RNA id: XM_021572874.2


Basic Information

Item Value
RNA id XM_021572874.2
length 2445
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC110496860
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54636849 ~ 54652932 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCCAATCTGCTTGAGCACGTATAGACGCTTGTAATTCACCAGCCCCCTTGCTGTCTCGCGCAGTGCTCTCTTTCCCCACACAGCAGTGTTCTTGCTGACTCAGTGCCTTGCTCGCTTTTTTCGCCAAGCACCGATCAGTAACTGCGACGCACGCTCCCTCCAGTAGCCTATAGCCCACTTCAGCAGCACCAACGCCGCACAAACCGACAGACATGGCTAAAACAGCAATTGCATACAAAGAGAAGATGAAGGAGATTTCTGTCctatctctcctctgctcctgccTGTACCCTGAGGCACGCAAGAACCTGATGGGAGAGTTCCAAGTAGCAGGCATGGAGGTGAAGCCCATCAACAAGCGTGCCTCTGGCCAGGCCTTCGAGGTGATCCTGAAGCCCCCCTCCCCGATGTCGGACGCAGCCCACTGTGTCACCTCGCCCCCTAAGAGGGAGGTCTCTCTGGAGGACATCCAGAAGAAGCTGGAGGCCGCTGAGGACCGGAGGAGATCCCAGGAGGCCCAGGTTCTCAGGGCCCTTTCAGAGAAGCGGGAGCACGAAAGGGACGTGCTGCTCAAGGCCATGGAGGAGAACAGCAACTTCAGCAAGATGGCAGAGGAGAAGCTTACCATGAAGATGGAGCAGATCAAGGAGAACCGCCAGGCCTACCTAGCCTCCATCATGGAGCGCCTGCAGGAGAAGGAGAGGCATGCCCAGGTGGTGCGCAGGAACAAAGAGCTGAGGGAAGAGCTGACAGCGTGAGCAGATGAGGGGCGCCACCGACCATCATACCCCCCTACAGCCACCCTTCCCCccgacagccccccccccccccccccccccagatcccCCTACTACTACAGCCCCCACAGCATCAGacaaccccccccctcccttgagGGAGGAGGATGACCAACCCACCCACCGCCAGCCCACACCAACAGCGTTAGCAAATGGGGGGATCACAAACAAATATGAAAATGTCTCCCACTCCTCCCTATAAAAGAATGTGTTTGCTCAATTTCAAATgatgaaaaagaaagaaaagagaagcCAACCAAGTGAAAGTGGGTATTGTTTTTTGTAAATACTTCCTTTtttgttatatacagtatgataaTACAGCTAAAGTATTGCAGTTTGCGATTGGATCATTTTCTCTATCTATGGATGTACTTTGTTGTGTAGTTTTTCTCAGAACAAAAAACGTTTGCAGTTTCTCTTGTACTATCAGGCTTCTGTGATGTTGTGAGTTTGCCAGCTAGCTGACGTGTGTTTGCGGTGGTTATTttctgaccatgtctgtgtctgtgtctgtgtctgtgtcggtcagtcagtcagtatgggGATGATTAGAATGCAAGCTGCACATTGACTCCTGGAAGAGAGACTAGCTAGACTTCAGGAGACTTATTATAGCATTTATGAGCCGattttctcctgtctgtctgtctgatcccCCACTCTCTTACATACAGttgtacattcacacacacacatgcacgctcacacacacacatactctcaaacacacttacacacacacacacacattttgagaAATTTGGCAAACATGACACGTCGCTCAAGAGGAGCTTGCTAAATTCTGTCAGTTGGGCATTGCAGAGGTCACATGACATCCCTGGCTCATACCATGATGTCACAGAGGGGTGTTATGATCCTTCCTGGTTCCCAAGACCCCCTGCGTCCCCTGTCAATCACTCTCTCAGCATGTATGTACCATCTTAGACATGTAGATAATGTAATCGTGCCTAGAATGCTACAAACTCATATAGCGGCTAACATAGAGGCAATGGTAGATCCATAAGTTACATCCATGTCCTGCAAGCTTATGTGCCCTCTCATTTCTTTCACGTCGTACCAGAGAGGAACCAATGCCAAATGCTACTAGGAAGGTTTCACACTATATATGGAGAATCGTAGAATAACTCTCGCACTATGGAGAATGAATCATTGTACCTTCTTCTTAGTATTTAAACAGCTTTTAACTGGGTACAGCAGACAATGGCATACGAAGGGCATAAACAGCTAAAGTGGGCAACATGTAAGCCAATCAACACATAGACTTCAAATAACAGTTAGATGATGTTAGATGTGTTAACATGACAAAGGAAGACAGTGGCCATCTGCAAAGGGTGCATGCAAGTGTATacaggtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcaggagggGTGGGtggattgtgtgtgcgtgtgtgatgggGAGCACAGGGAGCACAGCCAGGAGGTTGGAGCTGTATATCTGACCATCGGTCACATACTGATGACATCACAGCGTCCTGTCCATGGTGATGaatctgcctgcctctctctcttcctgtttgtgTTTCCCCCCTCCGCATATATCTTTGTGAGCAACCTGTGGTTAATAAAGGTTTGGGGTTCTGTGAATGa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1788572 lncRNA downstream 27149 54606755 ~ 54609700 (-) True G1563234
