RNA id: XM_036953306.1


Basic Information

Item Value
RNA id XM_036953306.1
length 6641
RNA type mRNA
GC content 0.52
exon number 34
gene id LOC110496862
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 56028870 ~ 56504444 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccgCGCATCTCCGTTCTCCGCTGCTGAAGCGACTGCGGGGAACCAGATGCCCTACTGTGAGCCGCTGCCTGTGGATATCGCGGATGCCAGAGCAGAATAGACCTAGTCGAGAGACAGACCCATTCACACTCAGCCAAAGCGAATAAAGAAGAGGGGTAGTgggagagataaggagaggtGGTTTTACGCGTTGTCAGTGTGGTTTTCAGCTTCGGAAAAAGAGCTACTGTAAGAAGAGGAGGACTCGCAATATTGGGCACTAGAATAAGAAAAAAAACGCGTTATCCCGTTCTGCTGCTGCTGCGGCTCGTGAGCGCATTCTCTGCTCGGTTTGGAATACAATGTGTCTGCATGAGACCATGGAGATACGGAGTGGATTTATCAAAGAGCACTTCGACAGTTTATGAACAAAACTGGACCTCTCTTTTTCTACGGCATTTTGTCCCCCTTTTTCGTTGGgattgtgttttgtttttgtgtattttttcCGTTTGCATATTTTCGTTTGATTTATGGTGTTTTATGATTTCatgtcatattttttttattttttaactattTCGGTTTTTACTTTTCATCGGTTTTGGAGGAGAGCTGGATTGACTCGTCGTGAAGATTTGTGTAGAGAAGATTCCCCGTCGCTCATGTGAATGATATTCTATCTCCCCAACTGAGACGTGCCATGGATGGAAAACTTAATTTGCATCAACGAAACCGATCGGGAAATATCCGTTACATCGAATAACTACTGCTAACAGCAATCAGGACGAATGACATAGGATGAACACTACTGgcggggtgtgtctgtgtgtgctgtcgTCCCTCCTCGGTGTGGCCTGGGCCGTGGCTGCTCTAGTCCCTCTAGATCTAGCTCCTCTTTCTACCCTGGCCGCTGCCTATGGGGCTGCCAGTGGAGGCTCTCCCAGGGAGGCAGAGGGGGGCAGCCTCCCCTCCCAGTGTTCCAGCCTGGTAGCAGGGGTACTGTATGGATCTTTCTCTCTGAGAGAGCTGTTCCCGTCCCGGGTGCCGGGCTGTTCCTGGTCGTTGGAGAACCCCGATCCCACCAAGTATTCCCTCTATCTCCGATTCACCCGTCACCCCTCCATCTGTCAATCACACTCCCCCATGCTCCTCCCACTCGACCATCATCTAGCCAATCAGAGCTGCCCGCTGGATCTACAGACATCAACTCAGGACGTGATAGACCTTTGCGGCAGCCAATTAGAATCGGAAGGACCATATTCATTTTTACAGTTCGACAAGAACTTTGTTGAGCTATGCCTGTCGAGACTACCGTCACCTGATGAACCGCCGGTAACCAAGGAAACGCTAGAACTCCGGCTAGTCGAGGTTTTGCTAATCAACAATGAGAACTCCAGCCAGTTCACCTGTGGAGTACTCTGCCGATGGTTTGAGGAGTGCCTGCGCAATGGTCGTCATGGAGACGGTGACGCTGCTGACGGTGACGGTTGCAGAGTTACTCAGACGGGGTGTGTGTGTCCTAACAACAATGTGGTCATGGCTCAGCCTGTACCCCTTCTCCCGTCAACGCCCCATAACAACGGATCGCTGTTACCTGACGATTGCTGCGTCACAGAGCTGCACCATAACAATGCCATTGCCATAGCCCCCAGGGACGTCAGACAAGatCCCTACTCAGACTCAGATGATGATGACCTGAAGGTGAAGACGCAGAGACCCAGATCAGCAGACCAGCCAGGTGTGTTTCAGGCACAGACAGgtgaccCTGCGGCGGAGGAGTGGTCTCAATGGAGTGTGTGTTCGTTAACATGTGGTCAGGGTTGGCAGGTGAGGACGCGCTCGTGTGTGTCCTCTCCCTACGGCACCCTGTGTAGTGGCGCCCTGAGAGAGACACGTATGTGTAACAATACCGCCACCTGCCCCGGTGACCCAGCACTGAGCTCAGTCCATGGGCTGTGGGAGGAGTGGTCGTCATGGAGCCTTTGTTCTGTCACGTGTGGGCGGGGCTCCAGGACCCGAACCAGGAACTGTGTGAGCGGAGGAGAGGCCAAGCTCTGTGGAGGGCCTGAGAAACAGACCAAACTCTGCAACATAGCAGTGTGTCCCGtggAGGGCCAGTGGTTGGACTGGGCTCCGTGGTCTAGGTGCAGTGCAACCTGTTCCACAGGGAGCCAGCAGAGACAGAGGAGGTGTAGTGCATCGGTGCACGTCTGGGCAGAGTGTAAGGGACCACACCAGGAGACCAGGGAGTGTACCAACCCATCCTGCGGTGgTGGGGGTAACTGGGGCAGCTGGAACCACTGGAGTCTGTGCAGTAAGACGTGTGACTCAGGGTGGCAGCGTCGCTTCCGGATGTGTGAGGGGACAGGGATACAGGGTTACCCCTGTGACGGCTCCGGAGAGGAGGTCCGTTCCTGCAATGACAAGAAGTGCCccgcaccTCATGAGATCTGTAGAGACGAGTACCTTGTAGCCATGACCTGGAAAAGTGCCTCGGCTGGAGAAACAGTCTACAACAAGTGTCCGACTAACGCCACTGgATCTGCAAGTCGTCGTTGCTTGCTGGATGCTAATGGAGTTGCTTACTGGGGTCCTCCGAGCTTCGCCAGATGCGTCTCGATGGAATTCAGATATTTACATTTATCTTTGCGAGAGCATCTTGCGAAGGGTCAGAGGACCCTGGCTGGAGAGGGCATGTCTCAGGTCGTGAGGAATCTCCTGGAGCTCTTACAGAGGAGGAGCTACTACAGCGGTGACCTCCTGTTCTCCACGGAGATTCTCCGAAATGTGACGGACACCTTCAAGAGAGCAACCTACATCCCAGTACCCGACGACGCTCAGAAATTCTTCCAGGTAGTCAGCTATATGTTGGACATGGAAAATCTAGTGAAATGGGAAGACGCTCACCAGGTTTCTCCTGGTGCGGCCCATCTCATGCGTATATTGGAGGACTTCATCCATCTGATAGGAGATGATCAGAAACCCTTCCAGAGTTTCCTGGTGGTCACCAACAACCTCATGATAACAATACAGCGAGAGCCTGTGACAGCGGTGTCCAGTGACATCAACTTCCCCATGAAGGGTAGGAGGGGCATGAAGGACTGGGCTCGATCTGCTGAAGACAAACTCTACATCCCCAAAGAAGTCTTCACCCTCACCTCCGATGaaacagaaacagagacttCATATTTTGTCATCGGAGCCATTCTGTATCGGACCTTAGGAGTCATCCTACCTGCCCCCAAtgCCCCTGCTGTGATCAACTCGAAGATTCTGACGGTGACGGTCCGACCAGAACCCAAACCCAGTGAACCCATGGTAGTGGTGGAGCTGTCCCCACTGCTCAATGGCACATCAGATCCTCAGTGTGTTGTCTGGGACTATGGGAACCCggAAGCTGGCGCTAAGAACTGGGACACCGAGGGCTGCCAAACACTCACGTCTGCCGCCGTCCACACTAAATGCCTGTGCAGCAGGATCTCAACCTACGCTGTGCTAGCGCAACAAGCTAAAGACCCGgaAATGGGTCCGTCCAGTATGCCCTCTGTACCCCTCATGGTGGGCTGTGGGGTCTCCTGCAGTGCTCTGCTTATCCTGTTGCTCATCTATGCTGCCTTCTGGAGgTATATCCGTTCCGAGAGGTCTATCATCTTGGTCAATTTTTGTCTCTCCATCCTGGCCTCCAACATCTTGATACTGGTTGGACAGTCCCAGACACTCAGCAAGGGCCTGTGTACTGTGACTGCTGCTTTCCTTCATTTCTTCTTCTTGGCATCGTTCTGCTGGGTACTGACAGAGGCGTGGCAGTCTTACCTGGCTGTGATTGGCAAGATGAGGACACGCCTCATACGCAAACGCTTCCTGTGCCTGGGCTggggtCTCCCAGCCCTGGTGGTTGCTGTGTCAGTAGGTTTCACTAGAGCCAGAGGTTACGGTACACCCAGCTATTGTTGGCTGTCCTTGGAAGGCGGGCTTCTCTATGCCTTTGTCGGTCCTGCAGCCGTCATCGTATTGgtGAACATGCTGATTGGCATTGTGGTCTTCAACAAGCTCATGTCTCGAGATGGCATCTCGGACAAGTCTAAAAAGCAAAGAGCTGGggCATCCCTGTGGAGTTCCTGTGTAGTTCTCCCTCTGCTGGCTCTGACTTGGATGTCTGCTGTGTTGGCCATTACCGACCGCCGCTCCACACTGTTCCAGGTGCTGTTTGCTGTCTTTGACTCTGTCCAGGGCTTCGTCATCATTACTGTGCACTGTGTCATGCGCCGcgaggTCCAGGACGCAGTGCGCTGTCGGATGGGGGGATGTAAAGATGACAGTGAGAACTCACCGGACTCATGCAAGAACGGACAGGTGCAGATCATGACGGACTTTGAAAAAGATGTGGACCTGGCGTGTCAAACagAAAGAGGACACCCATTCATCTTCAAGGAGGTGAACACCTGTAACCCGGCAACCATCACCGGAACCCTCTCCCGAATCTCCCTTGATGAAGAGGACGACCCTAAACTGGCGACCCACCAGGAGGGGGGTTTAGGGGTCAACTTCAGCTCCCTCCCTGGAAACATCCCCCCTCCTAACCTACTCGTTCAGGTGCCCCCGCTGGGTGTTCTGAATGAGCTGAGTGACACCCCTGTGAAGAAGGAGGTGAACATGGAGCAGAAGAGGCAGCATGGGAACCCCAGGAACACAGTGCCTGTATACCTCTGCACCGATAGCGGGCTGGGCTGGTCTCGACCGCCTCCCCCTCACAATACCCAGGATGGAACTAgcggggaaggggagggggactATATGGTGTTACCCCGTAGGACGGTCAGTCTAAAACCCCCTCCGCCCccggggctggggctggggggcGAGGACAAGCCCCTGAACATCGCGGTGGACGACCCGCCtttccccccacccccctcgCCCATGACCCTCCACCCGGCGGAGAGCGAGGCCTACCCAGCCGACTTCATCTCACCCGGCGACCACAACATGAATATCGCAATGAACATGAACCGCTCCTACGGGACGCTCAAGCAGCTCCCCATGCACGGGGGTCACGGACCCCAGGGCCACATGCACGTTCCTGGCAGCCACGTGCACGGCCATGGGCAATCACTGCAGCTGAAGCAGGGCCAGAGGCCGTCGGTGAGACAGATACTAACAGGAGGGGGAGGCACCCGGACCCTACCACGCAACCTTGGCAGTACCAACGCTAATGCCAGCCTCTCTGCTGGCTCcctggagaGGAAAAGAGTACGGTACTCTGAGCTGGACTTTGAGAAAGTGATGCACACTCGCAAACGACACTCTGAGCTGTACCATGAGCTCAACCACCCCACCACCAAGTTCCACACCATAGACAGGTATAACAGGGACCCCGCCATGTCCACCTTCAAGAGGGAAAAGCGATGGAGCATTTCGTCTGCCGGAGGTGAAAAGAACTCTTCGAGTGACAAGTCGACTCCGACCCAAGATGACCAGCACTCCTGGGACAGCTTCAAGACCATGACCCCTGAGCTGTCCATTGTGCCGGGGGAGCAGAAGGACAGGATGGAGCTGCACAACAAGACCACCTGGGACTCCTCGTCTGCCAACACACCTGACACGTCCGAGGGGGATTTCCAGACTGAAGTGTGATGaggcagagaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacactctcactcacacacacacacacacacacacacacactcacactcacactcacactcacactcacactcacacacacacacacacacacacacacactcacactcacactcacactcacactcacactcacaaagTTTCAAGCGTAGACTAACAGGTAGCCACATGTAcatacatagacagacacacagcactcCTCCAAACCGCTCTTCACATCCTAAAATCTGCTCTCTAAAGGATGATATCATTTGTTTACTGCTAATGTGGACAAGGACAAAGCAAAGACAACTGTTCTCTTCTATATTTTCAAACAGACTTTAAATGAGAGAACAGGGCTTGAAAGAGACGGACTGAGAAACTGAGAaatttttaaatggacaaaaaaacaaacaaaactttcTGAAAAATGTCTTGGTTTTATTCACTGGAAAAAAGGATTCTCTTTCACCTgtttgatgatttgaaaaaaaaatgaatatttcTGCACCGTTCTGTTCTTTTTATAGAGAAGAAATCTCACTGATGTTTGGCACACTGTTAAACCCCTTAGGCTCCctctcttcatttctctccttctttcccttcTAATGGATGACGCAAGCACTCGttttttcttctgtttttttGGAGGGGTTGGGGAGGGGCAAGTAGGGAGTAAGAACGGATCATTGACATGTGACCTCTGCTTTTGCCAAGTCTCACACTCTTCTCTCGTCATCCTTTTTCAATGTCTTGTTTTTTCCtttttatattgttatgattTTAGTTATGATGTCCCTTCTCTATGGTTCAATTTTTTTTTAGCAACAAAAACAATTTGTGACAAAACAACCTTCAACTGAGTTTGTTGTTGTCTCATTGTCTATCTCTTATATGAAAGTCCTCTTTTATTTTGAGTTTCCGTTCGTGCTTGTGCTGCCTTTTCCATGCTGAATTTTAAAGAGTGATTTATTACCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1789953 lncRNA upstream 77996 55948743 ~ 55950874 (+) True G1564492
