RNA id: TU1790101


Basic Information

Item Value
RNA id TU1790101
length 319
lncRNA type sense_over
GC content 0.42
exon number 1
gene id LOC110496862
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 56028870 ~ 56504444 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagacatGTCTACCCTGTGGATGTAAATTAACACCCAGTCACGGTTACCTCCCCACTCCACCCTTGCAGAAAGAGGACACCCATGTAAGTCTGGTACCAGCCTGACCCTAATAAAACGGTCAGTCACTAATGGCCCAACCCTAACTTGAGATCTACATCAAACTCCTAACTCAAACTTTCATGCAAATTTTGTAGAACAAAGTAGAATGGTGATGCAGGGATGCATTATGAGGACTTTGCTATTTGAATATAGGCCTTGTTCTATAGAACAACATCTAGAATAGTATTGTACCTGACAAAGGCTATAACCAAATGCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1790387 lncRNA upstream 730 56471470 ~ 56471691 (+) True G1564889
TU1790386 lncRNA upstream 2567 56469651 ~ 56469854 (+) True G1564888
TU1790378 lncRNA upstream 12496 56454904 ~ 56459925 (+) True G1564880
TU1790363 lncRNA upstream 41629 56430520 ~ 56430792 (+) True G1564870
TU1790322 lncRNA upstream 111210 56360981 ~ 56361211 (+) True G1564832
TU1790390 lncRNA downstream 1127 56473866 ~ 56474135 (+) True G1564892
TU1790093 lncRNA downstream 6627 56479366 ~ 56486454 (+) True G1564616
TU1790089 lncRNA downstream 27981 56500720 ~ 56504444 (+) False LOC110496862
TU1790091 lncRNA downstream 27981 56500720 ~ 56504444 (+) True LOC110496862
TU1790394 lncRNA downstream 32369 56505108 ~ 56505317 (+) True G1564896
XM_036953304.1 mRNA upstream 1259254 55173706 ~ 55213167 (+) False LOC110496554
XM_036953305.1 mRNA upstream 1259254 55174113 ~ 55213167 (+) True LOC110496554
XM_036953301.1 mRNA upstream 1301027 55051875 ~ 55171394 (+) False LOC110496553
XM_036953310.1 mRNA downstream 96621 56569360 ~ 56704104 (+) False LOC110496558
XM_036953307.1 mRNA downstream 96648 56569387 ~ 56704104 (+) False LOC110496558
XM_036953309.1 mRNA downstream 96648 56569387 ~ 56704104 (+) False LOC110496558
XM_036953311.1 mRNA downstream 96648 56569387 ~ 56704104 (+) False LOC110496558
XM_036953312.1 mRNA downstream 96648 56569387 ~ 56704104 (+) False LOC110496558
TU1790095 other upstream 303218 56028938 ~ 56169203 (+) False LOC110496862
TU1790119 other upstream 420628 56050588 ~ 56051793 (+) True G1564638
TU1789919 other upstream 563487 55908250 ~ 55908934 (+) False G1564470
TU1788910 other upstream 1333190 55138648 ~ 55139231 (+) True G1563547
TU1787303 other upstream 1961675 54509758 ~ 54510746 (+) True LOC110496545
TU1791219 other downstream 558882 57031621 ~ 57031963 (+) True G1565672
TU1791310 other downstream 636389 57109128 ~ 57111840 (+) False LOC110496571
TU1791300 other downstream 636594 57109333 ~ 57111840 (+) False LOC110496571
TU1791304 other downstream 636594 57109333 ~ 57111963 (+) False LOC110496571
TU1791820 other downstream 1378482 57851221 ~ 57863046 (+) True LOC110496591

Expression Profile