RNA id: XM_036953298.1


Basic Information

Item Value
RNA id XM_036953298.1
length 5922
RNA type mRNA
GC content 0.49
exon number 23
gene id LOC110496551
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54738253 ~ 54817359 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacactcccctCCGTCCGTCAGTCTCCACACACACTCCCGTCCAtccatccccacacacacactcgcccTGGTGCAGTGTGTGAGTGATCAGTCAGAAGAAGAGCAGCTCACAGTCAttgtctgcctgcctggcttCTCTGCTCCGGCTGGATCTGATTCCTGACAGGGAGCGGCCAGCCATCGCCTGGAGCAGGAAGAAGAGGCCACACAACGCTGATTCAATTTTACACTGTAGTCACCCAGAAACAAACCAACCGATCCTTAACCACCCAGAGAAGAAAAAATAGAAGGGAAAAAAAAGACGAGGGGAAAAGAAGTGATGGCTTTTGCCGACATTGGAGAGGACCAGGATGACCTAAATGAAGTGATGCGTGAGGAGATGGAGGACGTCTTCATCTATGATGGAGTGTCGTCCCGCGTCCCAGAGATCATGGCGGCTGGAACCCACTCCCCCGGGGGACCCAATGGGATCATCCGGAGCCAGTCCTTCGCCGGCTTCAGCACGCTACAGGAAAGACGCTCGCGgtgtAACTCCTTCATGGGGAACTCTGCGGTGCAGAAGAAGCCCACATCCAAGCCCAAGAAGCCCCACCTGTCAGGGCACAAGGCCAGCAGTGGCTCCAGAGAGCCCCAGCCCAAGAGGGTGGAGGAGGTGTACGGGGCCCTCAAACAAGGCCTGGAtgagtATCTGGAGGTATACCAGACTGAGCTTGATAAACTCACCTCTCTGATGAAGGACATGAAGAGGAACTCCAGACTGGTGAGACAGGATGGAGTTCTGTACGATCTTGACAAGCAAATCAAAACCATCGAGAGGTATATGAGGCGGTTGGAGTTTCATATGAGCAAGGTGGATGAGTTGTATGAGGTGTTCTGTATCCAGAGGATGCTGAGAGAGGGAGCCAGTAAGATGAAGCAGgccttctctgcctctccctccaccaAGGCCACCAGAGAGAGCATATTAGAGGTCAACCGCAGATACAAGGAGTACACAGAGAATATGAGCACGTTTGAGGTGGAGCTGGAGAACTTGTTGGGGGAATTCCATATCAAAATGAAAGgtctTGCTGGCTTTGCTCGTCTGTGTTCAGGAGATCAGTATGAGATCTTCATGCGGTATGGTCGTCAGCGCTGGAAGCTGAAAGGGAAGATAGAGGTGAACTCCAGACAGAGTTGGGACGGAGAAGAGATGGTCTTCACGCCCCTCATCACAGACCTCATCAACATCAAAGTTACCGAGCTGAAGGGTTTAGCCACTCACATCCTAGTGGGCAGTGTGATCTGTGAGACCAAGGACCTGTTCACGGCCATGCCTCAGGTGGTGGCTGTTGATGTCAACGACCTGGGAACAATCAAACTCAATCTGGAGGTCACATGGTTTCCGTTCGATGTGGAGGACCTGACTCTCTCTTCAGGCAACGTGAGCAAGGCCACCGCCCTGCAGAGACGGGTGTCTGTCTACAGCCAGGGCACGCCAGAGACACCCACCTTCCAGGACCAGTCCTTCTTTtccaCCCTCCCTGATGACGTCTTTGAGAATGGTGGGTGTGGCAACTCTGAGTGCAAGcgcctctccttcaccttttCCGATACATCAGTCTCCTCCCTCAGCCCAAGCCTCGCCCCAGGCCAGTCCAACCCCGAAATCACTGTCACGCCGCCTGACACGAACCATTGGCCTCAAATACCCCCCAGGGAAGACAAAGGGGTAGAAGAGATGGTTCGGGTGCATGCAGACGTAGTggaagaggagggtgaggaggaagaggagagtggtGACAGCGGCGGTAGCGTGAGTGTTAGTCTGGTCAGCGAGGAAGTGGAGTCAGAGTGGGAGAGGGCAGAGTTCCAGCTTAATGTaggttcctcctctctctgctctgagaGCCAGTCGTCAGCTGTGGCTCCTGAGGATGTGTTCCTGGACCACGCTGGGTCTGACAGGGATGGAGATGAAGACGACAGCTCAGAGCTGCTGAAGCCCGTGGAACTGGACACTGAAGAACCAGGCAGCTTGACCAGGCAACTGGTGAGGAGGCTGACGTCGTCCGACATTCTGCCCGAGGTGGTGGGTTTGAGCTGGGCCGGGGAGGGAAGCAGGGCCTTCCTGGAGAGCAGCCTGGAAGAGGCCCTGCACAGCCTGCTGCTGAGGCTGGAATCACTGGGACAACGCTGTAGAGAGCTGCAGGACCTGGAACAGGAAGTGATGCGCCTGGAGGACCTGCTCAAGTGTCGTCTCCCGGGCCACAGGAGCAGGTCGTCCAGTCTCAGCCTGACGGTTGAGAGCGCTCTGGAGAGCTTTGACTTCCTCAACACCTCCGACTTCGATGACGATGACACGGGTGATGACCACGCCCTCCACCACTCTGTGTTCTTTGACAtggaggtggagaggattggGCCTGGAGGCCAGCACCCAGAGGCCAGGGGCCACCTGAGTGAAGCCCTGACGGAGGACACCGGGGTGGGCAACAGTGTGGCCGGCAGCCCCCTGCCTCTCACCACTGGCAATGAGAATCTGGACATGGCCATCGTCATTCATCTGCAGTACTGCGATCAACTCATCCAGCTACTGTCCAGTGGAGGGAGCCCTTGGCAGCGTAGAGCCCAGCTCCAGAAGCTCTCAGCTCAGACTCAGCTGCTAGAGGAACTGGGAGAGATCAGCACAGAATGCCTGGGGAGCATCACCTCGGCTGCTGACgtgctCCCAGGGCTGGCAGAGCGGCCAGGGCTGATGGCTCTGTGGTCAGAGTGTAGTGGTTCTGGAGGACAGTTTCACACTACGCTGGACCGGGTGCTTAAACACATGCACCACAGCTACACCAGTCCACTGCAGGAGAGGCACCCACACACCACAGCTGAAACAGTGATCTGGCTGGTGGTGAGTGAGATGGTGGACAGGAGTGAACtggcctcccctcctccctcggCCCTGTCCCAGGACGTCCTCACAGTGTTCCAATTCCACAGCTACGTCTCAGAGCACAGTGTTGGGGACATGAAGGAACACCTACTGCAGGTGGCTAGAGAGGCTGTGTTTGCGGAAGTCCTGAGCGGCGGCGACTCGGAGCGTTGTCTAAAGGAATTAGAAGAGGTGTCACACACCAGCCTGTGTCCCCAGTTGCAGACTCTCAGGGCCCtggcctccctcctctcccacaaAGACCCCCAGCTCAGCAAGGCCGCAACTGCCTACATCACTTCCGCTGCCTCTCACACACCCTTTAGGTCAAAGgcggTGGACTGCTACACACAGTCCTTGTCGGAGGGGGGAGTTCTAACGCAAAGGTCTGCCTGCGCTGCTCTCGGTTGTCTACAGGCGGTAGAGAGTATTCGAGCGGTGGTGTTGCTGTGTGACTCGGCAGACGAGGAGCTTCATCACATTGCCATAGAAACCCTGCTCACCATGGGAGAGGAGGGGCGTCTGGCGTATGAGCAGCTGGACACGGTGCCCAGGGAGCTGGTACAACTGGGGACAAGGCGAGGGACCGCTGTCACCACTGCCTTCTGAAAGCACAGGTCTAATTAACTTAACCTAGGAGCATCATAACCACAGGAGGGGGACAACCCCCTCACCCCCAACAGTCCGGGCCTCCCTCCACCTTGCCTGAACATTTGAATGGACACAGCTAGGGGGAGGGGCCTGATCAAAGCAGAGGAGCCCAACTCATCATCAAAGGGCCACATGTCTCATCCTTCTCAACAGACTGGTCTAAATCCTAGCTGTCCACTGACCACCACTATTAAGCAATCTCTCACTGCACAGACAGAGCCTATTTACTATCATAACTATTATTATGAATCTTATTATCACGGTTGTGTTTGACATTGTTATTATCAGTATCACAGTTATGGTTGCTTTATATAACTGCTAttaattatttgttttagtaAGTGACGTTCACATTAGTCGACGGCTATTTGTACTTTTGAATTGCACTGTGGCAGGCATGTAAATATCATAGCACAGCATTAAACTCTGTGTGATAATGAGTGACGCATCGAAATGGATCGAGTTGGTGTTTTTCTGATATGCATCGTTGAGTTTCAGGGATTTTACAGACCGTTTGAACACTTTCTGTCAGTGTGTCATGGATGAGAAGTCAGAAGACAGATTCAGGTTGCTCAGGAGGAGGTAGTTAAGCAATGTTCGCAATCTCACGTCATCAACATGCAAAAAGAGGAAGACGGTGTCTTACCGGCCAGCAATGTCCTCACTTCATCAACATGCACAACGTGGAGAGAATCATATACTTGGACTGCTTAACAAACTCTTCTACCCACACATGCCTGGGATCTGCATTCAGAGTTTGATTGAATGTCTGCTTGCTGGGAACTGATTTGAGATCAGTTGTTTAAGCCACTGGAGGAGATTGATCAGAATCTATTGTTTTGGAAGCAGGTTGGCCTCCATGCATGTGCCCATTACTACATGTACTGCTCTTTTCATCCTATTGGTACTAATGCAGTCTAGGAGTATGTGTTAGTGAGGTAATGTTAGTGAGAAATGAGAACGTAACTGCTCCATAGCGGTACAGATCAGAACCAAGGGGTTTGTATAAGTTGGGATGTTGCCGAGGCTATAGTACTCCGTATAGCTTCTTATGCCTATTGTAACTATACTACTGAGTCCGTGGCCTCTTTGCCACGACAACAAAACATGTTTGTTTCTCGACCtaatttatttacttatttacaCGTCACATTTTGGATTCTAATATTCTTTCATTTGCATGTACTTTTTTGAGTAAGAGGGCAGAATGCAGATACTAGTAAAATTGTTTCATTTTCTGCTTCTGGTTGACATTTCAAATATTGGCCTCAAATTCATTTTGGGAATGATCTTGCTTACATATAATGTAACTCAAAATGTGGATTTGTTTAGCTCTTTTGGAATTTGTCTATGCGTtttaaaggaaaaatccactcaaaaactatattttgggaCAGTATCAACAGTAGACTAATGAAAAGAAATACCAAAAAGCTGTTTGAGTGGATTCTTCCTGTAAGTAGAATGAATGGCTGGTTATTATCTGGAGAGGATTTGCCAATATCATATAGCTTTGGTCCAAATGGGACCGTAGATATTAGAGAATCTTTCTTTATTACGCAAGTGACTCATAACCAAAGTAAAGCCTGAATCTAAGAGAATCATCTTTTGTAAGAATGAATCATGAACCTATCTGCAACCTGGCCTCTACACCCAGACTCACCTGAAAAGCACAACAATATTAATCAATGTTATCTAAATGATCATCCCAATCCTGCGACATTACATCGGGTTCTAACTAATTGCACACTCTCCAAAAGCCATAGCGATGAAATAGGTGTATTTAAGGCAGTAATATGTGTGataatgttatttttttcttttGTATATTAAAGCTGTAAGTGTGAGTTTTTCAAATTGAAGATGGCTTTTTGTTGTTCTATGTCAAAGTGTGGCCTTGTGTTCGTTGAACATGGTCTATATTTTGAGTAACAATGCCTGTTTCTCCCATGATGTGAATAACATTACAGTATTTTAGTAAGATGATACTAGTTACTTCAAGGACTAACTCTAACAAcatccttgttttttttttctccacgaGGCCTCTGCTTACTTTCTACTAAAAATGACCAGTGTTGTGAATTGACATTTTGCTTCTATTCCAATCCAAGTCATCAGATTAAAGACGTAGGTCAAATAATTCAACGTTGTTTAATATTCATCATATTTTATGTAACCACACATGATTTgcattatatctttacattatgGTAAACCTTGGACTTGAACAGAAAGCACACAGAAAGGTCATGTCACATAGCTTCAGTAGACTGCATTACATTATTTTCTCCTATTGGTTTACAGTATTTCTCCTGCTCAATGAAAGTGGCAATAAAGTTTATTTTTGCATAATTATGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1787469 lncRNA upstream 4432 54733544 ~ 54733822 (+) True G1562315