TU1789924 lncRNA upstream 118764 55909557 ~ 55910106 (+) True G1564471
TU1789922 lncRNA upstream 120222 55908085 ~ 55908648 (+) False G1564470
TU1789920 lncRNA upstream 120222 55908250 ~ 55908648 (+) False G1564470
TU1789921 lncRNA upstream 120222 55908346 ~ 55908648 (+) True G1564470
TU1790394 lncRNA downstream 3517 56505108 ~ 56505317 (+) True G1564896
TU1790398 lncRNA downstream 6693 56508284 ~ 56508487 (+) True G1564900
TU1790796 lncRNA downstream 195269 56696860 ~ 56697134 (+) True G1565273
TU1790721 lncRNA downstream 224356 56725947 ~ 56765416 (+) True G1565206
TU1790832 lncRNA downstream 246741 56748332 ~ 56749389 (+) True G1565307
XM_036953304.1 mRNA upstream 815703 55173706 ~ 55213167 (+) False LOC110496554
XM_036953305.1 mRNA upstream 815703 55174113 ~ 55213167 (+) True LOC110496554
XM_036953301.1 mRNA upstream 857476 55051875 ~ 55171394 (+) False LOC110496553
XM_036953302.1 mRNA upstream 857476 55096044 ~ 55171394 (+) False LOC110496553
XM_036953303.1 mRNA upstream 857476 55099147 ~ 55171394 (+) True LOC110496553
XM_036953310.1 mRNA downstream 67769 56569360 ~ 56704104 (+) False LOC110496558
XM_036953307.1 mRNA downstream 67796 56569387 ~ 56704104 (+) False LOC110496558
XM_036953309.1 mRNA downstream 67796 56569387 ~ 56704104 (+) False LOC110496558
XM_036953311.1 mRNA downstream 67796 56569387 ~ 56704104 (+) False LOC110496558
XM_036953312.1 mRNA downstream 67796 56569387 ~ 56704104 (+) False LOC110496558
TU1789919 other upstream 119936 55908250 ~ 55908934 (+) False G1564470
TU1788910 other upstream 889639 55138648 ~ 55139231 (+) True G1563547
TU1787303 other upstream 1518124 54509758 ~ 54510746 (+) True LOC110496545
TU1786926 other upstream 2151940 53872173 ~ 53876930 (+) True G1561856
TU1786915 other upstream 2202621 53817164 ~ 53826249 (+) True G1561845
TU1791219 other downstream 530030 57031621 ~ 57031963 (+) True G1565672
TU1791310 other downstream 607537 57109128 ~ 57111840 (+) False LOC110496571
TU1791300 other downstream 607742 57109333 ~ 57111840 (+) False LOC110496571
TU1791304 other downstream 607742 57109333 ~ 57111963 (+) False LOC110496571
TU1791820 other downstream 1349630 57851221 ~ 57863046 (+) True LOC110496591

Expression Profile