TU1788546 lncRNA downstream 69239 54557544 ~ 54567610 (-) True G1563217
TU1788411 lncRNA downstream 265542 54369121 ~ 54371307 (-) True G1563100
TU1788371 lncRNA downstream 319379 54316125 ~ 54317470 (-) True LOC118941189
TU1788307 lncRNA downstream 401407 54235048 ~ 54235442 (-) True G1563002
TU1788596 lncRNA upstream 12797 54665729 ~ 54666665 (-) True G1563255
TU1788608 lncRNA upstream 31081 54684013 ~ 54687483 (-) False G1563266
TU1788609 lncRNA upstream 31081 54684013 ~ 54687483 (-) True G1563266
TU1788627 lncRNA upstream 67283 54720215 ~ 54720509 (-) True G1563284
TU1788615 lncRNA upstream 161929 54814861 ~ 54817329 (-) True G1563272
XM_021572505.2 mRNA downstream 84532 54525693 ~ 54552317 (-) False tpd52
XM_036953288.1 mRNA downstream 84532 54525693 ~ 54552317 (-) False tpd52
XM_036953291.1 mRNA downstream 84532 54525693 ~ 54552317 (-) False tpd52
XM_021572507.2 mRNA downstream 84532 54525695 ~ 54552317 (-) True tpd52
XM_036953287.1 mRNA downstream 102574 54525693 ~ 54534275 (-) False tpd52
XM_021572521.2 mRNA upstream 174785 54827717 ~ 54839922 (-) True LOC110496552
XM_036953300.1 mRNA upstream 189502 54842434 ~ 54853844 (-) True LOC118941190
XM_036953314.1 mRNA upstream 2051920 56704852 ~ 56726308 (-) True LOC110496559
XM_021572529.2 mRNA upstream 2075409 56728341 ~ 56737379 (-) False LOC110496560
XM_021572528.2 mRNA upstream 2075409 56728341 ~ 56737381 (-) False LOC110496560
TU1788095 other downstream 741900 53889709 ~ 53894949 (-) True mrpl3
TU1788103 other downstream 761257 53874410 ~ 53875592 (-) True G1562828
TU1788090 other downstream 884166 53752406 ~ 53752683 (-) True G1562816
TU1787983 other downstream 1008427 53621900 ~ 53628422 (-) False tomm7
TU1788031 other downstream 1034155 53598650 ~ 53602694 (-) True G1562762
TU1788592 other upstream 7694 54660626 ~ 54665643 (-) True G1563253
TU1790620 other upstream 1828536 56481468 ~ 56488289 (-) True G1565122
TU1790882 other upstream 2075420 56728352 ~ 56737347 (-) True LOC110496560
TU1792637 other upstream 3374579 58027511 ~ 58027790 (-) True G1566899
TU1792666 other upstream 3422691 58075623 ~ 58078146 (-) True G1566923

Expression Profile