCAAGGTTTAAATATCGCTGTCCACCAGTGATCcccaaccaaatttactgagcCTGGGCAATGTTGACAAAAACGATGGATaaatgttgccctaagagttgtgccAACTTGGTAGAACTTTAATGGAAATGAGTCACAGATGTAATTGCTGCCATAGATGCATCCGCCAAGTATTAACTCAGGATAGAGACTTATCCAATTATGATATCTGTTACTTGGTCAAATAACTTTCTTTCACGTTGAAAATGTGGAGTGGGTTGTGTAGATCTGTAGGAAAAACATTTCAGGGGGAGTGTAGACCTTCTATGGGCACTGTATTTTAGGACACTAGTGAATATTTGGTTTAAATGCCTAATGCAAGTCCTCCCCTACTGGAAGACGACTGGCCATATCATGGCATGGATTCATTGTGGAAATAAAGTTCTGGAAGAAAAGTCCTGGTTCCACCATTAAGAAGACATTATGGCTAATAAAATGTATTCCAGAGAGAAGTTACTGTAGACCCGTTGCCCCCATTTAGCCCGACTGCTAAAGCAGTAGGCTGTTGACTTTTCTGTTTAGTCAGGACCTATTTCACAGAAAGAGGGTCTCCCGCCTCTTCATTGTGGGCAGAAATAGTTTGTCAGGAACTCTGTGATCAAAAGTCTTCTGGTAAACTGCCAGAGAGTAGGCCTTCAACAGCCACACTGGTCTGGTTTGTAGTTGGAATGCTGACGTATCTCTAAAAAAAACAGTCAAACTGGGTTATTTAACAAGAATGCACTTGAACAGTGTCTTGTCTCCTTTAGCATTCCTCACAACCtttcaaataaatgtatttttatgttgTTTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1788411 lncRNA downstream 154388 54369121 ~ 54371307 (-) True G1563100
TU1788371 lncRNA downstream 208225 54316125 ~ 54317470 (-) True LOC118941189
TU1788307 lncRNA downstream 290253 54235048 ~ 54235442 (-) True G1563002
TU1788324 lncRNA downstream 309933 54215427 ~ 54215762 (-) True G1563015
TU1788280 lncRNA downstream 401913 54123462 ~ 54123782 (-) True G1562978
TU1788546 lncRNA upstream 23281 54557544 ~ 54567610 (-) True G1563217
TU1788572 lncRNA upstream 72492 54606755 ~ 54609700 (-) True G1563234
TU1788596 lncRNA upstream 131466 54665729 ~ 54666665 (-) True G1563255
TU1788608 lncRNA upstream 149750 54684013 ~ 54687483 (-) False G1563266
TU1788609 lncRNA upstream 149750 54684013 ~ 54687483 (-) True G1563266
XM_036953272.1 mRNA downstream 208071 54316124 ~ 54317624 (-) False LOC118941189
XM_036953273.1 mRNA downstream 208071 54316124 ~ 54317624 (-) False LOC118941189
XM_021572500.2 mRNA downstream 210050 54314224 ~ 54315645 (-) True LOC110496544
XM_021572499.2 mRNA downstream 239118 54280544 ~ 54286577 (-) True LOC110496543
XR_005037514.1 mRNA downstream 281560 54105015 ~ 54244135 (-) False atxn1a
XM_021572874.2 mRNA upstream 102586 54636849 ~ 54652932 (-) False LOC110496860
XM_021572521.2 mRNA upstream 293454 54827717 ~ 54839922 (-) True LOC110496552
XM_036953300.1 mRNA upstream 308171 54842434 ~ 54853844 (-) True LOC118941190
XM_036953314.1 mRNA upstream 2170589 56704852 ~ 56726308 (-) True LOC110496559
XM_021572529.2 mRNA upstream 2194078 56728341 ~ 56737379 (-) False LOC110496560
TU1788095 other downstream 630746 53889709 ~ 53894949 (-) True mrpl3
TU1788103 other downstream 650103 53874410 ~ 53875592 (-) True G1562828
TU1788090 other downstream 773012 53752406 ~ 53752683 (-) True G1562816
TU1787983 other downstream 897273 53621900 ~ 53628422 (-) False tomm7
TU1788031 other downstream 923001 53598650 ~ 53602694 (-) True G1562762
TU1788544 other upstream 104604 54638867 ~ 54652850 (-) True LOC110496860
TU1788592 other upstream 126363 54660626 ~ 54665643 (-) True G1563253
TU1790620 other upstream 1947205 56481468 ~ 56488289 (-) True G1565122
TU1790882 other upstream 2194089 56728352 ~ 56737347 (-) True LOC110496560
TU1792637 other upstream 3493248 58027511 ~ 58027790 (-) True G1566899

Expression Profile