RNA id: XM_021572875.2



Basic Information


Item Value
RNA id XM_021572875.2
length 663
RNA type mRNA
GC content 0.52
exon number 3
gene id armh2
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54823660 ~ 54827619 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGATTCAGCGAATTGCATTATTTTACAGCAACCATATCAAAAACTACCTGTTTCCCAATGATGAGGGGTCTGATGAAGGCAATAAGAACTTGCACTATAAGAAGATTAGACTAGCAGGCCAGGACATTCAGAACACAGAACTGCCTCTGGAGAAGAGAGTACTGGCAGTCCACAACATTGGCCTACTGGGATACACAGGTGGCTATGCAGCAGCAACCTGTGCTGCAGAGTACATGCCAGCCATGGCAGACTTCCTCAAGCAGCACAGCCTGTCAGATGACCAGAGGATCTCTGTGCTGGAGGGGCTGTCTGGTGTCTGTTATGTCCACTTGACCAACCAGAAGCAGGCCCACTCAATAGGCCTCTACGCCACACTACAGGAGCTGATGGACCCCACCTGCCCACTGTCTCTATCCACCAAGGCTAAAATGTGGAGCTGCTACTTGCTCAACATCCTGTGTTGTAACAACATCCCAGTTATACGCACCTTGGTGGGGTCACAGAGCCTGAGGCTGACCCTAGAGGCTCTGGAGGGACAGGACTGGTACGGCTGGCCGAAGAACTATGCCAGGGAACTGCTCTGCATGCTAGGGTTCTGGGCACCACAGGTTGTTACAGCACTAGGCACCGGACAGGTTGCAGTGCAAAACTATGGCTCTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1787533 lncRNA upstream 16290 54805589 ~ 54807370 (+) True G1562366
TU1787504 lncRNA upstream 59022 54764248 ~ 54764638 (+) True G1562341
TU1787483 lncRNA upstream 77471 54745750 ~ 54746189 (+) True G1562329
TU1787469 lncRNA upstream 89838 54733544 ~ 54733822 (+) True G1562315
TU1787395 lncRNA upstream 107542 54597397 ~ 54716118 (+) True G1562259
TU1787547 lncRNA downstream 2732 54830351 ~ 54831448 (+) True G1562377
TU1787568 lncRNA downstream 35178 54862797 ~ 54863017 (+) True G1562398
TU1788726 lncRNA downstream 109205 54936824 ~ 54937486 (+) True G1563371
TU1788835 lncRNA downstream 218786 55046405 ~ 55046605 (+) True G1563478
TU1788975 lncRNA downstream 458325 55285944 ~ 55287562 (+) True G1563607
XM_036953294.1 mRNA upstream 6301 54738253 ~ 54817359 (+) False LOC110496551
XM_036953295.1 mRNA upstream 6301 54738253 ~ 54817359 (+) False LOC110496551
XM_036953298.1 mRNA upstream 6301 54738254 ~ 54817359 (+) False LOC110496551
XM_036953299.1 mRNA upstream 6301 54738254 ~ 54817359 (+) False LOC110496551
XM_036953296.1 mRNA upstream 6301 54753755 ~ 54817359 (+) False LOC110496551
NM_001165097.2 mRNA downstream 26287 54853906 ~ 54859078 (+) True tppc3
XM_036953301.1 mRNA downstream 224256 55051875 ~ 55171394 (+) False LOC110496553
XM_036953302.1 mRNA downstream 268425 55096044 ~ 55171394 (+) False LOC110496553
XM_036953303.1 mRNA downstream 271528 55099147 ~ 55171394 (+) True LOC110496553
XM_036953304.1 mRNA downstream 346087 55173706 ~ 55213167 (+) False LOC110496554
TU1787303 other upstream 312914 54509758 ~ 54510746 (+) True LOC110496545
TU1786926 other upstream 946730 53872173 ~ 53876930 (+) True G1561856
TU1786912 other upstream 982789 53817164 ~ 53840871 (+) False G1561845
TU1788910 other downstream 311029 55138648 ~ 55139231 (+) True G1563547
TU1789919 other downstream 1080631 55908250 ~ 55908934 (+) False G1564470
TU1790095 other downstream 1201319 56028938 ~ 56169203 (+) False LOC110496862
TU1790119 other downstream 1222969 56050588 ~ 56051793 (+) True G1564638
TU1791219 other downstream 2204002 57031621 ~ 57031963 (+) True G1565672

Expression Profile