RNA id: NM_001165097.2


Basic Information

Item Value
RNA id NM_001165097.2
length 1403
RNA type mRNA
GC content 0.45
exon number 5
gene id tppc3
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54853906 ~ 54859078 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCAGGAAGTTGGGTGTTTGACAGCTGATACAGAAAATAGATCACGGGGACCGCtttcaaataaacaaataaataaaggataaataccCAGTCATCTTTACAAGCCTGTAACCCAATACACTATGTCAAGGCAATCCAACCGAACCACAGACAGCAAAAAGATGAACGCAGAGTTGTTCACACTGACATACGGGGCCCTGGTAACccagctgtgtaaggactatgAGAATGACGAGGAGGTCAACAAACAGCTGGATAAGATGGGATACAATATCGGAGTGCGTCTCATCGAGGACTTCTTGGCACGCTCCAGCGTTGGGAGGTGTCAGGATTTCCGAGAAACAGCCGATGTCATTGCTAAGGTGGCGTTTAAGATGTACCTGGGCATCACCCCCAGTGTGACCAACTGGAGCCCGGCGGGAGACGAGTTCTCCCTCATCCTGGAGAGTAACCCCCTAGTGGACTTTGTAGAGCTGCCTGACAACCACAGCTCCTTGGTCTACTCCAACCTGCTGTGTGGGGTACTCCGAGGAGCTCTGGAGATGGTGCAGATGGCAGTGGATGTGAAGTTTTCTCAGGACACCCTGAGAGGAGACAATGTCACAGAGATCCGCATGAAGTTCATCAAGAGGATGGAAGAGAACCTACCGGCCGGGGATGagtgagagaaacacacagagcgtgagtgagagagagaaacctctacctctcctctcgctctccatccATCCTGAATCTGATGTCACTCAGGGGGGtacggagagagagggcgagaaagagGTATTGGGTAACCCTTCACTGAAAGAATGGAGACAAGGAAATTAAGTCCTTGGGTGTGTCTCAAACGTATTCTatcttcctctccttgtctccttcccttcatctgcaCCGTGTAAAGATAATGGATAGATAGAGGAGGGTTCAACTCAGGGAAGGAGAGGACTTGGCCTTTGAGATGCACCGTTTGGTTTATGGAAGGACTTCTGCTGAACTATGATCCTTGACCTTTACTGTCTGCTCATATGACCCCTGACCTTTCCCCTTTAATCTCTGCTCCTGGGATGAGGAACTCCTTGGCCACTTCATCACATGTTAATTTCTGAGAAAAACGTTGTCCCTTAGATATTGTCTAGGCTTTTTGTCTAGTGAAAGTAGTCAGGAAAAGCTCCTGGCCCATTACAAATGGAAATGTTTTTGATTTTAAATTCTGTTCATTTAATCAATTTAGATCACTGAATGGAATGTGATGGTTTCACTACCAAGTCAATTGTGTTGTACACGGTGGACCAGATTTTGACATGATAAGTTTTGTTTTGAcatttagttttttaaatataaGATCAGAGGTTCTGTTAATGTCTGTGTATAATATGTTTATTTGTTGTCTATGCattaaatacat

Function

GO: NA

KEGG:

id description
K20302 TRAPPC3, BET3; trafficking protein particle complex subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1787547 lncRNA upstream 22458 54830351 ~ 54831448 (+) True G1562377
TU1787533 lncRNA upstream 46536 54805589 ~ 54807370 (+) True G1562366
TU1787504 lncRNA upstream 89268 54764248 ~ 54764638 (+) True G1562341
TU1787483 lncRNA upstream 107717 54745750 ~ 54746189 (+) True G1562329
TU1787469 lncRNA upstream 120084 54733544 ~ 54733822 (+) True G1562315
TU1787568 lncRNA downstream 3719 54862797 ~ 54863017 (+) True G1562398
TU1788726 lncRNA downstream 77746 54936824 ~ 54937486 (+) True G1563371
TU1788835 lncRNA downstream 187327 55046405 ~ 55046605 (+) True G1563478
TU1788975 lncRNA downstream 426866 55285944 ~ 55287562 (+) True G1563607
TU1788990 lncRNA downstream 449347 55308425 ~ 55308791 (+) True G1563621
XM_021572875.2 mRNA upstream 26287 54823660 ~ 54827619 (+) True armh2
XM_036953295.1 mRNA upstream 36547 54738253 ~ 54817359 (+) False LOC110496551
XM_036953301.1 mRNA downstream 192797 55051875 ~ 55171394 (+) False LOC110496553
XM_036953302.1 mRNA downstream 236966 55096044 ~ 55171394 (+) False LOC110496553
XM_036953303.1 mRNA downstream 240069 55099147 ~ 55171394 (+) True LOC110496553
XM_036953304.1 mRNA downstream 314628 55173706 ~ 55213167 (+) False LOC110496554
XM_036953305.1 mRNA downstream 315035 55174113 ~ 55213167 (+) True LOC110496554
TU1787303 other upstream 343160 54509758 ~ 54510746 (+) True LOC110496545
TU1786926 other upstream 976976 53872173 ~ 53876930 (+) True G1561856
TU1786912 other upstream 1013035 53817164 ~ 53840871 (+) False G1561845
TU1788910 other downstream 279570 55138648 ~ 55139231 (+) True G1563547
TU1789919 other downstream 1049172 55908250 ~ 55908934 (+) False G1564470
TU1790095 other downstream 1169860 56028938 ~ 56169203 (+) False LOC110496862
TU1790119 other downstream 1191510 56050588 ~ 56051793 (+) True G1564638
TU1791219 other downstream 2172543 57031621 ~ 57031963 (+) True G1565672

Expression Profile