TU1787395 lncRNA upstream 22136 54597397 ~ 54716118 (+) True G1562259
TU1787400 lncRNA upstream 85144 54639918 ~ 54653110 (+) True G1562262
TU1787394 lncRNA upstream 98476 54597397 ~ 54639778 (+) False G1562259
TU1787369 lncRNA upstream 203848 54533394 ~ 54534406 (+) True G1562239
TU1787547 lncRNA downstream 12992 54830351 ~ 54831448 (+) True G1562377
TU1787568 lncRNA downstream 45438 54862797 ~ 54863017 (+) True G1562398
TU1788726 lncRNA downstream 119465 54936824 ~ 54937486 (+) True G1563371
TU1788835 lncRNA downstream 229046 55046405 ~ 55046605 (+) True G1563478
TU1788975 lncRNA downstream 468585 55285944 ~ 55287562 (+) True G1563607
XM_021572516.2 mRNA upstream 50373 54657406 ~ 54687881 (+) True LOC110496550
XM_021572515.2 mRNA upstream 102997 54631385 ~ 54635257 (+) True LOC110496549
XM_036953293.1 mRNA upstream 161810 54554378 ~ 54576444 (+) True LOC110496548
XM_036953282.1 mRNA upstream 227331 54412770 ~ 54510923 (+) False LOC110496545
XM_036953281.1 mRNA upstream 328333 54322817 ~ 54409921 (+) True LOC110496546
XM_021572875.2 mRNA downstream 6301 54823660 ~ 54827619 (+) True armh2
NM_001165097.2 mRNA downstream 36547 54853906 ~ 54859078 (+) True tppc3
XM_036953301.1 mRNA downstream 234516 55051875 ~ 55171394 (+) False LOC110496553
XM_036953302.1 mRNA downstream 278685 55096044 ~ 55171394 (+) False LOC110496553
XM_036953303.1 mRNA downstream 281788 55099147 ~ 55171394 (+) True LOC110496553
TU1787303 other upstream 227508 54509758 ~ 54510746 (+) True LOC110496545
TU1786926 other upstream 861324 53872173 ~ 53876930 (+) True G1561856
TU1786912 other upstream 897383 53817164 ~ 53840871 (+) False G1561845
TU1788910 other downstream 321289 55138648 ~ 55139231 (+) True G1563547
TU1789919 other downstream 1090891 55908250 ~ 55908934 (+) False G1564470
TU1790095 other downstream 1211579 56028938 ~ 56169203 (+) False LOC110496862
TU1790119 other downstream 1233229 56050588 ~ 56051793 (+) True G1564638
TU1791219 other downstream 2214262 57031621 ~ 57031963 (+) True G1565672

Expression Profile